MELO3C006695.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C006695.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionBnaA01g17710D protein
Locationchr06 : 5129781 .. 5130896 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACACACCCCAACTCCACTTCACTTCACTTCACTAATCTCCTTTCTAATCCCCATTCCTCTCTCCAATGGAAGCTCCCATTTCTCTCCAAATTCTCATCTCTCTCACCCCCCTTCTCCTCCTTCTTCTCCCCGGAACTTCCTCTCTTCCGGTCTTCCACCCCCGATCCTCCGCCGGCGCTAAATACCAAATTGAATGCACAATGTGCTCTGCTTGCGACAATCCCTGTGGTCAGTATCTCTCTCCCCCGCCTCCTCCACCGTCCCCTCCTCCGCCTGTCAACTGTCCGCCCCCGCCTTCTCCTCCCACCTCCGGCACCTACGACTATTACTCTCCCCCTCCGCCGCCAGCTCAACCCACTTACACATACTCCTCCCCACCGCCGCCGCGTGGAATCATCGGACCCGGCGGATACTACCAACCTCCGCCGTATAATAATTACCCAGCTCCCCCGCCCCCGAATCCCATTGTCCCGTATTTCCCATTTTATTACCACACTCCACCGCCGGGCTCTTCCGCCGCCGTCGGCCGTTTGACGAATTCCTTGCCTTGCTCTGTTCTTACCGTTGCTCTGTTTTCCTTTTTACTTGTTTTGTTTTAAATGCAAATAACAGCAGACAGAAACTTTCAATAATGGCGGATTTTGCAGATCTGGGAAATTGATGGAGCTAAATGAGAAAGAGAAATTGAAGAAGAAAAAAAAAGAGGGGGGTTTCGATCTTCGAAGAAGACGATGAGAAATTCGCTTCAAGAATTTGCATTTTGTTGGGGTAAAGAAATTTTCTTTCTCATCCGGAAATTTCCTCAAAAATCTCTTTCTTTCTTACTTGACTCCATTGTTATTAGATTGATTTGTAATCTGCTGATTATATATAAACTGTATGTGTTTTTACTTGTATTCTTTACTCAATTCCTCAAAACAAGAAAAAAAAAACAAAAAAAAAACAAATCTGTATGTATCAATCTCTTGTTTATGTTTGTCATTTCAATTATATTTTTAAAGAACTAAATAACAGTCTTGGGACAAATTGATTCTTTTTCCTTTTTTATGTTCTTGATTTGTTCATCATTTTAGTTTGTAATTGTTGGAATTAATAAAAAAAAAAAGGAAAAGAATT

mRNA sequence

ACACACCCCAACTCCACTTCACTTCACTTCACTAATCTCCTTTCTAATCCCCATTCCTCTCTCCAATGGAAGCTCCCATTTCTCTCCAAATTCTCATCTCTCTCACCCCCCTTCTCCTCCTTCTTCTCCCCGGAACTTCCTCTCTTCCGGTCTTCCACCCCCGATCCTCCGCCGGCGCTAAATACCAAATTGAATGCACAATGTGCTCTGCTTGCGACAATCCCTGTGGTCAGTATCTCTCTCCCCCGCCTCCTCCACCGTCCCCTCCTCCGCCTGTCAACTGTCCGCCCCCGCCTTCTCCTCCCACCTCCGGCACCTACGACTATTACTCTCCCCCTCCGCCGCCAGCTCAACCCACTTACACATACTCCTCCCCACCGCCGCCGCGTGGAATCATCGGACCCGGCGGATACTACCAACCTCCGCCGTATAATAATTACCCAGCTCCCCCGCCCCCGAATCCCATTGTCCCGTATTTCCCATTTTATTACCACACTCCACCGCCGGGCTCTTCCGCCGCCGTCGGCCGTTTGACGAATTCCTTGCCTTGCTCTGTTCTTACCGTTGCTCTGTTTTCCTTTTTACTTGTTTTGTTTTAAATGCAAATAACAGCAGACAGAAACTTTCAATAATGGCGGATTTTGCAGATCTGGGAAATTGATGGAGCTAAATGAGAAAGAGAAATTGAAGAAGAAAAAAAAAGAGGGGGGTTTCGATCTTCGAAGAAGACGATGAGAAATTCGCTTCAAGAATTTGCATTTTGTTGGGGTAAAGAAATTTTCTTTCTCATCCGGAAATTTCCTCAAAAATCTCTTTCTTTCTTACTTGACTCCATTGTTATTAGATTGATTTGTAATCTGCTGATTATATATAAACTGTATGTGTTTTTACTTGTATTCTTTACTCAATTCCTCAAAACAAGAAAAAAAAAACAAAAAAAAAACAAATCTGTATGTATCAATCTCTTGTTTATGTTTGTCATTTCAATTATATTTTTAAAGAACTAAATAACAGTCTTGGGACAAATTGATTCTTTTTCCTTTTTTATGTTCTTGATTTGTTCATCATTTTAGTTTGTAATTGTTGGAATTAATAAAAAAAAAAAGGAAAAGAATT

Coding sequence (CDS)

ATGGAAGCTCCCATTTCTCTCCAAATTCTCATCTCTCTCACCCCCCTTCTCCTCCTTCTTCTCCCCGGAACTTCCTCTCTTCCGGTCTTCCACCCCCGATCCTCCGCCGGCGCTAAATACCAAATTGAATGCACAATGTGCTCTGCTTGCGACAATCCCTGTGGTCAGTATCTCTCTCCCCCGCCTCCTCCACCGTCCCCTCCTCCGCCTGTCAACTGTCCGCCCCCGCCTTCTCCTCCCACCTCCGGCACCTACGACTATTACTCTCCCCCTCCGCCGCCAGCTCAACCCACTTACACATACTCCTCCCCACCGCCGCCGCGTGGAATCATCGGACCCGGCGGATACTACCAACCTCCGCCGTATAATAATTACCCAGCTCCCCCGCCCCCGAATCCCATTGTCCCGTATTTCCCATTTTATTACCACACTCCACCGCCGGGCTCTTCCGCCGCCGTCGGCCGTTTGACGAATTCCTTGCCTTGCTCTGTTCTTACCGTTGCTCTGTTTTCCTTTTTACTTGTTTTGTTTTAA

Protein sequence

MEAPISLQILISLTPLLLLLLPGTSSLPVFHPRSSAGAKYQIECTMCSACDNPCGQYLSPPPPPPSPPPPVNCPPPPSPPTSGTYDYYSPPPPPAQPTYTYSSPPPPRGIIGPGGYYQPPPYNNYPAPPPPNPIVPYFPFYYHTPPPGSSAAVGRLTNSLPCSVLTVALFSFLLVLF
Homology
[Close]
BLAST of MELO3C006695.2 vs. NCBI nr
Match: KGN57146.1 (Nutrient reservoir [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 1.7e-17
Identity = 50/59 (84.75%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 1  MEAPISLQILISLTPLLLLLLPGTSSLPVFHPRSSAGAKYQIECTMCSACDNPCGQYLS 60
          ME PI LQ LISLT LLLL   G SSLPVFHPRSSAGAKYQIECTMCSACDNPC QYLS
Sbjct: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLS 59

[Close]
BLAST of MELO3C006695.2 vs. NCBI nr
Match: XP_022979944.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 1  MEAPISLQILISLTPLLLLLLPGTSSLPVFHPRSSAGAKYQIECTMCSACDNPCGQYLS 60
          ME  ISL+  ISLT +LL    G SSLP    R+ AGAKYQIECTMCSACDNPCGQYLS
Sbjct: 1  METAISLKFFISLTAVLLSFTAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLS 59

[Close]
BLAST of MELO3C006695.2 vs. NCBI nr
Match: XP_023526139.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 1  MEAPISLQILISLTPLLLLLLPGTSSLPVFHPRSSAGAKYQIECTMCSACDNPCGQYLS 60
          ME  ISL++ ISLT +LL    G SSLP    R+ AGAKYQIECTMCSACDNPCGQYLS
Sbjct: 1  METAISLKLFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLS 59

[Close]
BLAST of MELO3C006695.2 vs. NCBI nr
Match: XP_022955565.1 (leucine-rich repeat extensin-like protein 6 [Cucurbita moschata])

HSP 1 Score: 78.2 bits (191), Expect = 3.2e-11
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 1  MEAPISLQILISLTPLLLLLLPGTSSLPVFHPRSSAGAKYQIECTMCSACDNPCGQYLS 60
          ME  ISL+  ISLT +LL    G SSLP    R+ AGAKYQIECTMCSACDNPCGQYLS
Sbjct: 1  METAISLKFFISLTAVLLSFPAGFSSLPTADRRTLAGAKYQIECTMCSACDNPCGQYLS 59

[Close]
BLAST of MELO3C006695.2 vs. NCBI nr
Match: XP_022137790.1 (leucine-rich repeat extensin-like protein 3 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 36/62 (58.06%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 1  MEAPISLQILISLTPLLLLLLPGTSSLPVFHPRSSAGA---KYQIECTMCSACDNPCGQY 60
          ME    L+ L+ L  +LL+      SLP    R+SAGA   KYQIECTMCSACDNPCGQY
Sbjct: 1  MENGAPLRFLLPLAAVLLIFPATLWSLPATDRRTSAGAVSSKYQIECTMCSACDNPCGQY 60

[Close]
BLAST of MELO3C006695.2 vs. TrEMBL
Match: tr|A0A0A0LAN7|A0A0A0LAN7_CUCSA (Nutrient reservoir OS=Cucumis sativus OX=3659 GN=Csa_3G165630 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-17
Identity = 50/59 (84.75%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 1  MEAPISLQILISLTPLLLLLLPGTSSLPVFHPRSSAGAKYQIECTMCSACDNPCGQYLS 60
          ME PI LQ LISLT LLLL   G SSLPVFHPRSSAGAKYQIECTMCSACDNPC QYLS
Sbjct: 1  METPIPLQFLISLTALLLLFPSGISSLPVFHPRSSAGAKYQIECTMCSACDNPCAQYLS 59

The following BLAST results are available for this feature:
BLAST of MELO3C006695.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57146.11.7e-1784.75Nutrient reservoir [Cucumis sativus][more]
XP_022979944.11.9e-1169.49leucine-rich repeat extensin-like protein 6 [Cucurbita maxima][more]
XP_023526139.11.9e-1169.49leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo][more]
XP_022955565.13.2e-1169.49leucine-rich repeat extensin-like protein 6 [Cucurbita moschata][more]
XP_022137790.11.1e-0658.06leucine-rich repeat extensin-like protein 3 [Momordica charantia][more]
BLAST of MELO3C006695.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C006695.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C006695.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAN7|A0A0A0LAN7_CUCSA1.1e-1784.75Nutrient reservoir OS=Cucumis sativus OX=3659 GN=Csa_3G165630 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006695.2.1MELO3C006695.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 65..86
score: 34.55
coord: 90..106
score: 55.29
coord: 116..133
score: 41.11
coord: 53..65
score: 36.92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..113

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006695.2Csa3G165630Cucumber (Chinese Long) v2cumedB223
MELO3C006695.2CSPI03G14790Wild cucumber (PI 183967)cpimedB224
MELO3C006695.2Cucsa.252740Cucumber (Gy14) v1cgymedB432
MELO3C006695.2CmoCh14G016340Cucurbita moschata (Rifu)cmomedB260
MELO3C006695.2Cp4.1LG03g11530Cucurbita pepo (Zucchini)cpemedB693
MELO3C006695.2CsGy3G014910Cucumber (Gy14) v2cgybmedB201
MELO3C006695.2Cla021772Watermelon (97103) v1medwmB447
MELO3C006695.2Bhi01G000757Wax gourdmedwgoB530
MELO3C006695.2CsaV3_3G014990Cucumber (Chinese Long) v3cucmedB230
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006695.2Cucumber (Chinese Long) v3cucmedB079
MELO3C006695.2Cucumber (Chinese Long) v3cucmedB497
MELO3C006695.2Watermelon (97103) v2medwmbB423
MELO3C006695.2Watermelon (97103) v2medwmbB442
MELO3C006695.2Wax gourdmedwgoB517
MELO3C006695.2Cucumber (Gy14) v2cgybmedB432
MELO3C006695.2Cucumber (Gy14) v1cgymedB069
MELO3C006695.2Cucurbita maxima (Rimu)cmamedB001
MELO3C006695.2Cucurbita maxima (Rimu)cmamedB273
MELO3C006695.2Cucurbita maxima (Rimu)cmamedB398
MELO3C006695.2Cucurbita maxima (Rimu)cmamedB863
MELO3C006695.2Cucurbita maxima (Rimu)cmamedB950
MELO3C006695.2Cucurbita moschata (Rifu)cmomedB385
MELO3C006695.2Cucurbita moschata (Rifu)cmomedB857
MELO3C006695.2Cucurbita moschata (Rifu)cmomedB940
MELO3C006695.2Cucurbita pepo (Zucchini)cpemedB170
MELO3C006695.2Cucurbita pepo (Zucchini)cpemedB368
MELO3C006695.2Cucurbita pepo (Zucchini)cpemedB951
MELO3C006695.2Wild cucumber (PI 183967)cpimedB486
MELO3C006695.2Cucumber (Chinese Long) v2cumedB477
MELO3C006695.2Melon (DHL92) v3.6.1medmedB049
MELO3C006695.2Melon (DHL92) v3.6.1medmedB112
MELO3C006695.2Bottle gourd (USVL1VR-Ls)lsimedB032
MELO3C006695.2Bottle gourd (USVL1VR-Ls)lsimedB385
MELO3C006695.2Watermelon (Charleston Gray)medwcgB416
MELO3C006695.2Watermelon (Charleston Gray)medwcgB437
MELO3C006695.2Watermelon (97103) v1medwmB474
MELO3C006695.2Silver-seed gourdcarmedB0075
MELO3C006695.2Silver-seed gourdcarmedB0292
MELO3C006695.2Silver-seed gourdcarmedB0714
MELO3C006695.2Silver-seed gourdcarmedB0940