Lsi05G015720 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G015720
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Nutrient reservoir
Location	chr05 : 23483743 .. 23484273 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTGCCATTTCTCTCAAAATTTTCATCTCTCTCACGGCGGTTCTCCTCATTTTTCCACCCGGATTTTCGTCCCTCACGGTGGCCGACCGTCGGATCTCCGCCGGCGCAAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCCTGCGGCCAGTATCTCTCTCCACCGCCTCCTCCGCCGTCTCCTCCTCCTCCCGTTAACTGCCCGCCGCCGCCTTCTCCCCCCAGCTCCGGCACCTACTACTATTACTCTCCGCCGCCGCCAGCCCAACCCACCTACACTTACTCCTCCCCACCGCCGCCGGGGGGAATCATCGGACCCGGCGGATACTACCAACCCCCGCCGTACAATAATTACCCAGCCCCCCCGCCGCCGAACCCGATTGTCCCGTATTTCCCATTTTATTACCACACTCCACCGCCGGGCTCCTCCGCCCCCGCCGGCCGTTTGACGAACTCCATGGCCTGCTCTGTTCTTACTGTTGCTCTGTTTTCCTTTTTACTTGCTTTGTTTTAA

mRNA sequence

ATGGAAACTGCCATTTCTCTCAAAATTTTCATCTCTCTCACGGCGGTTCTCCTCATTTTTCCACCCGGATTTTCGTCCCTCACGGTGGCCGACCGTCGGATCTCCGCCGGCGCAAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCCTGCGGCCAGTATCTCTCTCCACCGCCTCCTCCGCCGTCTCCTCCTCCTCCCGTTAACTGCCCGCCGCCGCCTTCTCCCCCCAGCTCCGGCACCTACTACTATTACTCTCCGCCGCCGCCAGCCCAACCCACCTACACTTACTCCTCCCCACCGCCGCCGGGGGGAATCATCGGACCCGGCGGATACTACCAACCCCCGCCGTACAATAATTACCCAGCCCCCCCGCCGCCGAACCCGATTGTCCCGTATTTCCCATTTTATTACCACACTCCACCGCCGGGCTCCTCCGCCCCCGCCGGCCGTTTGACGAACTCCATGGCCTGCTCTGTTCTTACTGTTGCTCTGTTTTCCTTTTTACTTGCTTTGTTTTAA

Coding sequence (CDS)

ATGGAAACTGCCATTTCTCTCAAAATTTTCATCTCTCTCACGGCGGTTCTCCTCATTTTTCCACCCGGATTTTCGTCCCTCACGGTGGCCGACCGTCGGATCTCCGCCGGCGCAAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCCTGCGGCCAGTATCTCTCTCCACCGCCTCCTCCGCCGTCTCCTCCTCCTCCCGTTAACTGCCCGCCGCCGCCTTCTCCCCCCAGCTCCGGCACCTACTACTATTACTCTCCGCCGCCGCCAGCCCAACCCACCTACACTTACTCCTCCCCACCGCCGCCGGGGGGAATCATCGGACCCGGCGGATACTACCAACCCCCGCCGTACAATAATTACCCAGCCCCCCCGCCGCCGAACCCGATTGTCCCGTATTTCCCATTTTATTACCACACTCCACCGCCGGGCTCCTCCGCCCCCGCCGGCCGTTTGACGAACTCCATGGCCTGCTCTGTTCTTACTGTTGCTCTGTTTTCCTTTTTACTTGCTTTGTTTTAA

Protein sequence

METAISLKIFISLTAVLLIFPPGFSSLTVADRRISAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPPVNCPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPPGGIIGPGGYYQPPPYNNYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGRLTNSMACSVLTVALFSFLLALF

Homology

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BLAST of Lsi05G015720 vs. Swiss-Prot
Match: LRX3_ARATH (Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=LRX3 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.5e-06
Identity = 50/109 (45.87%), Postives = 55/109 (50.46%), Query Frame = 1


Query: 53  PCGQYLSPP----PPPPSPPPPVNCPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPPGG 112
           P   + +PP    PPPPSPPPPV  PPPP PP    Y    PPPP  P   YS PPPP  
Sbjct: 413 PAPIFSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPP 472

Query: 113 IIGPGGYYQPPPYNNYP------APPPPNPIVPYFPFYYHTPPPGSSAP 152
              P   Y PPP +  P      +PPPP P  P  P Y   PPP  S+P
Sbjct: 473 PPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPVYSSP 521

[Close]

BLAST of Lsi05G015720 vs. TrEMBL
Match: A0A0A0LAN7_CUCSA (Nutrient reservoir OS=Cucumis sativus GN=Csa_3G165630 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.4e-75
Identity = 152/176 (86.36%), Postives = 159/176 (90.34%), Query Frame = 1


Query: 1   METAISLKIFISLTAVLLIFPPGFSSLTVADRRISAGAKYQIECTMCSACDNPCGQYLSP 60
           MET I L+  ISLTA+LL+FP G SSL V   R SAGAKYQIECTMCSACDNPC QYLSP
Sbjct: 1   METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP 60

Query: 61  PPPPPSPPPPVNCPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPPGGIIGPGGYYQPPP 120
           PPPPPSPPPPVNCPPPPSPPSSGTY YYSPPPPAQP+YTYSSPPPPGGIIGPGGYYQPPP
Sbjct: 61  PPPPPSPPPPVNCPPPPSPPSSGTYDYYSPPPPAQPSYTYSSPPPPGGIIGPGGYYQPPP 120

Query: 121 YNNYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGRLTNSMACSVLTVALFSFLLALF 177
           Y+NYPAPPPPNPIVPYFPF+YHTPPPGSSA   RLTNS+ CSVLTVALFSFLLALF
Sbjct: 121 YSNYPAPPPPNPIVPYFPFFYHTPPPGSSAAVPRLTNSLPCSVLTVALFSFLLALF 176

[Close]

BLAST of Lsi05G015720 vs. TrEMBL
Match: F6H6U0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g01460 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 9.2e-38
Identity = 92/128 (71.88%), Postives = 100/128 (78.12%), Query Frame = 1


Query: 34  ISAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPPV--------NCPPPPSPPSSGTY 93
           ++A +KYQIECTMCSACDNPC Q  SPPPP PSPPPP         NCPPPPSPPS+ TY
Sbjct: 30  VAAKSKYQIECTMCSACDNPCNQVPSPPPPNPSPPPPSPPPPSSSSNCPPPPSPPSNPTY 89

Query: 94  YYYSPPPPAQPTYTYSSPPPPGGIIGPGG---YYQPPPYNNYPAPPPPNPIVPYFPFYYH 151
           YY SPPPP+QPTY YSSPPPP G  G GG    + PPPY NYPAPPPPNPIVPYFPF+YH
Sbjct: 90  YY-SPPPPSQPTYVYSSPPPPNGYNGGGGGGGAFYPPPYQNYPAPPPPNPIVPYFPFWYH 149

[Close]

BLAST of Lsi05G015720 vs. TrEMBL
Match: B9RZK7_RICCO (Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0999350 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.4e-32
Identity = 99/174 (56.90%), Postives = 112/174 (64.37%), Query Frame = 1


Query: 8   KIFISLTAVLLIFPPGFSSLTVADRRISAGAKYQIECTMCSACDNPCGQYLSPPPPPPSP 67
           KI +SL A L++ P    S     R +     YQI CTMCS C NP     SPPPPPPSP
Sbjct: 6   KITLSLLAFLVVLPFTSPSPVPKSRML-----YQIACTMCSTCCNPVP---SPPPPPPSP 65

Query: 68  PPPV---NCPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPPGGIIGPGGYYQPPP---Y 127
           PPP    NCPPPPSPPS    YYYSPPPPA  TYTYSSPPPP G  G G YY  PP   Y
Sbjct: 66  PPPASTNNCPPPPSPPSPSGSYYYSPPPPA--TYTYSSPPPPQGGNGGGSYYYYPPPADY 125

Query: 128 NNYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGRLTNSMACSVLTVALFSFLLAL 176
            NYPAPPPPNPIVPYFPFYY++PPP S + + +LT+S + S     +   LL+L
Sbjct: 126 KNYPAPPPPNPIVPYFPFYYYSPPPPSMSASLKLTSSFSYSTSVAVVMMVLLSL 169

[Close]

BLAST of Lsi05G015720 vs. TrEMBL
Match: A0A061EWK6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021304 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.3e-31
Identity = 103/189 (54.50%), Postives = 115/189 (60.85%), Query Frame = 1


Query: 6   SLKIFISLTAVLLIFPPGFSSLTVADRRISAGA--KYQIECTMCSACDNPCGQYLSPPPP 65
           S +  + +  V+L+ P    +   A+   S  A  KYQIECTMCS+CDNPC Q  SPPPP
Sbjct: 8   SFQTIVVMVVVVLLLP---LAAVCAEESSSPNATSKYQIECTMCSSCDNPCQQVPSPPPP 67

Query: 66  PP-----SPPPPV------NCPPPPSPPSSGT-----YYYYSPPPPAQPTYTYSSPPPPG 125
            P     SPPPP       NCPPPPSPPSSG       YYYSPPPP      Y  PPPPG
Sbjct: 68  SPPPPSPSPPPPPATSNNNNCPPPPSPPSSGGGGGGGSYYYSPPPPQSGGNNYYYPPPPG 127

Query: 126 GIIGPGGYYQPPPYNNYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGRLTNSMACSVLTVA 177
           G+IG G YY PP Y NYP PPPPNPIVPYFPFYYHTPPP S   +G+L   +AC V T A
Sbjct: 128 GVIG-GMYYPPPTYRNYPTPPPPNPIVPYFPFYYHTPPPPSG--SGKL---IACWVSTFA 187

[Close]

BLAST of Lsi05G015720 vs. TrEMBL
Match: V7CAF1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G110300g PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-30
Identity = 92/158 (58.23%), Postives = 105/158 (66.46%), Query Frame = 1


Query: 30  ADRR--ISAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPP--VNCPPPPSPPSSGT- 89
           ADR+  + A +  QI+CTMCS+C+NPC    SPPPPPPSPPPP   NCPPPPSPPSSG  
Sbjct: 20  ADRKHSLKATSHAQIQCTMCSSCENPCNPLPSPPPPPPSPPPPSTTNCPPPPSPPSSGGG 79

Query: 90  ---YYYYSPPPPAQPTYTYSSPPPPGGIIGPGG----YYQPPPYN-NYPAPPPPNPIVPY 149
               YYYSPPP     YTY SPPPP    G GG    YY PPP N NYP PPPPNPIVPY
Sbjct: 80  GGGSYYYSPPPSQ---YTYYSPPPPASTGGGGGGGGIYYYPPPSNGNYPRPPPPNPIVPY 139

Query: 150 FPFYYHTPP-PGSSAPAGRLTNSMACSVLTVALFSFLL 174
           FPFYY++PP  GS APA    + + C++   +   FLL
Sbjct: 140 FPFYYYSPPAQGSGAPAPSTASFLLCAITFSSFLVFLL 174

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BLAST of Lsi05G015720 vs. TAIR10
Match: AT5G49280.1 (AT5G49280.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-26
Identity = 82/141 (58.16%), Postives = 91/141 (64.54%), Query Frame = 1


Query: 42  IECTMCSACDNPCGQYLSPPPPPPSPPPPVN----CPPPPSPPSSG--TYYYYSPPPPAQ 101
           + CTMCS+CDNPC    S PPPP SPPPP      CPPPPSPPSSG  + YYY  PPP+Q
Sbjct: 31  VSCTMCSSCDNPCSPVQSSPPPP-SPPPPSTPTTACPPPPSPPSSGGGSSYYY--PPPSQ 90

Query: 102 PTYTYSSPPPPGGIIGPGGYYQPPPYN-NYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGR 161
                  PPP GG  G  GYY PPPY+ NYP PPPPNPIVPYFPFYYHTPPPGS +    
Sbjct: 91  SGGGSKYPPPYGG--GGQGYYYPPPYSGNYPTPPPPNPIVPYFPFYYHTPPPGSGS---- 150

Query: 162 LTNSMACSVLTVALFSFLLAL 176
               M+   +  ALF+  L L
Sbjct: 151 -DRFMSSYSIIFALFAVFLCL 161

[Close]

BLAST of Lsi05G015720 vs. TAIR10
Match: AT3G06750.1 (AT3G06750.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 101.3 bits (251), Expect = 6.3e-22
Identity = 72/127 (56.69%), Postives = 80/127 (62.99%), Query Frame = 1


Query: 42  IECTMCSACDNPCGQYLSPPPPPPSPPPPVNCPPPPSPPSSGTYYYYSPPPPAQPTYTYS 101
           + CTMCS+CDNPC    +P P   SPPPP     PPS    G  YYYSPPPP+  +    
Sbjct: 30  VSCTMCSSCDNPC----NPVPSSYSPPPP-----PPSSSGGGGSYYYSPPPPSS-SGGVK 89

Query: 102 SPPPPGGIIGPGGYYQPPPYNNYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGRLTNSMAC 161
            PPP GG  G GGYY PP Y NY  PPPPNPIVPYFPFYYHTPP G S  A RL NS+  
Sbjct: 90  YPPPYGGD-GYGGYYPPPYYGNYGTPPPPNPIVPYFPFYYHTPPQGYSGSA-RLQNSLLF 144

Query: 162 SVLTVAL 169
           ++  V L
Sbjct: 150 ALFAVLL 144

[Close]

BLAST of Lsi05G015720 vs. TAIR10
Match: AT4G16140.1 (AT4G16140.1 proline-rich family protein)

HSP 1 Score: 99.0 bits (245), Expect = 3.1e-21
Identity = 70/142 (49.30%), Postives = 80/142 (56.34%), Query Frame = 1


Query: 43  ECTMCSACDNPCGQYLSPPPPP--PSPPPP----VNCPPPPSPPSSGTYYYYSPPPPAQP 102
           +CTMC++CDNPC    SPPPPP  PSPPPP      CPPPPS    G YYYY   PPA  
Sbjct: 30  DCTMCTSCDNPCQPNPSPPPPPSNPSPPPPSPTTTACPPPPSSSGGGPYYYY---PPASQ 89

Query: 103 TYTYSSPPPPGGIIGPGGYYQPPPYN--NYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGR 162
           + +Y  PP        GGYY PPP +  NYP  PPPNPIVPYFPFYY+ PPP S      
Sbjct: 90  SGSYRPPPSSSS----GGYYYPPPKSGGNYPYTPPPNPIVPYFPFYYYNPPPQSVMSGSD 149

Query: 163 LTNSMACSVLTVALFSFLLALF 177
                +  V  + +FS     F
Sbjct: 150 AKIRFSYGVSFILIFSLYFGCF 164

[Close]

BLAST of Lsi05G015720 vs. TAIR10
Match: AT2G43150.1 (AT2G43150.1 Proline-rich extensin-like family protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-09
Identity = 56/118 (47.46%), Postives = 63/118 (53.39%), Query Frame = 1


Query: 53  PCGQYLSPPPP---PP------SPPPPVNCPPPPSPPSSGTYYYYSPPPPAQ---PTYTY 112
           P  +Y SPPPP   PP      SPPPPV  PPPP       YYY+SPPPP +   P Y Y
Sbjct: 38  PPYEYKSPPPPVKSPPPPYEYKSPPPPVKSPPPP-------YYYHSPPPPVKSPPPPYVY 97

Query: 113 SSPPPPGGIIGPGGYYQ--PPPYNNYPAP-----PPPNPIVPYFPFYYHTPPPGSSAP 152
           SSPPPP     P  YY   PPP  + P P     PPP    P  P+YYH+PPP   +P
Sbjct: 98  SSPPPPVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKSP 148

[Close]

BLAST of Lsi05G015720 vs. TAIR10
Match: AT4G13340.1 (AT4G13340.1 Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-07
Identity = 50/109 (45.87%), Postives = 55/109 (50.46%), Query Frame = 1


Query: 53  PCGQYLSPP----PPPPSPPPPVNCPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPPGG 112
           P   + +PP    PPPPSPPPPV  PPPP PP    Y    PPPP  P   YS PPPP  
Sbjct: 413 PAPIFSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPP 472

Query: 113 IIGPGGYYQPPPYNNYP------APPPPNPIVPYFPFYYHTPPPGSSAP 152
              P   Y PPP +  P      +PPPP P  P  P Y   PPP  S+P
Sbjct: 473 PPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPVYSSP 521

[Close]

BLAST of Lsi05G015720 vs. NCBI nr
Match: gi|700202013|gb|KGN57146.1| (Nutrient reservoir [Cucumis sativus])

HSP 1 Score: 290.4 bits (742), Expect = 2.1e-75
Identity = 152/176 (86.36%), Postives = 159/176 (90.34%), Query Frame = 1


Query: 1   METAISLKIFISLTAVLLIFPPGFSSLTVADRRISAGAKYQIECTMCSACDNPCGQYLSP 60
           MET I L+  ISLTA+LL+FP G SSL V   R SAGAKYQIECTMCSACDNPC QYLSP
Sbjct: 1   METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP 60

Query: 61  PPPPPSPPPPVNCPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPPGGIIGPGGYYQPPP 120
           PPPPPSPPPPVNCPPPPSPPSSGTY YYSPPPPAQP+YTYSSPPPPGGIIGPGGYYQPPP
Sbjct: 61  PPPPPSPPPPVNCPPPPSPPSSGTYDYYSPPPPAQPSYTYSSPPPPGGIIGPGGYYQPPP 120

Query: 121 YNNYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGRLTNSMACSVLTVALFSFLLALF 177
           Y+NYPAPPPPNPIVPYFPF+YHTPPPGSSA   RLTNS+ CSVLTVALFSFLLALF
Sbjct: 121 YSNYPAPPPPNPIVPYFPFFYHTPPPGSSAAVPRLTNSLPCSVLTVALFSFLLALF 176

[Close]

BLAST of Lsi05G015720 vs. NCBI nr
Match: gi|659076896|ref|XP_008438921.1| (PREDICTED: extensin-like [Cucumis melo])

HSP 1 Score: 286.2 bits (731), Expect = 3.9e-74
Identity = 153/177 (86.44%), Postives = 158/177 (89.27%), Query Frame = 1


Query: 1   METAISLKIFISLTAVLLIFPPGFSSLTVADRRISAGAKYQIECTMCSACDNPCGQYLSP 60
           ME  ISL+I ISLT +LL+  PG SSL V   R SAGAKYQIECTMCSACDNPCGQYLSP
Sbjct: 1   MEAPISLQILISLTPLLLLLLPGTSSLPVFHPRSSAGAKYQIECTMCSACDNPCGQYLSP 60

Query: 61  PPPPPSPPPPVNCPPPPSPPSSGTYYYYSP-PPPAQPTYTYSSPPPPGGIIGPGGYYQPP 120
           PPPPPSPPPPVNCPPPPSPP+SGTY YYSP PPPAQPTYTYSSPPPP GIIGPGGYYQPP
Sbjct: 61  PPPPPSPPPPVNCPPPPSPPTSGTYDYYSPPPPPAQPTYTYSSPPPPRGIIGPGGYYQPP 120

Query: 121 PYNNYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGRLTNSMACSVLTVALFSFLLALF 177
           PYNNYPAPPPPNPIVPYFPFYYHTPPPGSSA  GRLTNS+ CSVLTVALFSFLL LF
Sbjct: 121 PYNNYPAPPPPNPIVPYFPFYYHTPPPGSSAAVGRLTNSLPCSVLTVALFSFLLVLF 177

[Close]

BLAST of Lsi05G015720 vs. NCBI nr
Match: gi|359477137|ref|XP_002271531.2| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Vitis vinifera])

HSP 1 Score: 169.1 bits (427), Expect = 7.0e-39
Identity = 99/150 (66.00%), Postives = 112/150 (74.67%), Query Frame = 1


Query: 34  ISAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPPV--------NCPPPPSPPSSGTY 93
           ++A +KYQIECTMCSACDNPC Q  SPPPP PSPPPP         NCPPPPSPPS+ TY
Sbjct: 30  VAAKSKYQIECTMCSACDNPCNQVPSPPPPNPSPPPPSPPPPSSSSNCPPPPSPPSNPTY 89

Query: 94  YYYSPPPPAQPTYTYSSPPPPGGIIGPGG---YYQPPPYNNYPAPPPPNPIVPYFPFYYH 153
           YY SPPPP+QPTY YSSPPPP G  G GG    + PPPY NYPAPPPPNPIVPYFPF+YH
Sbjct: 90  YY-SPPPPSQPTYVYSSPPPPNGYNGGGGGGGAFYPPPYQNYPAPPPPNPIVPYFPFWYH 149

Query: 154 TPPPGSSAPAGRLTNSMACSVLTVALFSFL 173
           TPPP S+A +   ++S   +V T+AL S L
Sbjct: 150 TPPPTSAANSVYFSDS---TVYTIALISLL 175

[Close]

BLAST of Lsi05G015720 vs. NCBI nr
Match: gi|1009163439|ref|XP_015899970.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Ziziphus jujuba])

HSP 1 Score: 157.1 bits (396), Expect = 2.7e-35
Identity = 104/184 (56.52%), Postives = 120/184 (65.22%), Query Frame = 1


Query: 1   METAISLKIFISLTAVLLIFPPGFSSLTVADRRISAGAKYQIECTMCSACDNPCGQYLSP 60
           ME+ + L + IS+  +LLI P    S+T         +KYQI CTMCSAC+NPCG   SP
Sbjct: 1   MESTLRLSVCISI--LLLILPVAKPSVT---------SKYQIACTMCSACENPCGSVPSP 60

Query: 61  PPPPPSPPPPVN---CPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPP-----GGIIGP 120
           PPP PSPPPP +   CPPPPS PSSGT Y  SPPPP+QPTYTY SPPPP     GG  G 
Sbjct: 61  PPPSPSPPPPASSTICPPPPSSPSSGTVYN-SPPPPSQPTYTYYSPPPPQSPSGGGGGGG 120

Query: 121 GGYYQPPPYNNYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGRLTNSMACSVLTVALFSFL 177
           G YY PPPY NYP PPPPNPIVPYFPFYY++PPP S + + RL  +   S     +   L
Sbjct: 121 GAYYPPPPYKNYPTPPPPNPIVPYFPFYYYSPPPPSISSSIRLMITTTSSSPVYIIIFTL 172

[Close]

BLAST of Lsi05G015720 vs. NCBI nr
Match: gi|645233320|ref|XP_008223289.1| (PREDICTED: leucine-rich repeat extensin-like protein 5 [Prunus mume])

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 100/172 (58.14%), Postives = 117/172 (68.02%), Query Frame = 1


Query: 16  VLLIFPPGFSSLTVADRRISAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPPV---- 75
           +LL+     ++++    +  A +K QIECTMCS C+NPCGQ  SPPPPPPS PPP     
Sbjct: 13  MLLVMMASTTTMSSPSPKPKATSKDQIECTMCSLCENPCGQVPSPPPPPPSSPPPSPPSS 72

Query: 76  --NCPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPPGGIIGPGGYYQPPPYN-NYPAPP 135
             NCPPPPSPPSSGT  YYSPPPPAQPTY Y  PP  GG  G  G + PPP N NYP PP
Sbjct: 73  SSNCPPPPSPPSSGT-TYYSPPPPAQPTYFYYPPPQGGGGGGGSGAFYPPPNNKNYPVPP 132

Query: 136 PPNPIVPYFPFYYHTPPP--GSSAPAGRLTNS--MACSVLTVALFSFLLALF 177
           PPNPIVPYFPFYY+ PPP   SS+    +T+S  +  SV++VALFS L  LF
Sbjct: 133 PPNPIVPYFPFYYYNPPPHSTSSSSVQLMTSSYPLVYSVVSVALFSVLSCLF 183

The following BLAST results are available for this feature:

BLAST of Lsi05G015720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LRX3_ARATH	3.5e-06	45.87	Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=LRX3 PE=1...	[more]

BLAST of Lsi05G015720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAN7_CUCSA	1.4e-75	86.36	Nutrient reservoir OS=Cucumis sativus GN=Csa_3G165630 PE=4 SV=1	[more]
F6H6U0_VITVI	9.2e-38	71.88	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g01460 PE=4 SV=...	[more]
B9RZK7_RICCO	3.4e-32	56.90	Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0999350 PE=4 SV=1	[more]
A0A061EWK6_THECC	1.3e-31	54.50	Uncharacterized protein OS=Theobroma cacao GN=TCM_021304 PE=4 SV=1	[more]
V7CAF1_PHAVU	1.4e-30	58.23	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G110300g PE=4 SV=1	[more]

BLAST of Lsi05G015720 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G49280.1	1.1e-26	58.16	hydroxyproline-rich glycoprotein family protein	[more]
AT3G06750.1	6.3e-22	56.69	hydroxyproline-rich glycoprotein family protein	[more]
AT4G16140.1	3.1e-21	49.30	proline-rich family protein	[more]
AT2G43150.1	1.6e-09	47.46	Proline-rich extensin-like family protein	[more]
AT4G13340.1	2.0e-07	45.87	Leucine-rich repeat (LRR) family protein	[more]

BLAST of Lsi05G015720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202013\|gb\|KGN57146.1\|	2.1e-75	86.36	Nutrient reservoir [Cucumis sativus]	[more]
gi\|659076896\|ref\|XP_008438921.1\|	3.9e-74	86.44	PREDICTED: extensin-like [Cucumis melo]	[more]
gi\|359477137\|ref\|XP_002271531.2\|	7.0e-39	66.00	PREDICTED: leucine-rich repeat extensin-like protein 3 [Vitis vinifera]	[more]
gi\|1009163439\|ref\|XP_015899970.1\|	2.7e-35	56.52	PREDICTED: leucine-rich repeat extensin-like protein 3 [Ziziphus jujuba]	[more]
gi\|645233320\|ref\|XP_008223289.1\|	1.2e-33	58.14	PREDICTED: leucine-rich repeat extensin-like protein 5 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G015720.1	Lsi05G015720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 115..132 score: 3.0E-11coord: 89..105 score: 3.0E-11coord: 58..79 score: 3.0
None	No IPR available	PANTHER	PTHR35487	FAMILY NOT NAMED	coord: 11..176 score: 1.3
None	No IPR available	PANTHER	PTHR35487:SF1	F3E22.11 PROTEIN	coord: 11..176 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G015720	Csa3G165630	Cucumber (Chinese Long) v2	culsiB199
Lsi05G015720	CSPI03G14790	Wild cucumber (PI 183967)	cpilsiB198
Lsi05G015720	Cucsa.252740	Cucumber (Gy14) v1	cgylsiB420
Lsi05G015720	CmoCh14G016340	Cucurbita moschata (Rifu)	cmolsiB238
Lsi05G015720	Cla021772	Watermelon (97103) v1	lsiwmB362
Lsi05G015720	Cla97C05G087940	Watermelon (97103) v2	lsiwmbB330
Lsi05G015720	Bhi01G000757	Wax gourd	lsiwgoB432
Lsi05G015720	Cp4.1LG03g11530	Cucurbita pepo (Zucchini)	cpelsiB512
Lsi05G015720	CsGy3G014910	Cucumber (Gy14) v2	cgyblsiB184
Lsi05G015720	CsaV3_3G014990	Cucumber (Chinese Long) v3	cuclsiB218

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G015720	Cucumber (Gy14) v2	cgyblsiB054
Lsi05G015720	Cucumber (Gy14) v2	cgyblsiB431
Lsi05G015720	Melon (DHL92) v3.6.1	lsimedB359
Lsi05G015720	Melon (DHL92) v3.6.1	lsimedB364
Lsi05G015720	Melon (DHL92) v3.6.1	lsimedB385
Lsi05G015720	Silver-seed gourd	carlsiB065
Lsi05G015720	Silver-seed gourd	carlsiB254
Lsi05G015720	Silver-seed gourd	carlsiB642
Lsi05G015720	Silver-seed gourd	carlsiB869
Lsi05G015720	Cucumber (Chinese Long) v3	cuclsiB067
Lsi05G015720	Cucumber (Chinese Long) v3	cuclsiB492
Lsi05G015720	Watermelon (97103) v2	lsiwmbB344
Lsi05G015720	Bottle gourd (USVL1VR-Ls)	lsilsiB006
Lsi05G015720	Bottle gourd (USVL1VR-Ls)	lsilsiB161
Lsi05G015720	Cucumber (Gy14) v1	cgylsiB069
Lsi05G015720	Cucurbita maxima (Rimu)	cmalsiB002
Lsi05G015720	Cucurbita maxima (Rimu)	cmalsiB250
Lsi05G015720	Cucurbita maxima (Rimu)	cmalsiB353
Lsi05G015720	Cucurbita maxima (Rimu)	cmalsiB757
Lsi05G015720	Cucurbita maxima (Rimu)	cmalsiB834
Lsi05G015720	Cucurbita moschata (Rifu)	cmolsiB342
Lsi05G015720	Cucurbita moschata (Rifu)	cmolsiB752
Lsi05G015720	Cucurbita moschata (Rifu)	cmolsiB819
Lsi05G015720	Cucurbita pepo (Zucchini)	cpelsiB118
Lsi05G015720	Cucurbita pepo (Zucchini)	cpelsiB268
Lsi05G015720	Cucurbita pepo (Zucchini)	cpelsiB718
Lsi05G015720	Wild cucumber (PI 183967)	cpilsiB471
Lsi05G015720	Cucumber (Chinese Long) v2	culsiB463
Lsi05G015720	Melon (DHL92) v3.5.1	lsimeB342
Lsi05G015720	Melon (DHL92) v3.5.1	lsimeB369
Lsi05G015720	Watermelon (Charleston Gray)	lsiwcgB333
Lsi05G015720	Watermelon (Charleston Gray)	lsiwcgB345
Lsi05G015720	Watermelon (97103) v1	lsiwmB384