CsGy1G014910 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G014910
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	CLAVATA3
Location	Chr1 : 10815721 .. 10816766 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTACTTCTCTTTTTCTTCCTCGCTCATATCCTCTTTTCTTCTGGTTCTTTTCATTCTCCTTTTCATATTTTCATCTTTTTAGTACTTTTACCTCATTATATTATATTCATATTCATCTACCCTTTTTTCTCAATATAGATTATAACTATTGCTGCTGGAGAGTTGGGCGATGCCGTTATGTTTCCGGTAAGCTGTCGGTCTCTCGAGCTCTTCACATGAGCCGGAAGGTAAGATCTCAGGCTAGAGAAAGATGTTGAAATTTTCATATTAGGTATAGAATTAAGTTTATAGCTTCTTCTTATTGTAAAAATAAACTACGCTCTTTCGAGGAACTATTGTCAATCTTATTTTGTCGATCCTAAAATTGGAAATCTTTCTGTGAATATTTTCGAGTATATGTTTCTTTTCTCACTATTCTATATACTTTACGGAATGCTTGTTCTACTTTATGAGAACTTGTCTTTTGTATTTTTGTATTATCAATACTTTTTATCTTCACACTAGTTTTTTCAATTTAAAATTATTATTTAATGTGTGGATCTCACAATATTCTTATAAGATATCGACCTGACAAGTACTAATTGAAATAGTACCATGCAACATATATATATATGAAAAAAAAATCACATTTATCCGTCCTCTCACTCATCACTCAAAAAATAAAATAAAAATATTTTTAAGAAATAGTAAGAAAAATGTATGTATGACAAATTATTATTAGTCCAGGAAACGAGTGGTGTGGATAGTGTCAGAAGATAGATTGTTTATTGTTTTTGAACGTTAGTTTCTTAGTTACAGATGCTTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGAAAAGGGCGGGAAGAGGTGGGGGAGGGTGGCGGAGTGGGAGCAGTTGCGGAGGGTGCCGTCGGGACCTGACCCATTGCACCATAATGGCGGAAGCCCAAAGAAGCCTAGAACTCCTTGAACTAGAAATCCACGAGGAGGAAGATTTTGAAAGTAGGGGTTTTTGGCCGATCC

mRNA sequence

AAAATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTACTTCTCTTTTTCTTCCTCGCTCATATCCTCTTTTCTTCTGATTATAACTATTGCTGCTGGAGAGTTGGGCGATGCCGTTATGTTTCCGGTAAGCTGTCGGTCTCTCGAGCTCTTCACATGAGCCGGAAGATGCTTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGAAAAGGGCGGGAAGAGGTGGGGGAGGGTGGCGGAGTGGGAGCAGTTGCGGAGGGTGCCGTCGGGACCTGACCCATTGCACCATAATGGCGGAAGCCCAAAGAAGCCTAGAACTCCTTGAACTAGAAATCCACGAGGAGGAAGATTTTGAAAGTAGGGGTTTTTGGCCGATCC

Coding sequence (CDS)

ATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTACTTCTCTTTTTCTTCCTCGCTCATATCCTCTTTTCTTCTGATTATAACTATTGCTGCTGGAGAGTTGGGCGATGCCGTTATGTTTCCGGTAAGCTGTCGGTCTCTCGAGCTCTTCACATGAGCCGGAAGATGCTTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGAAAAGGGCGGGAAGAGGTGGGGGAGGGTGGCGGAGTGGGAGCAGTTGCGGAGGGTGCCGTCGGGACCTGACCCATTGCACCATAATGGCGGAAGCCCAAAGAAGCCTAGAACTCCTTGA

Protein sequence

MASPSPSSFLSLLLLFFFLAHILFSSDYNYCCWRVGRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGEKGGKRWGRVAEWEQLRRVPSGPDPLHHNGGSPKKPRTP

Homology

[Close]

BLAST of CsGy1G014910 vs. NCBI nr
Match: XP_018829733.1 (PREDICTED: uncharacterized protein LOC108997815 [Juglans regia])

HSP 1 Score: 59.3 bits (142), Expect = 9.2e-06
Identity = 37/80 (46.25%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 36  GRCRYVSGKLSVSRALHMSRKMLVEMKKEME--------EGEKGGKRWGRVAEWEQLRRV 95
           GR      K +VS     SRK+L  +K + E        +    G   G    WE LRRV
Sbjct: 37  GRYGSFYAKAAVSSERENSRKLLAGLKYKKETVKVKGGLQASATGSNGGSFQGWE-LRRV 96

Query: 96  PSGPDPLHHNGGSPKKPRTP 108
           PSGPDPLHHNGG+P KPRTP
Sbjct: 97  PSGPDPLHHNGGNPTKPRTP 115

[Close]

BLAST of CsGy1G014910 vs. NCBI nr
Match: XP_019052239.1 (PREDICTED: uncharacterized protein LOC109114329 [Nelumbo nucifera])

HSP 1 Score: 56.6 bits (135), Expect = 6.0e-05
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 33  WRVGRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGE--KGGKRWGRVAEWEQLRRVPSG 92
           W  G  RY    + ++   + SRK+L   ++  +        +R G +  W+ LRRVPSG
Sbjct: 26  WGCG-SRYGCFHVKLASTENQSRKLLHGSEEVFKSFRPLDSRRRGGNLVSWD-LRRVPSG 85

Query: 93  PDPLHHNGGSPKKPRTP 108
           PDPLHHNGGSPKKP+TP
Sbjct: 86  PDPLHHNGGSPKKPQTP 100

[Close]

BLAST of CsGy1G014910 vs. NCBI nr
Match: PPS09121.1 (hypothetical protein GOBAR_AA11517 [Gossypium barbadense])

HSP 1 Score: 56.6 bits (135), Expect = 6.0e-05
Identity = 35/71 (49.30%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 36  GRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGEKGGKRWGRVAEWEQLRRVPSGPDPLH 95
           G C  VSG          +RK+L    KE      G         WE LR VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFHEKPAQNRKILHADLKENNGSTTGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 96  HNGGSPKKPRT 107
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

[Close]

BLAST of CsGy1G014910 vs. NCBI nr
Match: PIN10646.1 (hypothetical protein CDL12_16767 [Handroanthus impetiginosus])

HSP 1 Score: 56.2 bits (134), Expect = 7.8e-05
Identity = 44/108 (40.74%), Postives = 56/108 (51.85%), Query Frame = 0


Query: 1   MASPSPSSFLSLLLLFFFLAHILFSSDYNYCCWRVGRCRYVSGKLSVSRALHMSRKMLVE 60
           MA    SS L +LL+       LF  D+  C          S   +  + LH  RK+ +E
Sbjct: 1   MAKTKSSSALCMLLII-----TLFVQDFAEC----------SNSGASLKVLH--RKLFLE 60

Query: 61  MKK-EMEEGEKGGKRWGRVAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 108
           MKK  ++ G           +WE LRRVP+GPDPLHHNG +PKKPRTP
Sbjct: 61  MKKMALKNGAPSYGNKEMPEDWE-LRRVPAGPDPLHHNGQNPKKPRTP 90

[Close]

BLAST of CsGy1G014910 vs. NCBI nr
Match: XP_015873114.2 (protein CLAVATA 3 [Ziziphus jujuba])

HSP 1 Score: 56.2 bits (134), Expect = 7.8e-05
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 54  SRKMLVEMKKEMEEGEK------GGKRWGRVAEWE-QLRRVPSGPDPLHHNGGSPKKPRT 108
           +RK+L  +K++ EE  K      GG  +  +  W+ QLR+VPSGPDPLHHNG SPKKPRT
Sbjct: 29  NRKVLGGLKEKKEELHKSASSGNGGNNY--LMGWDYQLRKVPSGPDPLHHNGNSPKKPRT 87

[Close]

BLAST of CsGy1G014910 vs. TrEMBL
Match: tr|A0A2I4FDL8|A0A2I4FDL8_9ROSI (uncharacterized protein LOC108997815 OS=Juglans regia OX=51240 GN=LOC108997815 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.1e-06
Identity = 37/80 (46.25%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 36  GRCRYVSGKLSVSRALHMSRKMLVEMKKEME--------EGEKGGKRWGRVAEWEQLRRV 95
           GR      K +VS     SRK+L  +K + E        +    G   G    WE LRRV
Sbjct: 37  GRYGSFYAKAAVSSERENSRKLLAGLKYKKETVKVKGGLQASATGSNGGSFQGWE-LRRV 96

Query: 96  PSGPDPLHHNGGSPKKPRTP 108
           PSGPDPLHHNGG+P KPRTP
Sbjct: 97  PSGPDPLHHNGGNPTKPRTP 115

[Close]

BLAST of CsGy1G014910 vs. TrEMBL
Match: tr|A0A1U8Q0C1|A0A1U8Q0C1_NELNU (uncharacterized protein LOC109114329 OS=Nelumbo nucifera OX=4432 GN=LOC109114329 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.9e-05
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 33  WRVGRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGE--KGGKRWGRVAEWEQLRRVPSG 92
           W  G  RY    + ++   + SRK+L   ++  +        +R G +  W+ LRRVPSG
Sbjct: 26  WGCG-SRYGCFHVKLASTENQSRKLLHGSEEVFKSFRPLDSRRRGGNLVSWD-LRRVPSG 85

Query: 93  PDPLHHNGGSPKKPRTP 108
           PDPLHHNGGSPKKP+TP
Sbjct: 86  PDPLHHNGGSPKKPQTP 100

[Close]

BLAST of CsGy1G014910 vs. TrEMBL
Match: tr|A0A2P5Y0N4|A0A2P5Y0N4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11517 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.9e-05
Identity = 35/71 (49.30%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 36  GRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGEKGGKRWGRVAEWEQLRRVPSGPDPLH 95
           G C  VSG          +RK+L    KE      G         WE LR VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFHEKPAQNRKILHADLKENNGSTTGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 96  HNGGSPKKPRT 107
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

[Close]

BLAST of CsGy1G014910 vs. TrEMBL
Match: tr|A0A2G9GZD0|A0A2G9GZD0_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16767 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.1e-05
Identity = 44/108 (40.74%), Postives = 56/108 (51.85%), Query Frame = 0


Query: 1   MASPSPSSFLSLLLLFFFLAHILFSSDYNYCCWRVGRCRYVSGKLSVSRALHMSRKMLVE 60
           MA    SS L +LL+       LF  D+  C          S   +  + LH  RK+ +E
Sbjct: 1   MAKTKSSSALCMLLII-----TLFVQDFAEC----------SNSGASLKVLH--RKLFLE 60

Query: 61  MKK-EMEEGEKGGKRWGRVAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 108
           MKK  ++ G           +WE LRRVP+GPDPLHHNG +PKKPRTP
Sbjct: 61  MKKMALKNGAPSYGNKEMPEDWE-LRRVPAGPDPLHHNGQNPKKPRTP 90

[Close]

BLAST of CsGy1G014910 vs. TrEMBL
Match: tr|A0A2P5QPW6|A0A2P5QPW6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11516 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.7e-05
Identity = 35/71 (49.30%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 36  GRCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGEKGGKRWGRVAEWEQLRRVPSGPDPLH 95
           G C  VSG          +RK+L    KE      G         WE LR VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFHEKPAQNRKILHADLKENNGSITGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 96  HNGGSPKKPRT 107
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

The following BLAST results are available for this feature:

BLAST of CsGy1G014910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_018829733.1	9.2e-06	46.25	PREDICTED: uncharacterized protein LOC108997815 [Juglans regia]	[more]
XP_019052239.1	6.0e-05	44.16	PREDICTED: uncharacterized protein LOC109114329 [Nelumbo nucifera]	[more]
PPS09121.1	6.0e-05	49.30	hypothetical protein GOBAR_AA11517 [Gossypium barbadense]	[more]
PIN10646.1	7.8e-05	40.74	hypothetical protein CDL12_16767 [Handroanthus impetiginosus]	[more]
XP_015873114.2	7.8e-05	54.10	protein CLAVATA 3 [Ziziphus jujuba]	[more]

BLAST of CsGy1G014910 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G014910 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G014910 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2I4FDL8\|A0A2I4FDL8_9ROSI	6.1e-06	46.25	uncharacterized protein LOC108997815 OS=Juglans regia OX=51240 GN=LOC108997815 P...	[more]
tr\|A0A1U8Q0C1\|A0A1U8Q0C1_NELNU	3.9e-05	44.16	uncharacterized protein LOC109114329 OS=Nelumbo nucifera OX=4432 GN=LOC109114329...	[more]
tr\|A0A2P5Y0N4\|A0A2P5Y0N4_GOSBA	3.9e-05	49.30	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11517 PE=4 SV...	[more]
tr\|A0A2G9GZD0\|A0A2G9GZD0_9LAMI	5.1e-05	40.74	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16767 P...	[more]
tr\|A0A2P5QPW6\|A0A2P5QPW6_GOSBA	6.7e-05	49.30	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11516 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G014910.1	CsGy1G014910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..107
None	No IPR available	PANTHER	PTHR36349	FAMILY NOT NAMED	coord: 1..107
None	No IPR available	PANTHER	PTHR36349:SF2	PROTEIN CLAVATA 3	coord: 1..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G014910	Cla011032	Watermelon (97103) v1	cgybwmB043
CsGy1G014910	ClCG01G011530	Watermelon (Charleston Gray)	cgybwcgB021
CsGy1G014910	Lsi02G011840	Bottle gourd (USVL1VR-Ls)	cgyblsiB029
CsGy1G014910	CsaV3_1G015250	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G014910	Cla97C01G011150	Watermelon (97103) v2	cgybwmbB009

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G014910	Cucurbita maxima (Rimu)	cgybcmaB078
CsGy1G014910	Cucurbita maxima (Rimu)	cgybcmaB095
CsGy1G014910	Cucurbita moschata (Rifu)	cgybcmoB072
CsGy1G014910	Cucurbita moschata (Rifu)	cgybcmoB096
CsGy1G014910	Cucurbita pepo (Zucchini)	cgybcpeB007
CsGy1G014910	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G014910	Bottle gourd (USVL1VR-Ls)	cgyblsiB014
CsGy1G014910	Melon (DHL92) v3.5.1	cgybmeB016
CsGy1G014910	Melon (DHL92) v3.5.1	cgybmeB028
CsGy1G014910	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G014910	Watermelon (97103) v1	cgybwmB060
CsGy1G014910	Watermelon (97103) v1	cgybwmB061
CsGy1G014910	Wild cucumber (PI 183967)	cgybcpiB001