ClCG01G011530 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G011530
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	CLAVATA3 LENGTH=96
Location	CG_Chr01 : 19058802 .. 19062721 (-)

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Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGACAGTAACAAAAAGAAATAATAATAGGTTAGGTGAGAGATGATGATACATATTGGCGTTTGGAGTGTCACCATCTTAATTGCTTGTGTCATATTAAGTCACTTAATAATCATAATTTCTCCACAAATGGCTGCATGAGCAATCATTGACACTTCTATATACATATATATTACCTTAAACCTCTCTACTTTTCTTCTCATAATTCCCTATAACTTACACACAACAATGGCATCACCATCTCCCTCTAAATTCATATATTCCTTTGCCTTCCTTTCCATTCTCCTTCTCATTCTCTTCCTCTCCAACAATCTCTTTTCTTCTGGTTCCCTTCATCATCTCTCCTTTTTATTATTCCCAACCATATTTCAGTTTCTCATACCTTACCTCATTACATTAATTCTTCTACCTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTCTTTCCTTATAGATTATTATTGCTGCTGGAGAGTTGGCCGATGTCGTTGCGTTTCCGCTGAGCTGCCCGTCTCTCGAGCGCTTCAGATCAGCCGGAAGGTACGTAAGATCTTACAGACATCTATTATAAAAGTTTGATGTTGCATACAAAGGAAGATTAATGTTCAAATACTATGTTCTTGTCCCTAAAACAAAGTACACTATGTCCTTTTGACTAAGTATTGTCAATCTTATTTTAACTATAAAATTGAAATCTTTCAATTTTCAAATAGATATGTTTCTTTGCTCCTGTTCTATTACTAAATTTGTTATGGAATGCTTATTCTATTTTATGAGAAATTTTTTGTGTTTTTGTATTACCTACCCCTAATCTTTACACTATTTCTTTTTTTAAAAAATAAAGAATTGAAGATATTGACATGACAAGTAGCATATCTATAAAAAAAGGATCTATTTTATATATGTAGAGCTGAAAGGATGGTGTTGCGAATATATATATTTGAATAGTGTTGCAAAATAACTATGTTTTTTTTTTAAGAAAAAAATCTATTATTCTTAAAGGATCTTTTAATGTGACAACTAATTATAGAAATAGTACCATGTAGTATGAAAATAATTTCTATTTTATCTATATGAAGAATTGTTTTTATTTACAGATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

mRNA sequence

ATGGGGACAATTATTATTGCTGCTGGAGAGTTGGCCGATGTCGTTGCGTTTCCGCTGAGCTGCCCGTCTCTCGAGCGCTTCAGATCAGCCGGAAGGTACATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

Coding sequence (CDS)

ATGGGGACAATTATTATTGCTGCTGGAGAGTTGGCCGATGTCGTTGCGTTTCCGCTGAGCTGCCCGTCTCTCGAGCGCTTCAGATCAGCCGGAAGGTACATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

Protein sequence

MGTIIIAAGELADVVAFPLSCPSLERFRSAGRYMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP

Homology

[Close]

BLAST of ClCG01G011530 vs. NCBI nr
Match: gi|659118088|ref|XP_008458944.1| (PREDICTED: protein CLAVATA 3 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 4.4e-15
Identity = 41/53 (77.36%), Postives = 43/53 (81.13%), Query Frame = 1


Query: 32 RYMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 85
          R M+ E KKEME+G  GGKR R   EWEQL RVPSGPDPLHHNGGSPKKPRTP
Sbjct: 3  RKMIVEMKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLHHNGGSPKKPRTP 55

[Close]

BLAST of ClCG01G011530 vs. NCBI nr
Match: gi|1009113381|ref|XP_015873114.1| (PREDICTED: protein CLAVATA 3 [Ziziphus jujuba])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1


Query: 35  LQERKKEMEKGADGGKR-RRPPVEWE-QLRRVPSGPDPLHHNGGSPKKPRTP 85
           L+E+K+E+ K A  G       + W+ QLR+VPSGPDPLHHNG SPKKPRTP
Sbjct: 55  LKEKKEELHKSASSGNGGNNYLMGWDYQLRKVPSGPDPLHHNGNSPKKPRTP 106

The following BLAST results are available for this feature:

BLAST of ClCG01G011530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118088\|ref\|XP_008458944.1\|	4.4e-15	77.36	PREDICTED: protein CLAVATA 3 [Cucumis melo]	[more]
gi\|1009113381\|ref\|XP_015873114.1\|	1.5e-07	59.62	PREDICTED: protein CLAVATA 3 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G011530.1	ClCG01G011530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36349	FAMILY NOT NAMED	coord: 34..84 score: 9.1
None	No IPR available	PANTHER	PTHR36349:SF2	PROTEIN CLAVATA 3	coord: 34..84 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G011530	Cla011032	Watermelon (97103) v1	wcgwmB155
ClCG01G011530	Cla97C01G011150	Watermelon (97103) v2	wcgwmbB089
ClCG01G011530	Lsi02G011840	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G011530	CsGy1G014910	Cucumber (Gy14) v2	cgybwcgB021
ClCG01G011530	CsaV3_1G015250	Cucumber (Chinese Long) v3	cucwcgB024

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G011530	Cucumber (Gy14) v1	cgywcgB552
ClCG01G011530	Cucurbita maxima (Rimu)	cmawcgB180
ClCG01G011530	Cucurbita maxima (Rimu)	cmawcgB341
ClCG01G011530	Cucurbita moschata (Rifu)	cmowcgB171
ClCG01G011530	Cucurbita moschata (Rifu)	cmowcgB342
ClCG01G011530	Wild cucumber (PI 183967)	cpiwcgB025
ClCG01G011530	Cucumber (Chinese Long) v2	cuwcgB022
ClCG01G011530	Cucurbita pepo (Zucchini)	cpewcgB006