Cla011032 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla011032
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 16838437 .. 16838592 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

mRNA sequence

ATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

Coding sequence (CDS)

ATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

Protein sequence

MLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP

Homology

[Close]

BLAST of Cla011032 vs. TrEMBL
Match: K7LVT1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G187800 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.8e-06
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1


Query: 11  KGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 52
           +G+   K    P+ W +LR+VPSGPDPLHHNG +PKKP+TP
Sbjct: 66  QGSSSNKYGEKPLNW-ELRKVPSGPDPLHHNGVNPKKPQTP 105

[Close]

BLAST of Cla011032 vs. TrEMBL
Match: A0A0B2QD91_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_035055 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.8e-06
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1


Query: 11  KGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 52
           +G+   K    P+ W +LR+VPSGPDPLHHNG +PKKP+TP
Sbjct: 66  QGSSSNKYGEKPLNW-ELRKVPSGPDPLHHNGVNPKKPQTP 105

[Close]

BLAST of Cla011032 vs. NCBI nr
Match: gi|659118088|ref|XP_008458944.1| (PREDICTED: protein CLAVATA 3 [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 5.9e-15
Identity = 40/51 (78.43%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 1  MLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 52
          M+ E KKEME+G  GGKR R   EWEQL RVPSGPDPLHHNGGSPKKPRTP
Sbjct: 5  MIVEMKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLHHNGGSPKKPRTP 55

[Close]

BLAST of Cla011032 vs. NCBI nr
Match: gi|1009113381|ref|XP_015873114.1| (PREDICTED: protein CLAVATA 3 [Ziziphus jujuba])

HSP 1 Score: 63.9 bits (154), Expect = 9.1e-08
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1


Query: 2   LQERKKEMEKGADGGKR-RRPPVEWE-QLRRVPSGPDPLHHNGGSPKKPRTP 52
           L+E+K+E+ K A  G       + W+ QLR+VPSGPDPLHHNG SPKKPRTP
Sbjct: 55  LKEKKEELHKSASSGNGGNNYLMGWDYQLRKVPSGPDPLHHNGNSPKKPRTP 106

[Close]

BLAST of Cla011032 vs. NCBI nr
Match: gi|747083208|ref|XP_011088962.1| (PREDICTED: protein CLAVATA 3 [Sesamum indicum])

HSP 1 Score: 57.4 bits (137), Expect = 8.6e-06
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1


Query: 2  LQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 52
          L+ ++  ++ GA        P +W +LRRVP+GPDPLHHNG  PKKPRTP
Sbjct: 44 LEMKQMGLKNGAPKLGNEEMPEDW-ELRRVPAGPDPLHHNGQDPKKPRTP 92

The following BLAST results are available for this feature:

BLAST of Cla011032 vs. TrEMBL


Match Name	E-value	Identity	Description
K7LVT1_SOYBN	7.8e-06	58.54	Uncharacterized protein OS=Glycine max GN=GLYMA_12G187800 PE=4 SV=1	[more]
A0A0B2QD91_GLYSO	7.8e-06	58.54	Uncharacterized protein OS=Glycine soja GN=glysoja_035055 PE=4 SV=1	[more]

BLAST of Cla011032 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118088\|ref\|XP_008458944.1\|	5.9e-15	78.43	PREDICTED: protein CLAVATA 3 [Cucumis melo]	[more]
gi\|1009113381\|ref\|XP_015873114.1\|	9.1e-08	59.62	PREDICTED: protein CLAVATA 3 [Ziziphus jujuba]	[more]
gi\|747083208\|ref\|XP_011088962.1\|	8.6e-06	52.00	PREDICTED: protein CLAVATA 3 [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla011032	Cla011032.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36349	FAMILY NOT NAMED	coord: 1..51 score: 9.1
None	No IPR available	PANTHER	PTHR36349:SF2	PROTEIN CLAVATA 3	coord: 1..51 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla011032	Cla97C01G011150	Watermelon (97103) v2	wmwmbB246
Cla011032	ClCG01G011530	Watermelon (Charleston Gray)	wcgwmB155
Cla011032	Lsi02G011840	Bottle gourd (USVL1VR-Ls)	lsiwmB205
Cla011032	CsGy1G014910	Cucumber (Gy14) v2	cgybwmB043
Cla011032	CsaV3_1G015250	Cucumber (Chinese Long) v3	cucwmB049

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla011032	Cucumber (Gy14) v1	cgywmB581
Cla011032	Cucurbita maxima (Rimu)	cmawmB202
Cla011032	Cucurbita maxima (Rimu)	cmawmB386
Cla011032	Cucurbita moschata (Rifu)	cmowmB189
Cla011032	Cucurbita moschata (Rifu)	cmowmB378
Cla011032	Cucumber (Chinese Long) v2	cuwmB042
Cla011032	Cucurbita pepo (Zucchini)	cpewmB014