CsGy1G014910 (gene) Cucumber (Gy14) v2

NameCsGy1G014910
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionCLAVATA3
LocationChr1 : 10815721 .. 10816766 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTACTTCTCTTTTTCTTCCTCGCTCATATCCTCTTTTCTTCTGGTTCTTTTCATTCTCCTTTTCATATTTTCATCTTTTTAGTACTTTTACCTCATTATATTATATTCATATTCATCTACCCTTTTTTCTCAATATAGATTATAACTATTGCTGCTGGAGAGTTGGGCGATGCCGTTATGTTTCCGGTAAGCTGTCGGTCTCTCGAGCTCTTCACATGAGCCGGAAGGTAAGATCTCAGGCTAGAGAAAGATGTTGAAATTTTCATATTAGGTATAGAATTAAGTTTATAGCTTCTTCTTATTGTAAAAATAAACTACGCTCTTTCGAGGAACTATTGTCAATCTTATTTTGTCGATCCTAAAATTGGAAATCTTTCTGTGAATATTTTCGAGTATATGTTTCTTTTCTCACTATTCTATATACTTTACGGAATGCTTGTTCTACTTTATGAGAACTTGTCTTTTGTATTTTTGTATTATCAATACTTTTTATCTTCACACTAGTTTTTTCAATTTAAAATTATTATTTAATGTGTGGATCTCACAATATTCTTATAAGATATCGACCTGACAAGTACTAATTGAAATAGTACCATGCAACATATATATATATGAAAAAAAAATCACATTTATCCGTCCTCTCACTCATCACTCAAAAAATAAAATAAAAATATTTTTAAGAAATAGTAAGAAAAATGTATGTATGACAAATTATTATTAGTCCAGGAAACGAGTGGTGTGGATAGTGTCAGAAGATAGATTGTTTATTGTTTTTGAACGTTAGTTTCTTAGTTACAGATGCTTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGAAAAGGGCGGGAAGAGGTGGGGGAGGGTGGCGGAGTGGGAGCAGTTGCGGAGGGTGCCGTCGGGACCTGACCCATTGCACCATAATGGCGGAAGCCCAAAGAAGCCTAGAACTCCTTGAACTAGAAATCCACGAGGAGGAAGATTTTGAAAGTAGGGGTTTTTGGCCGATCC

mRNA sequence

AAAATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTACTTCTCTTTTTCTTCCTCGCTCATATCCTCTTTTCTTCTGATTATAACTATTGCTGCTGGAGAGTTGGGCGATGCCGTTATGTTTCCGGTAAGCTGTCGGTCTCTCGAGCTCTTCACATGAGCCGGAAGATGCTTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGAAAAGGGCGGGAAGAGGTGGGGGAGGGTGGCGGAGTGGGAGCAGTTGCGGAGGGTGCCGTCGGGACCTGACCCATTGCACCATAATGGCGGAAGCCCAAAGAAGCCTAGAACTCCTTGAACTAGAAATCCACGAGGAGGAAGATTTTGAAAGTAGGGGTTTTTGGCCGATCC

Coding sequence (CDS)

ATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTACTTCTCTTTTTCTTCCTCGCTCATATCCTCTTTTCTTCTGATTATAACTATTGCTGCTGGAGAGTTGGGCGATGCCGTTATGTTTCCGGTAAGCTGTCGGTCTCTCGAGCTCTTCACATGAGCCGGAAGATGCTTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGAAAAGGGCGGGAAGAGGTGGGGGAGGGTGGCGGAGTGGGAGCAGTTGCGGAGGGTGCCGTCGGGACCTGACCCATTGCACCATAATGGCGGAAGCCCAAAGAAGCCTAGAACTCCTTGA

Protein sequence

MASPSPSSFLSLLLLFFFLAHILFSSDYNYCCWRVGRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGEKGGKRWGRVAEWEQLRRVPSGPDPLHHNGGSPKKPRTP
BLAST of CsGy1G014910 vs. NCBI nr
Match: XP_018829733.1 (PREDICTED: uncharacterized protein LOC108997815 [Juglans regia])

HSP 1 Score: 59.3 bits (142), Expect = 9.2e-06
Identity = 37/80 (46.25%), Postives = 43/80 (53.75%), Query Frame = 0

Query: 36  GRCRYVSGKLSVSRALHMSRKMLVEMKKEME--------EGEKGGKRWGRVAEWEQLRRV 95
           GR      K +VS     SRK+L  +K + E        +    G   G    WE LRRV
Sbjct: 37  GRYGSFYAKAAVSSERENSRKLLAGLKYKKETVKVKGGLQASATGSNGGSFQGWE-LRRV 96

Query: 96  PSGPDPLHHNGGSPKKPRTP 108
           PSGPDPLHHNGG+P KPRTP
Sbjct: 97  PSGPDPLHHNGGNPTKPRTP 115

BLAST of CsGy1G014910 vs. NCBI nr
Match: XP_019052239.1 (PREDICTED: uncharacterized protein LOC109114329 [Nelumbo nucifera])

HSP 1 Score: 56.6 bits (135), Expect = 6.0e-05
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 33  WRVGRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGE--KGGKRWGRVAEWEQLRRVPSG 92
           W  G  RY    + ++   + SRK+L   ++  +        +R G +  W+ LRRVPSG
Sbjct: 26  WGCG-SRYGCFHVKLASTENQSRKLLHGSEEVFKSFRPLDSRRRGGNLVSWD-LRRVPSG 85

Query: 93  PDPLHHNGGSPKKPRTP 108
           PDPLHHNGGSPKKP+TP
Sbjct: 86  PDPLHHNGGSPKKPQTP 100

BLAST of CsGy1G014910 vs. NCBI nr
Match: PPS09121.1 (hypothetical protein GOBAR_AA11517 [Gossypium barbadense])

HSP 1 Score: 56.6 bits (135), Expect = 6.0e-05
Identity = 35/71 (49.30%), Postives = 37/71 (52.11%), Query Frame = 0

Query: 36  GRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGEKGGKRWGRVAEWEQLRRVPSGPDPLH 95
           G C  VSG          +RK+L    KE      G         WE LR VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFHEKPAQNRKILHADLKENNGSTTGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 96  HNGGSPKKPRT 107
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

BLAST of CsGy1G014910 vs. NCBI nr
Match: PIN10646.1 (hypothetical protein CDL12_16767 [Handroanthus impetiginosus])

HSP 1 Score: 56.2 bits (134), Expect = 7.8e-05
Identity = 44/108 (40.74%), Postives = 56/108 (51.85%), Query Frame = 0

Query: 1   MASPSPSSFLSLLLLFFFLAHILFSSDYNYCCWRVGRCRYVSGKLSVSRALHMSRKMLVE 60
           MA    SS L +LL+       LF  D+  C          S   +  + LH  RK+ +E
Sbjct: 1   MAKTKSSSALCMLLII-----TLFVQDFAEC----------SNSGASLKVLH--RKLFLE 60

Query: 61  MKK-EMEEGEKGGKRWGRVAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 108
           MKK  ++ G           +WE LRRVP+GPDPLHHNG +PKKPRTP
Sbjct: 61  MKKMALKNGAPSYGNKEMPEDWE-LRRVPAGPDPLHHNGQNPKKPRTP 90

BLAST of CsGy1G014910 vs. NCBI nr
Match: XP_015873114.2 (protein CLAVATA 3 [Ziziphus jujuba])

HSP 1 Score: 56.2 bits (134), Expect = 7.8e-05
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 54  SRKMLVEMKKEMEEGEK------GGKRWGRVAEWE-QLRRVPSGPDPLHHNGGSPKKPRT 108
           +RK+L  +K++ EE  K      GG  +  +  W+ QLR+VPSGPDPLHHNG SPKKPRT
Sbjct: 29  NRKVLGGLKEKKEELHKSASSGNGGNNY--LMGWDYQLRKVPSGPDPLHHNGNSPKKPRT 87

BLAST of CsGy1G014910 vs. TrEMBL
Match: tr|A0A2I4FDL8|A0A2I4FDL8_9ROSI (uncharacterized protein LOC108997815 OS=Juglans regia OX=51240 GN=LOC108997815 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.1e-06
Identity = 37/80 (46.25%), Postives = 43/80 (53.75%), Query Frame = 0

Query: 36  GRCRYVSGKLSVSRALHMSRKMLVEMKKEME--------EGEKGGKRWGRVAEWEQLRRV 95
           GR      K +VS     SRK+L  +K + E        +    G   G    WE LRRV
Sbjct: 37  GRYGSFYAKAAVSSERENSRKLLAGLKYKKETVKVKGGLQASATGSNGGSFQGWE-LRRV 96

Query: 96  PSGPDPLHHNGGSPKKPRTP 108
           PSGPDPLHHNGG+P KPRTP
Sbjct: 97  PSGPDPLHHNGGNPTKPRTP 115

BLAST of CsGy1G014910 vs. TrEMBL
Match: tr|A0A1U8Q0C1|A0A1U8Q0C1_NELNU (uncharacterized protein LOC109114329 OS=Nelumbo nucifera OX=4432 GN=LOC109114329 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.9e-05
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 33  WRVGRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGE--KGGKRWGRVAEWEQLRRVPSG 92
           W  G  RY    + ++   + SRK+L   ++  +        +R G +  W+ LRRVPSG
Sbjct: 26  WGCG-SRYGCFHVKLASTENQSRKLLHGSEEVFKSFRPLDSRRRGGNLVSWD-LRRVPSG 85

Query: 93  PDPLHHNGGSPKKPRTP 108
           PDPLHHNGGSPKKP+TP
Sbjct: 86  PDPLHHNGGSPKKPQTP 100

BLAST of CsGy1G014910 vs. TrEMBL
Match: tr|A0A2P5Y0N4|A0A2P5Y0N4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11517 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.9e-05
Identity = 35/71 (49.30%), Postives = 37/71 (52.11%), Query Frame = 0

Query: 36  GRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGEKGGKRWGRVAEWEQLRRVPSGPDPLH 95
           G C  VSG          +RK+L    KE      G         WE LR VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFHEKPAQNRKILHADLKENNGSTTGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 96  HNGGSPKKPRT 107
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

BLAST of CsGy1G014910 vs. TrEMBL
Match: tr|A0A2G9GZD0|A0A2G9GZD0_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16767 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.1e-05
Identity = 44/108 (40.74%), Postives = 56/108 (51.85%), Query Frame = 0

Query: 1   MASPSPSSFLSLLLLFFFLAHILFSSDYNYCCWRVGRCRYVSGKLSVSRALHMSRKMLVE 60
           MA    SS L +LL+       LF  D+  C          S   +  + LH  RK+ +E
Sbjct: 1   MAKTKSSSALCMLLII-----TLFVQDFAEC----------SNSGASLKVLH--RKLFLE 60

Query: 61  MKK-EMEEGEKGGKRWGRVAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 108
           MKK  ++ G           +WE LRRVP+GPDPLHHNG +PKKPRTP
Sbjct: 61  MKKMALKNGAPSYGNKEMPEDWE-LRRVPAGPDPLHHNGQNPKKPRTP 90

BLAST of CsGy1G014910 vs. TrEMBL
Match: tr|A0A2P5QPW6|A0A2P5QPW6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11516 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.7e-05
Identity = 35/71 (49.30%), Postives = 37/71 (52.11%), Query Frame = 0

Query: 36  GRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGEKGGKRWGRVAEWEQLRRVPSGPDPLH 95
           G C  VSG          +RK+L    KE      G         WE LR VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFHEKPAQNRKILHADLKENNGSITGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 96  HNGGSPKKPRT 107
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_018829733.19.2e-0646.25PREDICTED: uncharacterized protein LOC108997815 [Juglans regia][more]
XP_019052239.16.0e-0544.16PREDICTED: uncharacterized protein LOC109114329 [Nelumbo nucifera][more]
PPS09121.16.0e-0549.30hypothetical protein GOBAR_AA11517 [Gossypium barbadense][more]
PIN10646.17.8e-0540.74hypothetical protein CDL12_16767 [Handroanthus impetiginosus][more]
XP_015873114.27.8e-0554.10protein CLAVATA 3 [Ziziphus jujuba][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A2I4FDL8|A0A2I4FDL8_9ROSI6.1e-0646.25uncharacterized protein LOC108997815 OS=Juglans regia OX=51240 GN=LOC108997815 P... [more]
tr|A0A1U8Q0C1|A0A1U8Q0C1_NELNU3.9e-0544.16uncharacterized protein LOC109114329 OS=Nelumbo nucifera OX=4432 GN=LOC109114329... [more]
tr|A0A2P5Y0N4|A0A2P5Y0N4_GOSBA3.9e-0549.30Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11517 PE=4 SV... [more]
tr|A0A2G9GZD0|A0A2G9GZD0_9LAMI5.1e-0540.74Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16767 P... [more]
tr|A0A2P5QPW6|A0A2P5QPW6_GOSBA6.7e-0549.30Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11516 PE=4 SV... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G014910.1CsGy1G014910.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..107
NoneNo IPR availablePANTHERPTHR36349FAMILY NOT NAMEDcoord: 1..107
NoneNo IPR availablePANTHERPTHR36349:SF2PROTEIN CLAVATA 3coord: 1..107