CsaV3_1G015250 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G015250
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 10837630 .. 10838848 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACAAAATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTACTTCTCTTTTTCTTCCTCGCTCATATCCTCTTTTCTTCTGGTTCTTTTCATTCTCCTTTTCATATTTTCATCTTTTTAGTACTTTTACCTCATTATATTATATTCATATTCATCTACCCTTTTTTCTCAATATAGATTATAACTATTGCTGCTGGAGAGTTGGGCGATGCCGTTATGTTTCCGGTAAGCTGTCGGTCTCTCGAGCTCTTCACATGAGCCGGAAGGTAAGATCTCAGGCTAGAGAAAGATGTTGAAATTTTCATATTAGGTATAGAATTAAGTTTATAGCTTCTTCTTATTGTAAAAATAAACTACGCTCTTTCGAGGAACTATTGTCAATCTTATTTTGTCGATCCTAAAATTGGAAATCTTTCTGTGAATATTTTCGAGTATATGTTTCTTTTCTCACTATTCTATATACTTTAGGGAATGCTTGTTCTACTTTATGAGAACTTGTCTTTTGTATTTTTGTATTATCAATACTTTTTATCTTCACACTAGTTTTTTCAATTTAAAATTATTATTTAATGTGTGGATCTCACAATATTCTTGTAAGATATCGACCTGACAAGTACTAATTGAAATAGTACCATGCAACATATATATATATGAAAAAAAATCACATTTATCCGTCCTCTCACTCATCACTCAAAAAATAAAATAAAAATATTTTAAAGAAATAGTAAGAAAAATTTATGTATGACAAATTATTATTAGTCCAGGAAACGAGTGGTGTGGATAGTGTCAGAAGATAGATTGTTTATTGTTTTTGAACGTTAGTTTCTTAGTTACAGATGCTTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGAAAAGGGCGGGAAGAGGTGGGGGACGGTGGCGGAGTGGGAGCAGTTGCGGAGGGTGCCGTCGGGACCTGACCCATTGCACCATAATGGCGGAAGCCCAAAGAAGCCTAGAACTCCTTGAACTAGAAATCCACGAGGAGGAAGATTTTGAAAGTAGGGGTTTTTGGCCGATCCCATCAACAAAACTAAAACCCACAGTTCTCCTTCTTTTTTTTTTTTTTTTGGGTTTTTTTTTTAAATTATTATTTAGTCTTTTAGTCTTTTTTCTTTTTTATGAATTTTGAATTTTTATATCATATGAATGCATGATTATGTTCCCTGTTCATATATGTTAAATGAAAATTG

mRNA sequence

CACAAAATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTACTTCTCTTTTTCTTCCTCGCTCATATCCTCTTTTCTTCTGATTATAACTATTGCTGCTGGAGAGTTGGGCGATGCCGTTATGTTTCCGGTAAGCTGTCGGTCTCTCGAGCTCTTCACATGAGCCGGAAGATGCTTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGAAAAGGGCGGGAAGAGGTGGGGGACGGTGGCGGAGTGGGAGCAGTTGCGGAGGGTGCCGTCGGGACCTGACCCATTGCACCATAATGGCGGAAGCCCAAAGAAGCCTAGAACTCCTTGA

Coding sequence (CDS)

CACAAAATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTACTTCTCTTTTTCTTCCTCGCTCATATCCTCTTTTCTTCTGATTATAACTATTGCTGCTGGAGAGTTGGGCGATGCCGTTATGTTTCCGGTAAGCTGTCGGTCTCTCGAGCTCTTCACATGAGCCGGAAGATGCTTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGAAAAGGGCGGGAAGAGGTGGGGGACGGTGGCGGAGTGGGAGCAGTTGCGGAGGGTGCCGTCGGGACCTGACCCATTGCACCATAATGGCGGAAGCCCAAAGAAGCCTAGAACTCCTTGA

Protein sequence

HKMASPSPSSFLSLLLLFFFLAHILFSSDYNYCCWRVGRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGEKGGKRWGTVAEWEQLRRVPSGPDPLHHNGGSPKKPRTP
Homology
[Close]
BLAST of CsaV3_1G015250 vs. NCBI nr
Match: XP_018829733.1 (PREDICTED: uncharacterized protein LOC108997815 [Juglans regia])

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-06
Identity = 37/80 (46.25%), Postives = 44/80 (55.00%), Query Frame = 0 

Query: 38  GRCRYVSGKLSVSRALHMSRKMLVEMKKEME--------EGEKGGKRWGTVAEWEQLRRV 97
           GR      K +VS     SRK+L  +K + E        +    G   G+   WE LRRV
Sbjct: 37  GRYGSFYAKAAVSSERENSRKLLAGLKYKKETVKVKGGLQASATGSNGGSFQGWE-LRRV 96

Query: 98  PSGPDPLHHNGGSPKKPRTP 110
           PSGPDPLHHNGG+P KPRTP
Sbjct: 97  PSGPDPLHHNGGNPTKPRTP 115

[Close]
BLAST of CsaV3_1G015250 vs. NCBI nr
Match: XP_019052239.1 (PREDICTED: uncharacterized protein LOC109114329 [Nelumbo nucifera])

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-05
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 0 

Query: 35  WRVGRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGE--KGGKRWGTVAEWEQLRRVPSG 94
           W  G  RY    + ++   + SRK+L   ++  +        +R G +  W+ LRRVPSG
Sbjct: 26  WGCG-SRYGCFHVKLASTENQSRKLLHGSEEVFKSFRPLDSRRRGGNLVSWD-LRRVPSG 85

Query: 95  PDPLHHNGGSPKKPRTP 110
           PDPLHHNGGSPKKP+TP
Sbjct: 86  PDPLHHNGGSPKKPQTP 100

[Close]
BLAST of CsaV3_1G015250 vs. NCBI nr
Match: PPS09121.1 (hypothetical protein GOBAR_AA11517 [Gossypium barbadense])

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-05
Identity = 35/71 (49.30%), Postives = 37/71 (52.11%), Query Frame = 0 

Query: 38  GRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGEKGGKRWGTVAEWEQLRRVPSGPDPLH 97
           G C  VSG          +RK+L    KE      G         WE LR VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFHEKPAQNRKILHADLKENNGSTTGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 98  HNGGSPKKPRT 109
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

[Close]
BLAST of CsaV3_1G015250 vs. NCBI nr
Match: PIN10646.1 (hypothetical protein CDL12_16767 [Handroanthus impetiginosus])

HSP 1 Score: 57.8 bits (138), Expect = 2.7e-05
Identity = 44/108 (40.74%), Postives = 56/108 (51.85%), Query Frame = 0 

Query: 3   MASPSPSSFLSLLLLFFFLAHILFSSDYNYCCWRVGRCRYVSGKLSVSRALHMSRKMLVE 62
           MA    SS L +LL+       LF  D+  C          S   +  + LH  RK+ +E
Sbjct: 1   MAKTKSSSALCMLLII-----TLFVQDFAEC----------SNSGASLKVLH--RKLFLE 60

Query: 63  MKK-EMEEGEKGGKRWGTVAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 110
           MKK  ++ G           +WE LRRVP+GPDPLHHNG +PKKPRTP
Sbjct: 61  MKKMALKNGAPSYGNKEMPEDWE-LRRVPAGPDPLHHNGQNPKKPRTP 90

[Close]
BLAST of CsaV3_1G015250 vs. NCBI nr
Match: XP_012485163.1 (PREDICTED: protein CLAVATA 3 [Gossypium raimondii] >KJB35441.1 hypothetical protein B456_006G114900 [Gossypium raimondii] >PPD76561.1 hypothetical protein GOBAR_DD26510 [Gossypium barbadense] >PPS09120.1 hypothetical protein GOBAR_AA11516 [Gossypium barbadense])

HSP 1 Score: 57.4 bits (137), Expect = 3.6e-05
Identity = 35/71 (49.30%), Postives = 37/71 (52.11%), Query Frame = 0 

Query: 38  GRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGEKGGKRWGTVAEWEQLRRVPSGPDPLH 97
           G C  VSG          +RK+L    KE      G         WE LR VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFHEKPAQNRKILHADLKENNGSITGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 98  HNGGSPKKPRT 109
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

[Close]
BLAST of CsaV3_1G015250 vs. TrEMBL
Match: tr|A0A2I4FDL8|A0A2I4FDL8_9ROSI (uncharacterized protein LOC108997815 OS=Juglans regia OX=51240 GN=LOC108997815 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-06
Identity = 37/80 (46.25%), Postives = 44/80 (55.00%), Query Frame = 0 

Query: 38  GRCRYVSGKLSVSRALHMSRKMLVEMKKEME--------EGEKGGKRWGTVAEWEQLRRV 97
           GR      K +VS     SRK+L  +K + E        +    G   G+   WE LRRV
Sbjct: 37  GRYGSFYAKAAVSSERENSRKLLAGLKYKKETVKVKGGLQASATGSNGGSFQGWE-LRRV 96

Query: 98  PSGPDPLHHNGGSPKKPRTP 110
           PSGPDPLHHNGG+P KPRTP
Sbjct: 97  PSGPDPLHHNGGNPTKPRTP 115

[Close]
BLAST of CsaV3_1G015250 vs. TrEMBL
Match: tr|A0A1U8Q0C1|A0A1U8Q0C1_NELNU (uncharacterized protein LOC109114329 OS=Nelumbo nucifera OX=4432 GN=LOC109114329 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 0 

Query: 35  WRVGRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGE--KGGKRWGTVAEWEQLRRVPSG 94
           W  G  RY    + ++   + SRK+L   ++  +        +R G +  W+ LRRVPSG
Sbjct: 26  WGCG-SRYGCFHVKLASTENQSRKLLHGSEEVFKSFRPLDSRRRGGNLVSWD-LRRVPSG 85

Query: 95  PDPLHHNGGSPKKPRTP 110
           PDPLHHNGGSPKKP+TP
Sbjct: 86  PDPLHHNGGSPKKPQTP 100

[Close]
BLAST of CsaV3_1G015250 vs. TrEMBL
Match: tr|A0A2P5Y0N4|A0A2P5Y0N4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11517 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 35/71 (49.30%), Postives = 37/71 (52.11%), Query Frame = 0 

Query: 38  GRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGEKGGKRWGTVAEWEQLRRVPSGPDPLH 97
           G C  VSG          +RK+L    KE      G         WE LR VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFHEKPAQNRKILHADLKENNGSTTGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 98  HNGGSPKKPRT 109
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

[Close]
BLAST of CsaV3_1G015250 vs. TrEMBL
Match: tr|A0A2G9GZD0|A0A2G9GZD0_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16767 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-05
Identity = 44/108 (40.74%), Postives = 56/108 (51.85%), Query Frame = 0 

Query: 3   MASPSPSSFLSLLLLFFFLAHILFSSDYNYCCWRVGRCRYVSGKLSVSRALHMSRKMLVE 62
           MA    SS L +LL+       LF  D+  C          S   +  + LH  RK+ +E
Sbjct: 1   MAKTKSSSALCMLLII-----TLFVQDFAEC----------SNSGASLKVLH--RKLFLE 60

Query: 63  MKK-EMEEGEKGGKRWGTVAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 110
           MKK  ++ G           +WE LRRVP+GPDPLHHNG +PKKPRTP
Sbjct: 61  MKKMALKNGAPSYGNKEMPEDWE-LRRVPAGPDPLHHNGQNPKKPRTP 90

[Close]
BLAST of CsaV3_1G015250 vs. TrEMBL
Match: tr|A0A2P5QPW6|A0A2P5QPW6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11516 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 35/71 (49.30%), Postives = 37/71 (52.11%), Query Frame = 0 

Query: 38  GRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGEKGGKRWGTVAEWEQLRRVPSGPDPLH 97
           G C  VSG          +RK+L    KE      G         WE LR VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFHEKPAQNRKILHADLKENNGSITGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 98  HNGGSPKKPRT 109
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

The following BLAST results are available for this feature:
BLAST of CsaV3_1G015250 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_018829733.11.9e-0646.25PREDICTED: uncharacterized protein LOC108997815 [Juglans regia][more]
XP_019052239.12.1e-0544.16PREDICTED: uncharacterized protein LOC109114329 [Nelumbo nucifera][more]
PPS09121.12.1e-0549.30hypothetical protein GOBAR_AA11517 [Gossypium barbadense][more]
PIN10646.12.7e-0540.74hypothetical protein CDL12_16767 [Handroanthus impetiginosus][more]
XP_012485163.13.6e-0549.30PREDICTED: protein CLAVATA 3 [Gossypium raimondii] >KJB35441.1 hypothetical prot... [more]
BLAST of CsaV3_1G015250 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G015250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G015250 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2I4FDL8|A0A2I4FDL8_9ROSI1.3e-0646.25uncharacterized protein LOC108997815 OS=Juglans regia OX=51240 GN=LOC108997815 P... [more]
tr|A0A1U8Q0C1|A0A1U8Q0C1_NELNU1.4e-0544.16uncharacterized protein LOC109114329 OS=Nelumbo nucifera OX=4432 GN=LOC109114329... [more]
tr|A0A2P5Y0N4|A0A2P5Y0N4_GOSBA1.4e-0549.30Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11517 PE=4 SV... [more]
tr|A0A2G9GZD0|A0A2G9GZD0_9LAMI1.8e-0540.74Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16767 P... [more]
tr|A0A2P5QPW6|A0A2P5QPW6_GOSBA2.4e-0549.30Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11516 PE=4 SV... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G015250.1CsaV3_1G015250.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..109
NoneNo IPR availablePANTHERPTHR36349:SF2PROTEIN CLAVATA 3coord: 3..109
NoneNo IPR availablePANTHERPTHR36349FAMILY NOT NAMEDcoord: 3..109

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G015250CsGy1G014910Cucumber (Gy14) v2cgybcucB002
CsaV3_1G015250Cla011032Watermelon (97103) v1cucwmB049
CsaV3_1G015250ClCG01G011530Watermelon (Charleston Gray)cucwcgB024
CsaV3_1G015250Lsi02G011840Bottle gourd (USVL1VR-Ls)cuclsiB033
CsaV3_1G015250MELO3C035640.2Melon (DHL92) v3.6.1cucmedB025
CsaV3_1G015250Cla97C01G011150Watermelon (97103) v2cucwmbB008
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G015250Cucumber (Chinese Long) v3cuccucB053
CsaV3_1G015250Cucumber (Gy14) v1cgycucB496
CsaV3_1G015250Cucurbita maxima (Rimu)cmacucB0253
CsaV3_1G015250Cucurbita maxima (Rimu)cmacucB0476
CsaV3_1G015250Cucurbita maxima (Rimu)cmacucB1004
CsaV3_1G015250Cucurbita moschata (Rifu)cmocucB0239
CsaV3_1G015250Cucurbita pepo (Zucchini)cpecucB0003
CsaV3_1G015250Wild cucumber (PI 183967)cpicucB001
CsaV3_1G015250Wild cucumber (PI 183967)cpicucB318
CsaV3_1G015250Bottle gourd (USVL1VR-Ls)cuclsiB017
CsaV3_1G015250Melon (DHL92) v3.5.1cucmeB016
CsaV3_1G015250Watermelon (Charleston Gray)cucwcgB029
CsaV3_1G015250Watermelon (97103) v1cucwmB064