Lsi05G015720 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G015720
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionNutrient reservoir
Locationchr05 : 23483743 .. 23484273 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACTGCCATTTCTCTCAAAATTTTCATCTCTCTCACGGCGGTTCTCCTCATTTTTCCACCCGGATTTTCGTCCCTCACGGTGGCCGACCGTCGGATCTCCGCCGGCGCAAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCCTGCGGCCAGTATCTCTCTCCACCGCCTCCTCCGCCGTCTCCTCCTCCTCCCGTTAACTGCCCGCCGCCGCCTTCTCCCCCCAGCTCCGGCACCTACTACTATTACTCTCCGCCGCCGCCAGCCCAACCCACCTACACTTACTCCTCCCCACCGCCGCCGGGGGGAATCATCGGACCCGGCGGATACTACCAACCCCCGCCGTACAATAATTACCCAGCCCCCCCGCCGCCGAACCCGATTGTCCCGTATTTCCCATTTTATTACCACACTCCACCGCCGGGCTCCTCCGCCCCCGCCGGCCGTTTGACGAACTCCATGGCCTGCTCTGTTCTTACTGTTGCTCTGTTTTCCTTTTTACTTGCTTTGTTTTAA

mRNA sequence

ATGGAAACTGCCATTTCTCTCAAAATTTTCATCTCTCTCACGGCGGTTCTCCTCATTTTTCCACCCGGATTTTCGTCCCTCACGGTGGCCGACCGTCGGATCTCCGCCGGCGCAAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCCTGCGGCCAGTATCTCTCTCCACCGCCTCCTCCGCCGTCTCCTCCTCCTCCCGTTAACTGCCCGCCGCCGCCTTCTCCCCCCAGCTCCGGCACCTACTACTATTACTCTCCGCCGCCGCCAGCCCAACCCACCTACACTTACTCCTCCCCACCGCCGCCGGGGGGAATCATCGGACCCGGCGGATACTACCAACCCCCGCCGTACAATAATTACCCAGCCCCCCCGCCGCCGAACCCGATTGTCCCGTATTTCCCATTTTATTACCACACTCCACCGCCGGGCTCCTCCGCCCCCGCCGGCCGTTTGACGAACTCCATGGCCTGCTCTGTTCTTACTGTTGCTCTGTTTTCCTTTTTACTTGCTTTGTTTTAA

Coding sequence (CDS)

ATGGAAACTGCCATTTCTCTCAAAATTTTCATCTCTCTCACGGCGGTTCTCCTCATTTTTCCACCCGGATTTTCGTCCCTCACGGTGGCCGACCGTCGGATCTCCGCCGGCGCAAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCCTGCGGCCAGTATCTCTCTCCACCGCCTCCTCCGCCGTCTCCTCCTCCTCCCGTTAACTGCCCGCCGCCGCCTTCTCCCCCCAGCTCCGGCACCTACTACTATTACTCTCCGCCGCCGCCAGCCCAACCCACCTACACTTACTCCTCCCCACCGCCGCCGGGGGGAATCATCGGACCCGGCGGATACTACCAACCCCCGCCGTACAATAATTACCCAGCCCCCCCGCCGCCGAACCCGATTGTCCCGTATTTCCCATTTTATTACCACACTCCACCGCCGGGCTCCTCCGCCCCCGCCGGCCGTTTGACGAACTCCATGGCCTGCTCTGTTCTTACTGTTGCTCTGTTTTCCTTTTTACTTGCTTTGTTTTAA

Protein sequence

METAISLKIFISLTAVLLIFPPGFSSLTVADRRISAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPPVNCPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPPGGIIGPGGYYQPPPYNNYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGRLTNSMACSVLTVALFSFLLALF
Homology
[Close]
BLAST of Lsi05G015720 vs. Swiss-Prot
Match: LRX3_ARATH (Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=LRX3 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.5e-06
Identity = 50/109 (45.87%), Postives = 55/109 (50.46%), Query Frame = 1 

Query: 53  PCGQYLSPP----PPPPSPPPPVNCPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPPGG 112
           P   + +PP    PPPPSPPPPV  PPPP PP    Y    PPPP  P   YS PPPP  
Sbjct: 413 PAPIFSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPP 472

Query: 113 IIGPGGYYQPPPYNNYP------APPPPNPIVPYFPFYYHTPPPGSSAP 152
              P   Y PPP +  P      +PPPP P  P  P Y   PPP  S+P
Sbjct: 473 PPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPVYSSP 521

[Close]
BLAST of Lsi05G015720 vs. TrEMBL
Match: A0A0A0LAN7_CUCSA (Nutrient reservoir OS=Cucumis sativus GN=Csa_3G165630 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.4e-75
Identity = 152/176 (86.36%), Postives = 159/176 (90.34%), Query Frame = 1 

Query: 1   METAISLKIFISLTAVLLIFPPGFSSLTVADRRISAGAKYQIECTMCSACDNPCGQYLSP 60
           MET I L+  ISLTA+LL+FP G SSL V   R SAGAKYQIECTMCSACDNPC QYLSP
Sbjct: 1   METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP 60

Query: 61  PPPPPSPPPPVNCPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPPGGIIGPGGYYQPPP 120
           PPPPPSPPPPVNCPPPPSPPSSGTY YYSPPPPAQP+YTYSSPPPPGGIIGPGGYYQPPP
Sbjct: 61  PPPPPSPPPPVNCPPPPSPPSSGTYDYYSPPPPAQPSYTYSSPPPPGGIIGPGGYYQPPP 120

Query: 121 YNNYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGRLTNSMACSVLTVALFSFLLALF 177
           Y+NYPAPPPPNPIVPYFPF+YHTPPPGSSA   RLTNS+ CSVLTVALFSFLLALF
Sbjct: 121 YSNYPAPPPPNPIVPYFPFFYHTPPPGSSAAVPRLTNSLPCSVLTVALFSFLLALF 176

[Close]
BLAST of Lsi05G015720 vs. TrEMBL
Match: F6H6U0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g01460 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 9.2e-38
Identity = 92/128 (71.88%), Postives = 100/128 (78.12%), Query Frame = 1 

Query: 34  ISAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPPV--------NCPPPPSPPSSGTY 93
           ++A +KYQIECTMCSACDNPC Q  SPPPP PSPPPP         NCPPPPSPPS+ TY
Sbjct: 30  VAAKSKYQIECTMCSACDNPCNQVPSPPPPNPSPPPPSPPPPSSSSNCPPPPSPPSNPTY 89

Query: 94  YYYSPPPPAQPTYTYSSPPPPGGIIGPGG---YYQPPPYNNYPAPPPPNPIVPYFPFYYH 151
           YY SPPPP+QPTY YSSPPPP G  G GG    + PPPY NYPAPPPPNPIVPYFPF+YH
Sbjct: 90  YY-SPPPPSQPTYVYSSPPPPNGYNGGGGGGGAFYPPPYQNYPAPPPPNPIVPYFPFWYH 149

[Close]
BLAST of Lsi05G015720 vs. TrEMBL
Match: B9RZK7_RICCO (Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0999350 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.4e-32
Identity = 99/174 (56.90%), Postives = 112/174 (64.37%), Query Frame = 1 

Query: 8   KIFISLTAVLLIFPPGFSSLTVADRRISAGAKYQIECTMCSACDNPCGQYLSPPPPPPSP 67
           KI +SL A L++ P    S     R +     YQI CTMCS C NP     SPPPPPPSP
Sbjct: 6   KITLSLLAFLVVLPFTSPSPVPKSRML-----YQIACTMCSTCCNPVP---SPPPPPPSP 65

Query: 68  PPPV---NCPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPPGGIIGPGGYYQPPP---Y 127
           PPP    NCPPPPSPPS    YYYSPPPPA  TYTYSSPPPP G  G G YY  PP   Y
Sbjct: 66  PPPASTNNCPPPPSPPSPSGSYYYSPPPPA--TYTYSSPPPPQGGNGGGSYYYYPPPADY 125

Query: 128 NNYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGRLTNSMACSVLTVALFSFLLAL 176
            NYPAPPPPNPIVPYFPFYY++PPP S + + +LT+S + S     +   LL+L
Sbjct: 126 KNYPAPPPPNPIVPYFPFYYYSPPPPSMSASLKLTSSFSYSTSVAVVMMVLLSL 169

[Close]
BLAST of Lsi05G015720 vs. TrEMBL
Match: A0A061EWK6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021304 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.3e-31
Identity = 103/189 (54.50%), Postives = 115/189 (60.85%), Query Frame = 1 

Query: 6   SLKIFISLTAVLLIFPPGFSSLTVADRRISAGA--KYQIECTMCSACDNPCGQYLSPPPP 65
           S +  + +  V+L+ P    +   A+   S  A  KYQIECTMCS+CDNPC Q  SPPPP
Sbjct: 8   SFQTIVVMVVVVLLLP---LAAVCAEESSSPNATSKYQIECTMCSSCDNPCQQVPSPPPP 67

Query: 66  PP-----SPPPPV------NCPPPPSPPSSGT-----YYYYSPPPPAQPTYTYSSPPPPG 125
            P     SPPPP       NCPPPPSPPSSG       YYYSPPPP      Y  PPPPG
Sbjct: 68  SPPPPSPSPPPPPATSNNNNCPPPPSPPSSGGGGGGGSYYYSPPPPQSGGNNYYYPPPPG 127

Query: 126 GIIGPGGYYQPPPYNNYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGRLTNSMACSVLTVA 177
           G+IG G YY PP Y NYP PPPPNPIVPYFPFYYHTPPP S   +G+L   +AC V T A
Sbjct: 128 GVIG-GMYYPPPTYRNYPTPPPPNPIVPYFPFYYHTPPPPSG--SGKL---IACWVSTFA 187

[Close]
BLAST of Lsi05G015720 vs. TrEMBL
Match: V7CAF1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G110300g PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-30
Identity = 92/158 (58.23%), Postives = 105/158 (66.46%), Query Frame = 1 

Query: 30  ADRR--ISAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPP--VNCPPPPSPPSSGT- 89
           ADR+  + A +  QI+CTMCS+C+NPC    SPPPPPPSPPPP   NCPPPPSPPSSG  
Sbjct: 20  ADRKHSLKATSHAQIQCTMCSSCENPCNPLPSPPPPPPSPPPPSTTNCPPPPSPPSSGGG 79

Query: 90  ---YYYYSPPPPAQPTYTYSSPPPPGGIIGPGG----YYQPPPYN-NYPAPPPPNPIVPY 149
               YYYSPPP     YTY SPPPP    G GG    YY PPP N NYP PPPPNPIVPY
Sbjct: 80  GGGSYYYSPPPSQ---YTYYSPPPPASTGGGGGGGGIYYYPPPSNGNYPRPPPPNPIVPY 139

Query: 150 FPFYYHTPP-PGSSAPAGRLTNSMACSVLTVALFSFLL 174
           FPFYY++PP  GS APA    + + C++   +   FLL
Sbjct: 140 FPFYYYSPPAQGSGAPAPSTASFLLCAITFSSFLVFLL 174

[Close]
BLAST of Lsi05G015720 vs. TAIR10
Match: AT5G49280.1 (AT5G49280.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-26
Identity = 82/141 (58.16%), Postives = 91/141 (64.54%), Query Frame = 1 

Query: 42  IECTMCSACDNPCGQYLSPPPPPPSPPPPVN----CPPPPSPPSSG--TYYYYSPPPPAQ 101
           + CTMCS+CDNPC    S PPPP SPPPP      CPPPPSPPSSG  + YYY  PPP+Q
Sbjct: 31  VSCTMCSSCDNPCSPVQSSPPPP-SPPPPSTPTTACPPPPSPPSSGGGSSYYY--PPPSQ 90

Query: 102 PTYTYSSPPPPGGIIGPGGYYQPPPYN-NYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGR 161
                  PPP GG  G  GYY PPPY+ NYP PPPPNPIVPYFPFYYHTPPPGS +    
Sbjct: 91  SGGGSKYPPPYGG--GGQGYYYPPPYSGNYPTPPPPNPIVPYFPFYYHTPPPGSGS---- 150

Query: 162 LTNSMACSVLTVALFSFLLAL 176
               M+   +  ALF+  L L
Sbjct: 151 -DRFMSSYSIIFALFAVFLCL 161

[Close]
BLAST of Lsi05G015720 vs. TAIR10
Match: AT3G06750.1 (AT3G06750.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 101.3 bits (251), Expect = 6.3e-22
Identity = 72/127 (56.69%), Postives = 80/127 (62.99%), Query Frame = 1 

Query: 42  IECTMCSACDNPCGQYLSPPPPPPSPPPPVNCPPPPSPPSSGTYYYYSPPPPAQPTYTYS 101
           + CTMCS+CDNPC    +P P   SPPPP     PPS    G  YYYSPPPP+  +    
Sbjct: 30  VSCTMCSSCDNPC----NPVPSSYSPPPP-----PPSSSGGGGSYYYSPPPPSS-SGGVK 89

Query: 102 SPPPPGGIIGPGGYYQPPPYNNYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGRLTNSMAC 161
            PPP GG  G GGYY PP Y NY  PPPPNPIVPYFPFYYHTPP G S  A RL NS+  
Sbjct: 90  YPPPYGGD-GYGGYYPPPYYGNYGTPPPPNPIVPYFPFYYHTPPQGYSGSA-RLQNSLLF 144

Query: 162 SVLTVAL 169
           ++  V L
Sbjct: 150 ALFAVLL 144

[Close]
BLAST of Lsi05G015720 vs. TAIR10
Match: AT4G16140.1 (AT4G16140.1 proline-rich family protein)

HSP 1 Score: 99.0 bits (245), Expect = 3.1e-21
Identity = 70/142 (49.30%), Postives = 80/142 (56.34%), Query Frame = 1 

Query: 43  ECTMCSACDNPCGQYLSPPPPP--PSPPPP----VNCPPPPSPPSSGTYYYYSPPPPAQP 102
           +CTMC++CDNPC    SPPPPP  PSPPPP      CPPPPS    G YYYY   PPA  
Sbjct: 30  DCTMCTSCDNPCQPNPSPPPPPSNPSPPPPSPTTTACPPPPSSSGGGPYYYY---PPASQ 89

Query: 103 TYTYSSPPPPGGIIGPGGYYQPPPYN--NYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGR 162
           + +Y  PP        GGYY PPP +  NYP  PPPNPIVPYFPFYY+ PPP S      
Sbjct: 90  SGSYRPPPSSSS----GGYYYPPPKSGGNYPYTPPPNPIVPYFPFYYYNPPPQSVMSGSD 149

Query: 163 LTNSMACSVLTVALFSFLLALF 177
                +  V  + +FS     F
Sbjct: 150 AKIRFSYGVSFILIFSLYFGCF 164

[Close]
BLAST of Lsi05G015720 vs. TAIR10
Match: AT2G43150.1 (AT2G43150.1 Proline-rich extensin-like family protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-09
Identity = 56/118 (47.46%), Postives = 63/118 (53.39%), Query Frame = 1 

Query: 53  PCGQYLSPPPP---PP------SPPPPVNCPPPPSPPSSGTYYYYSPPPPAQ---PTYTY 112
           P  +Y SPPPP   PP      SPPPPV  PPPP       YYY+SPPPP +   P Y Y
Sbjct: 38  PPYEYKSPPPPVKSPPPPYEYKSPPPPVKSPPPP-------YYYHSPPPPVKSPPPPYVY 97

Query: 113 SSPPPPGGIIGPGGYYQ--PPPYNNYPAP-----PPPNPIVPYFPFYYHTPPPGSSAP 152
           SSPPPP     P  YY   PPP  + P P     PPP    P  P+YYH+PPP   +P
Sbjct: 98  SSPPPPVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKSPPPPYYYHSPPPPVKSP 148

[Close]
BLAST of Lsi05G015720 vs. TAIR10
Match: AT4G13340.1 (AT4G13340.1 Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-07
Identity = 50/109 (45.87%), Postives = 55/109 (50.46%), Query Frame = 1 

Query: 53  PCGQYLSPP----PPPPSPPPPVNCPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPPGG 112
           P   + +PP    PPPPSPPPPV  PPPP PP    Y    PPPP  P   YS PPPP  
Sbjct: 413 PAPIFSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPP 472

Query: 113 IIGPGGYYQPPPYNNYP------APPPPNPIVPYFPFYYHTPPPGSSAP 152
              P   Y PPP +  P      +PPPP P  P  P Y   PPP  S+P
Sbjct: 473 PPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPVYSSP 521

[Close]
BLAST of Lsi05G015720 vs. NCBI nr
Match: gi|700202013|gb|KGN57146.1| (Nutrient reservoir [Cucumis sativus])

HSP 1 Score: 290.4 bits (742), Expect = 2.1e-75
Identity = 152/176 (86.36%), Postives = 159/176 (90.34%), Query Frame = 1 

Query: 1   METAISLKIFISLTAVLLIFPPGFSSLTVADRRISAGAKYQIECTMCSACDNPCGQYLSP 60
           MET I L+  ISLTA+LL+FP G SSL V   R SAGAKYQIECTMCSACDNPC QYLSP
Sbjct: 1   METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSP 60

Query: 61  PPPPPSPPPPVNCPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPPGGIIGPGGYYQPPP 120
           PPPPPSPPPPVNCPPPPSPPSSGTY YYSPPPPAQP+YTYSSPPPPGGIIGPGGYYQPPP
Sbjct: 61  PPPPPSPPPPVNCPPPPSPPSSGTYDYYSPPPPAQPSYTYSSPPPPGGIIGPGGYYQPPP 120

Query: 121 YNNYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGRLTNSMACSVLTVALFSFLLALF 177
           Y+NYPAPPPPNPIVPYFPF+YHTPPPGSSA   RLTNS+ CSVLTVALFSFLLALF
Sbjct: 121 YSNYPAPPPPNPIVPYFPFFYHTPPPGSSAAVPRLTNSLPCSVLTVALFSFLLALF 176

[Close]
BLAST of Lsi05G015720 vs. NCBI nr
Match: gi|659076896|ref|XP_008438921.1| (PREDICTED: extensin-like [Cucumis melo])

HSP 1 Score: 286.2 bits (731), Expect = 3.9e-74
Identity = 153/177 (86.44%), Postives = 158/177 (89.27%), Query Frame = 1 

Query: 1   METAISLKIFISLTAVLLIFPPGFSSLTVADRRISAGAKYQIECTMCSACDNPCGQYLSP 60
           ME  ISL+I ISLT +LL+  PG SSL V   R SAGAKYQIECTMCSACDNPCGQYLSP
Sbjct: 1   MEAPISLQILISLTPLLLLLLPGTSSLPVFHPRSSAGAKYQIECTMCSACDNPCGQYLSP 60

Query: 61  PPPPPSPPPPVNCPPPPSPPSSGTYYYYSP-PPPAQPTYTYSSPPPPGGIIGPGGYYQPP 120
           PPPPPSPPPPVNCPPPPSPP+SGTY YYSP PPPAQPTYTYSSPPPP GIIGPGGYYQPP
Sbjct: 61  PPPPPSPPPPVNCPPPPSPPTSGTYDYYSPPPPPAQPTYTYSSPPPPRGIIGPGGYYQPP 120

Query: 121 PYNNYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGRLTNSMACSVLTVALFSFLLALF 177
           PYNNYPAPPPPNPIVPYFPFYYHTPPPGSSA  GRLTNS+ CSVLTVALFSFLL LF
Sbjct: 121 PYNNYPAPPPPNPIVPYFPFYYHTPPPGSSAAVGRLTNSLPCSVLTVALFSFLLVLF 177

[Close]
BLAST of Lsi05G015720 vs. NCBI nr
Match: gi|359477137|ref|XP_002271531.2| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Vitis vinifera])

HSP 1 Score: 169.1 bits (427), Expect = 7.0e-39
Identity = 99/150 (66.00%), Postives = 112/150 (74.67%), Query Frame = 1 

Query: 34  ISAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPPV--------NCPPPPSPPSSGTY 93
           ++A +KYQIECTMCSACDNPC Q  SPPPP PSPPPP         NCPPPPSPPS+ TY
Sbjct: 30  VAAKSKYQIECTMCSACDNPCNQVPSPPPPNPSPPPPSPPPPSSSSNCPPPPSPPSNPTY 89

Query: 94  YYYSPPPPAQPTYTYSSPPPPGGIIGPGG---YYQPPPYNNYPAPPPPNPIVPYFPFYYH 153
           YY SPPPP+QPTY YSSPPPP G  G GG    + PPPY NYPAPPPPNPIVPYFPF+YH
Sbjct: 90  YY-SPPPPSQPTYVYSSPPPPNGYNGGGGGGGAFYPPPYQNYPAPPPPNPIVPYFPFWYH 149

Query: 154 TPPPGSSAPAGRLTNSMACSVLTVALFSFL 173
           TPPP S+A +   ++S   +V T+AL S L
Sbjct: 150 TPPPTSAANSVYFSDS---TVYTIALISLL 175

[Close]
BLAST of Lsi05G015720 vs. NCBI nr
Match: gi|1009163439|ref|XP_015899970.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Ziziphus jujuba])

HSP 1 Score: 157.1 bits (396), Expect = 2.7e-35
Identity = 104/184 (56.52%), Postives = 120/184 (65.22%), Query Frame = 1 

Query: 1   METAISLKIFISLTAVLLIFPPGFSSLTVADRRISAGAKYQIECTMCSACDNPCGQYLSP 60
           ME+ + L + IS+  +LLI P    S+T         +KYQI CTMCSAC+NPCG   SP
Sbjct: 1   MESTLRLSVCISI--LLLILPVAKPSVT---------SKYQIACTMCSACENPCGSVPSP 60

Query: 61  PPPPPSPPPPVN---CPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPP-----GGIIGP 120
           PPP PSPPPP +   CPPPPS PSSGT Y  SPPPP+QPTYTY SPPPP     GG  G 
Sbjct: 61  PPPSPSPPPPASSTICPPPPSSPSSGTVYN-SPPPPSQPTYTYYSPPPPQSPSGGGGGGG 120

Query: 121 GGYYQPPPYNNYPAPPPPNPIVPYFPFYYHTPPPGSSAPAGRLTNSMACSVLTVALFSFL 177
           G YY PPPY NYP PPPPNPIVPYFPFYY++PPP S + + RL  +   S     +   L
Sbjct: 121 GAYYPPPPYKNYPTPPPPNPIVPYFPFYYYSPPPPSISSSIRLMITTTSSSPVYIIIFTL 172

[Close]
BLAST of Lsi05G015720 vs. NCBI nr
Match: gi|645233320|ref|XP_008223289.1| (PREDICTED: leucine-rich repeat extensin-like protein 5 [Prunus mume])

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 100/172 (58.14%), Postives = 117/172 (68.02%), Query Frame = 1 

Query: 16  VLLIFPPGFSSLTVADRRISAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPPV---- 75
           +LL+     ++++    +  A +K QIECTMCS C+NPCGQ  SPPPPPPS PPP     
Sbjct: 13  MLLVMMASTTTMSSPSPKPKATSKDQIECTMCSLCENPCGQVPSPPPPPPSSPPPSPPSS 72

Query: 76  --NCPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPPGGIIGPGGYYQPPPYN-NYPAPP 135
             NCPPPPSPPSSGT  YYSPPPPAQPTY Y  PP  GG  G  G + PPP N NYP PP
Sbjct: 73  SSNCPPPPSPPSSGT-TYYSPPPPAQPTYFYYPPPQGGGGGGGSGAFYPPPNNKNYPVPP 132

Query: 136 PPNPIVPYFPFYYHTPPP--GSSAPAGRLTNS--MACSVLTVALFSFLLALF 177
           PPNPIVPYFPFYY+ PPP   SS+    +T+S  +  SV++VALFS L  LF
Sbjct: 133 PPNPIVPYFPFYYYNPPPHSTSSSSVQLMTSSYPLVYSVVSVALFSVLSCLF 183

The following BLAST results are available for this feature:
BLAST of Lsi05G015720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LRX3_ARATH3.5e-0645.87Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=LRX3 PE=1... [more]
BLAST of Lsi05G015720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAN7_CUCSA1.4e-7586.36Nutrient reservoir OS=Cucumis sativus GN=Csa_3G165630 PE=4 SV=1[more]
F6H6U0_VITVI9.2e-3871.88Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g01460 PE=4 SV=... [more]
B9RZK7_RICCO3.4e-3256.90Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0999350 PE=4 SV=1[more]
A0A061EWK6_THECC1.3e-3154.50Uncharacterized protein OS=Theobroma cacao GN=TCM_021304 PE=4 SV=1[more]
V7CAF1_PHAVU1.4e-3058.23Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G110300g PE=4 SV=1[more]
BLAST of Lsi05G015720 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G49280.11.1e-2658.16 hydroxyproline-rich glycoprotein family protein[more]
AT3G06750.16.3e-2256.69 hydroxyproline-rich glycoprotein family protein[more]
AT4G16140.13.1e-2149.30 proline-rich family protein[more]
AT2G43150.11.6e-0947.46 Proline-rich extensin-like family protein[more]
AT4G13340.12.0e-0745.87 Leucine-rich repeat (LRR) family protein[more]
BLAST of Lsi05G015720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202013|gb|KGN57146.1|2.1e-7586.36Nutrient reservoir [Cucumis sativus][more]
gi|659076896|ref|XP_008438921.1|3.9e-7486.44PREDICTED: extensin-like [Cucumis melo][more]
gi|359477137|ref|XP_002271531.2|7.0e-3966.00PREDICTED: leucine-rich repeat extensin-like protein 3 [Vitis vinifera][more]
gi|1009163439|ref|XP_015899970.1|2.7e-3556.52PREDICTED: leucine-rich repeat extensin-like protein 3 [Ziziphus jujuba][more]
gi|645233320|ref|XP_008223289.1|1.2e-3358.14PREDICTED: leucine-rich repeat extensin-like protein 5 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G015720.1Lsi05G015720.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 115..132
score: 3.0E-11coord: 89..105
score: 3.0E-11coord: 58..79
score: 3.0
NoneNo IPR availablePANTHERPTHR35487FAMILY NOT NAMEDcoord: 11..176
score: 1.3
NoneNo IPR availablePANTHERPTHR35487:SF1F3E22.11 PROTEINcoord: 11..176
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G015720Csa3G165630Cucumber (Chinese Long) v2culsiB199
Lsi05G015720CSPI03G14790Wild cucumber (PI 183967)cpilsiB198
Lsi05G015720Cucsa.252740Cucumber (Gy14) v1cgylsiB420
Lsi05G015720CmoCh14G016340Cucurbita moschata (Rifu)cmolsiB238
Lsi05G015720Cla021772Watermelon (97103) v1lsiwmB362
Lsi05G015720Cla97C05G087940Watermelon (97103) v2lsiwmbB330
Lsi05G015720Bhi01G000757Wax gourdlsiwgoB432
Lsi05G015720Cp4.1LG03g11530Cucurbita pepo (Zucchini)cpelsiB512
Lsi05G015720CsGy3G014910Cucumber (Gy14) v2cgyblsiB184
Lsi05G015720CsaV3_3G014990Cucumber (Chinese Long) v3cuclsiB218
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G015720Bottle gourd (USVL1VR-Ls)lsilsiB006
Lsi05G015720Bottle gourd (USVL1VR-Ls)lsilsiB161
Lsi05G015720Cucumber (Gy14) v1cgylsiB069
Lsi05G015720Cucurbita maxima (Rimu)cmalsiB002
Lsi05G015720Cucurbita maxima (Rimu)cmalsiB250
Lsi05G015720Cucurbita maxima (Rimu)cmalsiB353
Lsi05G015720Cucurbita maxima (Rimu)cmalsiB757
Lsi05G015720Cucurbita maxima (Rimu)cmalsiB834
Lsi05G015720Cucurbita moschata (Rifu)cmolsiB342
Lsi05G015720Cucurbita moschata (Rifu)cmolsiB752
Lsi05G015720Cucurbita moschata (Rifu)cmolsiB819
Lsi05G015720Cucurbita pepo (Zucchini)cpelsiB118
Lsi05G015720Cucurbita pepo (Zucchini)cpelsiB268
Lsi05G015720Cucurbita pepo (Zucchini)cpelsiB718
Lsi05G015720Wild cucumber (PI 183967)cpilsiB471
Lsi05G015720Cucumber (Chinese Long) v2culsiB463
Lsi05G015720Melon (DHL92) v3.5.1lsimeB342
Lsi05G015720Melon (DHL92) v3.5.1lsimeB369
Lsi05G015720Watermelon (Charleston Gray)lsiwcgB333
Lsi05G015720Watermelon (Charleston Gray)lsiwcgB345
Lsi05G015720Watermelon (97103) v1lsiwmB384
Lsi05G015720Cucumber (Gy14) v2cgyblsiB054
Lsi05G015720Cucumber (Gy14) v2cgyblsiB431
Lsi05G015720Melon (DHL92) v3.6.1lsimedB359
Lsi05G015720Melon (DHL92) v3.6.1lsimedB364
Lsi05G015720Melon (DHL92) v3.6.1lsimedB385
Lsi05G015720Silver-seed gourdcarlsiB065
Lsi05G015720Silver-seed gourdcarlsiB254
Lsi05G015720Silver-seed gourdcarlsiB642
Lsi05G015720Silver-seed gourdcarlsiB869
Lsi05G015720Cucumber (Chinese Long) v3cuclsiB067
Lsi05G015720Cucumber (Chinese Long) v3cuclsiB492
Lsi05G015720Watermelon (97103) v2lsiwmbB344