Cla97C05G087940 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G087940
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	leucine-rich repeat extensin-like protein 3
Location	Cla97Chr05 : 6044820 .. 6045350 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACCGCCATTTCTCTCAAAATTTTCATCTCTCTCGCGGCGGTTCTCCTCAGTTTTCCACCAGGATTTTCATCCCTCCCGGTGGCCGACCGGCGGATCTCCGCCGGCGCAAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCCTGTGGCCAGTATCTCTCTCCGCCCCCTCCTCCGCCGTCTCCTCCTCCGCCCGTCAACTGCCCGCCGCCGCCTTCTCCCCCCAGTTCCGGCACTTACTACTATTATTCTCCGCCCCCTCCAGCCCAACCCACCTACACTTACTCCTCCCCACCGCCGCCGCGTGGAATCATCGGACCCGGCGGATACTACCAACCCCCGCCGTACAATAATTACCCAGCCCCCCCGCCGCCGAACCCGATTGTCCCATATTTCCCATTTTATTACCACACTCCACCGCCTGGCTCCTCTGCTGCCGTCGGCCGTTTGACGAACTCGTTGGCTTGCTCTGTTCTTACTGTTGCTCTGTTTTCCTTTTTACTTGCTCTGTTTTAA

mRNA sequence

ATGGAAACCGCCATTTCTCTCAAAATTTTCATCTCTCTCGCGGCGGTTCTCCTCAGTTTTCCACCAGGATTTTCATCCCTCCCGGTGGCCGACCGGCGGATCTCCGCCGGCGCAAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCCTGTGGCCAGTATCTCTCTCCGCCCCCTCCTCCGCCGTCTCCTCCTCCGCCCGTCAACTGCCCGCCGCCGCCTTCTCCCCCCAGTTCCGGCACTTACTACTATTATTCTCCGCCCCCTCCAGCCCAACCCACCTACACTTACTCCTCCCCACCGCCGCCGCGTGGAATCATCGGACCCGGCGGATACTACCAACCCCCGCCGTACAATAATTACCCAGCCCCCCCGCCGCCGAACCCGATTGTCCCATATTTCCCATTTTATTACCACACTCCACCGCCTGGCTCCTCTGCTGCCGTCGGCCGTTTGACGAACTCGTTGGCTTGCTCTGTTCTTACTGTTGCTCTGTTTTCCTTTTTACTTGCTCTGTTTTAA

Coding sequence (CDS)

ATGGAAACCGCCATTTCTCTCAAAATTTTCATCTCTCTCGCGGCGGTTCTCCTCAGTTTTCCACCAGGATTTTCATCCCTCCCGGTGGCCGACCGGCGGATCTCCGCCGGCGCAAAGTACCAAATTGAATGCACAATGTGCTCTGCTTGTGACAATCCCTGTGGCCAGTATCTCTCTCCGCCCCCTCCTCCGCCGTCTCCTCCTCCGCCCGTCAACTGCCCGCCGCCGCCTTCTCCCCCCAGTTCCGGCACTTACTACTATTATTCTCCGCCCCCTCCAGCCCAACCCACCTACACTTACTCCTCCCCACCGCCGCCGCGTGGAATCATCGGACCCGGCGGATACTACCAACCCCCGCCGTACAATAATTACCCAGCCCCCCCGCCGCCGAACCCGATTGTCCCATATTTCCCATTTTATTACCACACTCCACCGCCTGGCTCCTCTGCTGCCGTCGGCCGTTTGACGAACTCGTTGGCTTGCTCTGTTCTTACTGTTGCTCTGTTTTCCTTTTTACTTGCTCTGTTTTAA

Protein sequence

METAISLKIFISLAAVLLSFPPGFSSLPVADRRISAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPPVNCPPPPSPPSSGTYYYYSPPPPAQPTYTYSSPPPPRGIIGPGGYYQPPPYNNYPAPPPPNPIVPYFPFYYHTPPPGSSAAVGRLTNSLACSVLTVALFSFLLALF

Homology

[Close]

BLAST of Cla97C05G087940 vs. NCBI nr
Match: XP_023526139.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-20
Identity = 53/59 (89.83%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  METAISLKIFISLAAVLLSFPPGFSSLPVADRRISAGAKYQIECTMCSACDNPCGQYLS 60
          METAISLK+FISL AVLLSFP GFSSLP ADRR  AGAKYQIECTMCSACDNPCGQYLS
Sbjct: 1  METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLS 59

[Close]

BLAST of Cla97C05G087940 vs. NCBI nr
Match: XP_022955565.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita moschata])

HSP 1 Score: 107.8 bits (268), Expect = 3.7e-20
Identity = 53/59 (89.83%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1  METAISLKIFISLAAVLLSFPPGFSSLPVADRRISAGAKYQIECTMCSACDNPCGQYLS 60
          METAISLK FISL AVLLSFP GFSSLP ADRR  AGAKYQIECTMCSACDNPCGQYLS
Sbjct: 1  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLS 59

[Close]

BLAST of Cla97C05G087940 vs. NCBI nr
Match: XP_022979944.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita maxima])

HSP 1 Score: 104.8 bits (260), Expect = 3.1e-19
Identity = 52/59 (88.14%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1  METAISLKIFISLAAVLLSFPPGFSSLPVADRRISAGAKYQIECTMCSACDNPCGQYLS 60
          METAISLK FISL AVLLSF  GFSSLP ADRR  AGAKYQIECTMCSACDNPCGQYLS
Sbjct: 1  METAISLKFFISLTAVLLSFTAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLS 59

[Close]

BLAST of Cla97C05G087940 vs. NCBI nr
Match: KGN57146.1 (Nutrient reservoir [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 5.2e-14
Identity = 159/176 (90.34%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   METAISLKIFISLAAVLLSFPPGFSSLPVADRRISAGAKYQIECTMCSACDNPCGQYLSX 60
           MET I L+  ISL A+LL FP G SSLPV   R SAGAKYQIECTMCSACDNPC QYLSX
Sbjct: 1   METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRLTNSLACSVLTVALFSFLLALF 177
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RLTNSL CSVLTVALFSFLLALF
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRLTNSLPCSVLTVALFSFLLALF 176

[Close]

BLAST of Cla97C05G087940 vs. NCBI nr
Match: XP_022137790.1 (leucine-rich repeat extensin-like protein 3 [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 4.9e-12
Identity = 42/62 (67.74%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 1  METAISLKIFISLAAVLLSFPPGFSSLPVADRRISAGA---KYQIECTMCSACDNPCGQY 60
          ME    L+  + LAAVLL FP    SLP  DRR SAGA   KYQIECTMCSACDNPCGQY
Sbjct: 1  MENGAPLRFLLPLAAVLLIFPATLWSLPATDRRTSAGAVSSKYQIECTMCSACDNPCGQY 60

[Close]

BLAST of Cla97C05G087940 vs. TrEMBL
Match: tr|A0A0A0LAN7|A0A0A0LAN7_CUCSA (Nutrient reservoir OS=Cucumis sativus OX=3659 GN=Csa_3G165630 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.4e-14
Identity = 159/176 (90.34%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   METAISLKIFISLAAVLLSFPPGFSSLPVADRRISAGAKYQIECTMCSACDNPCGQYLSX 60
           MET I L+  ISL A+LL FP G SSLPV   R SAGAKYQIECTMCSACDNPC QYLSX
Sbjct: 1   METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLSX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRLTNSLACSVLTVALFSFLLALF 177
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RLTNSL CSVLTVALFSFLLALF
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRLTNSLPCSVLTVALFSFLLALF 176

The following BLAST results are available for this feature:

BLAST of Cla97C05G087940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526139.1	2.2e-20	89.83	leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]	[more]
XP_022955565.1	3.7e-20	89.83	leucine-rich repeat extensin-like protein 6 [Cucurbita moschata]	[more]
XP_022979944.1	3.1e-19	88.14	leucine-rich repeat extensin-like protein 6 [Cucurbita maxima]	[more]
KGN57146.1	5.2e-14	90.34	Nutrient reservoir [Cucumis sativus]	[more]
XP_022137790.1	4.9e-12	67.74	leucine-rich repeat extensin-like protein 3 [Momordica charantia]	[more]

BLAST of Cla97C05G087940 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAN7\|A0A0A0LAN7_CUCSA	3.4e-14	90.34	Nutrient reservoir OS=Cucumis sativus OX=3659 GN=Csa_3G165630 PE=4 SV=1	[more]

BLAST of Cla97C05G087940 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G087940 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G087940.1	Cla97C05G087940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 115..132 score: 41.11 coord: 89..105 score: 49.41 coord: 58..79 score: 45.45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G087940	Cla021772	Watermelon (97103) v1	wmwmbB206
Cla97C05G087940	Csa3G165630	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G087940	CSPI03G14790	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G087940	Cucsa.252740	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G087940	CmoCh14G016340	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G087940	Lsi05G015720	Bottle gourd (USVL1VR-Ls)	lsiwmbB330
Cla97C05G087940	CsGy3G014910	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G087940	CsaV3_3G014990	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G087940	Bhi01G000757	Wax gourd	wgowmbB178

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G087940	Watermelon (97103) v2	wmbwmbB137
Cla97C05G087940	Silver-seed gourd	carwmbB0069
Cla97C05G087940	Silver-seed gourd	carwmbB0287
Cla97C05G087940	Silver-seed gourd	carwmbB0734
Cla97C05G087940	Silver-seed gourd	carwmbB1003
Cla97C05G087940	Cucumber (Gy14) v2	cgybwmbB442
Cla97C05G087940	Cucumber (Gy14) v1	cgywmbB066
Cla97C05G087940	Cucurbita maxima (Rimu)	cmawmbB001
Cla97C05G087940	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G087940	Cucurbita maxima (Rimu)	cmawmbB366
Cla97C05G087940	Cucurbita maxima (Rimu)	cmawmbB856
Cla97C05G087940	Cucurbita maxima (Rimu)	cmawmbB914
Cla97C05G087940	Cucurbita moschata (Rifu)	cmowmbB351
Cla97C05G087940	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G087940	Cucurbita moschata (Rifu)	cmowmbB887
Cla97C05G087940	Wild cucumber (PI 183967)	cpiwmbB490
Cla97C05G087940	Cucumber (Chinese Long) v3	cucwmbB483
Cla97C05G087940	Cucumber (Chinese Long) v2	cuwmbB465
Cla97C05G087940	Bottle gourd (USVL1VR-Ls)	lsiwmbB015
Cla97C05G087940	Melon (DHL92) v3.6.1	medwmbB114
Cla97C05G087940	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G087940	Melon (DHL92) v3.5.1	mewmbB123
Cla97C05G087940	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G087940	Watermelon (Charleston Gray)	wcgwmbB189
Cla97C05G087940	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G087940	Watermelon (Charleston Gray)	wcgwmbB269
Cla97C05G087940	Watermelon (97103) v1	wmwmbB136
Cla97C05G087940	Watermelon (97103) v1	wmwmbB402
Cla97C05G087940	Wax gourd	wgowmbB076