Cla97C01G011150 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G011150
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	CLAVATA3 protein
Location	Cla97Chr01 : 18128339 .. 18129380 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCACCATCTCCCTCTAAATTCATATATTCCTTTGCCTTCCTTTCCATTCTCCTTCTCATTCTCTTCCTCTCCAACAATCTCTTTTCTTCTGGTTCCCTTCATCATCTCTCCTTTTTATTATTCCCAACCATATTTCAGTTTCTCATACCTTACCTCATTACATTAATTCTTCTACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCTTTCCTTATAGATTATTATTGCTGCTGGAGAGTTGGCCGATGTCGTTGCGTTTCCGCTGAGCTGCCCGTCTCTCGAGCGCTTCAGATCAGCCGGAAGGTACGTAAGATCTTACAGACATCTATTATAAAAGTTTGATGTTGCATACAAAGGAAGATTAATGTTCAAATACTATGTTCTTGTCCCTAAAACAAAGTACACTATGTCCTTTTGACTAAGTATTGTCAATCTTATTTTAACTATAAAATTGAAATCTTTCAATTTTCAAATAGATATGTTTCTTTGCTCCTGTTCTATTACTAAATTTGTTATGGAATGCTTATTCTATTTTATGAGAAATTTTTTGTGTTTTTGTATTACCTACCCCTAATCTTTACACTATTTCTTTTTTTAAAAAATAAAGAATTGAAGATATTGACATGACAAGTAGCATATCTATAAAAAAAGGATCTATTTTATATATGTAGAGCTGAAAGGATGGTGTTGCGAATATATATATTTGAATAGTGTTGCAAAATAACTATGTTTTTTTTTTAAGAAAAAAATCTATTATTCTTAAAGGATCTTTTAATGTGACAACTAATTATAGAAATAGTACCATGTAGTATGAAAATAATTTCTATTTTATCTATATGAAGAATTGTTTTTATTTACAGATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

mRNA sequence

ATGGCATCACCATCTCCCTCTAAATTCATATATTCCTTTGCCTTCCTTTCCATTCTCCTTCTCATTCTCTTCCTCTCCAACAATCTCTTTTCTTCTGATTATTATTGCTGCTGGAGAGTTGGCCGATGTCGTTGCGTTTCCGCTGAGCTGCCCGTCTCTCGAGCGCTTCAGATCAGCCGGAAGATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

Coding sequence (CDS)

ATGGCATCACCATCTCCCTCTAAATTCATATATTCCTTTGCCTTCCTTTCCATTCTCCTTCTCATTCTCTTCCTCTCCAACAATCTCTTTTCTTCTGATTATTATTGCTGCTGGAGAGTTGGCCGATGTCGTTGCGTTTCCGCTGAGCTGCCCGTCTCTCGAGCGCTTCAGATCAGCCGGAAGATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

Protein sequence

MASPSPSKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP

Homology

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BLAST of Cla97C01G011150 vs. NCBI nr
Match: XP_019448308.1 (PREDICTED: protein CLAVATA 3 [Lupinus angustifolius] >OIW09358.1 hypothetical protein TanjilG_01329 [Lupinus angustifolius])

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 43/109 (39.45%), Postives = 55/109 (50.46%), Query Frame = 0


Query: 7   SKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRC---RCVSAELPVSRALQISRKML 66
           SK I S   L +LL +L +     +SD   C  V  C     V  E+   + L   +   
Sbjct: 3   SKIILSSFILLVLLCLLLMRE---TSD---CGSVHECIGSNAVLKEIRNRKVLSALKNKK 62

Query: 67  QERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 113
              K  +E  +   K    P+ WE LR+VPSGPDPLHHNGG+PKKP TP
Sbjct: 63  NSLKVSLEGSSSSTKYGEKPLSWE-LRKVPSGPDPLHHNGGTPKKPETP 104

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BLAST of Cla97C01G011150 vs. NCBI nr
Match: XP_015873114.2 (protein CLAVATA 3 [Ziziphus jujuba])

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-05
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 45  CVSAELPVSRALQISRKM---LQERKKEMEKGADGGK-RRRPPVEWE-QLRRVPSGPDPL 104
           C++A+  V+   + +RK+   L+E+K+E+ K A  G       + W+ QLR+VPSGPDPL
Sbjct: 16  CLNADATVALETK-NRKVLGGLKEKKEELHKSASSGNGGNNYLMGWDYQLRKVPSGPDPL 75

Query: 105 HHNGGSPKKPRTP 113
           HHNG SPKKPRTP
Sbjct: 76  HHNGNSPKKPRTP 87

[Close]

BLAST of Cla97C01G011150 vs. NCBI nr
Match: XP_006594925.1 (protein CLAVATA 3 [Glycine max] >KHN36494.1 hypothetical protein glysoja_001225 [Glycine soja])

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-05
Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 7   SKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISRKMLQER 66
           SKFI++   L +LL +L + +       Y C+  G       ++P  + L + +      
Sbjct: 3   SKFIFTTVVLVMLLCLLLMRDPSGCGSAYECF--GANAAGLTDIPNRKVLPVLKDKKTSA 62

Query: 67  KKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 113
            K   +G+   K    P+ WE LR+VPSGPDPLHHNG +PK P+TP
Sbjct: 63  LKASLRGSSSNKYGEKPLNWE-LRKVPSGPDPLHHNGVNPKNPQTP 105

[Close]

BLAST of Cla97C01G011150 vs. NCBI nr
Match: PIN10646.1 (hypothetical protein CDL12_16767 [Handroanthus impetiginosus])

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-05
Identity = 41/93 (44.09%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 21  LILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISRKMLQERKK-EMEKGADGGKR 80
           L + L   LF  D+  C   G      A L V     + RK+  E KK  ++ GA     
Sbjct: 10  LCMLLIITLFVQDFAECSNSG------ASLKV-----LHRKLFLEMKKMALKNGAPSYGN 69

Query: 81  RRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 113
           +  P +WE LRRVP+GPDPLHHNG +PKKPRTP
Sbjct: 70  KEMPEDWE-LRRVPAGPDPLHHNGQNPKKPRTP 90

[Close]

BLAST of Cla97C01G011150 vs. NCBI nr
Match: KRH22640.1 (hypothetical protein GLYMA_13G313400 [Glycine max])

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 7   SKFIYSFAFLSILLLILFLSNN-------LFSSDYYCCWRVGRCRCVSA----ELPVSRA 66
           SKFI++   L +LL +L + +          + +Y+ C     C   +A    ++P  + 
Sbjct: 3   SKFIFTTVVLVMLLCLLLMRDPSGLSMFFFLAINYHSCGSAYECFGANAAGLTDIPNRKV 62

Query: 67  LQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 113
           L + +       K   +G+   K    P+ WE LR+VPSGPDPLHHNG +PK P+TP
Sbjct: 63  LPVLKDKKTSALKASLRGSSSNKYGEKPLNWE-LRKVPSGPDPLHHNGVNPKNPQTP 118

[Close]

BLAST of Cla97C01G011150 vs. TrEMBL
Match: tr|A0A2G9GZD0|A0A2G9GZD0_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16767 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 41/93 (44.09%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 21  LILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISRKMLQERKK-EMEKGADGGKR 80
           L + L   LF  D+  C   G      A L V     + RK+  E KK  ++ GA     
Sbjct: 10  LCMLLIITLFVQDFAECSNSG------ASLKV-----LHRKLFLEMKKMALKNGAPSYGN 69

Query: 81  RRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 113
           +  P +WE LRRVP+GPDPLHHNG +PKKPRTP
Sbjct: 70  KEMPEDWE-LRRVPAGPDPLHHNGQNPKKPRTP 90

[Close]

BLAST of Cla97C01G011150 vs. TrEMBL
Match: tr|A0A0R0GWQ7|A0A0R0GWQ7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G313400 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-05
Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 7   SKFIYSFAFLSILLLILFLSNN-------LFSSDYYCCWRVGRCRCVSA----ELPVSRA 66
           SKFI++   L +LL +L + +          + +Y+ C     C   +A    ++P  + 
Sbjct: 3   SKFIFTTVVLVMLLCLLLMRDPSGLSMFFFLAINYHSCGSAYECFGANAAGLTDIPNRKV 62

Query: 67  LQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 113
           L + +       K   +G+   K    P+ WE LR+VPSGPDPLHHNG +PK P+TP
Sbjct: 63  LPVLKDKKTSALKASLRGSSSNKYGEKPLNWE-LRKVPSGPDPLHHNGVNPKNPQTP 118

[Close]

BLAST of Cla97C01G011150 vs. TrEMBL
Match: tr|A0A2P5Y0N4|A0A2P5Y0N4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11517 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 45/111 (40.54%), Postives = 51/111 (45.95%), Query Frame = 0


Query: 1   MASPSPSKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISR 60
           MAS    K + + A +  LL +L L               G C CVS           +R
Sbjct: 1   MASACTVKLVTTRALVLALLYLLVLQ--------------GVCGCVSGHGCFHEKPAQNR 60

Query: 61  KMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRT 112
           K+L    KE      G       V WE LR VPSGPDPLHHNGGSPKKPRT
Sbjct: 61  KILHADLKENNGSTTGAGNMENFVGWE-LRAVPSGPDPLHHNGGSPKKPRT 96

[Close]

BLAST of Cla97C01G011150 vs. TrEMBL
Match: tr|A0A2P5QPW6|A0A2P5QPW6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11516 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-05
Identity = 45/111 (40.54%), Postives = 51/111 (45.95%), Query Frame = 0


Query: 1   MASPSPSKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISR 60
           MAS    K + + A +  LL +L L               G C CVS           +R
Sbjct: 1   MASACTLKLVTTRALVLALLYLLVLQ--------------GVCGCVSGHGCFHEKPAQNR 60

Query: 61  KMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRT 112
           K+L    KE      G       V WE LR VPSGPDPLHHNGGSPKKPRT
Sbjct: 61  KILHADLKENNGSITGAGNMENFVGWE-LRAVPSGPDPLHHNGGSPKKPRT 96

[Close]

BLAST of Cla97C01G011150 vs. TrEMBL
Match: tr|A0A0D2S155|A0A0D2S155_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G114900 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-05
Identity = 45/111 (40.54%), Postives = 51/111 (45.95%), Query Frame = 0


Query: 1   MASPSPSKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISR 60
           MAS    K + + A +  LL +L L               G C CVS           +R
Sbjct: 1   MASACTLKLVTTRALVLALLYLLVLQ--------------GVCGCVSGHGCFHEKPAQNR 60

Query: 61  KMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRT 112
           K+L    KE      G       V WE LR VPSGPDPLHHNGGSPKKPRT
Sbjct: 61  KILHADLKENNGSITGAGNMENFVGWE-LRAVPSGPDPLHHNGGSPKKPRT 96

The following BLAST results are available for this feature:

BLAST of Cla97C01G011150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_019448308.1	1.3e-05	39.45	PREDICTED: protein CLAVATA 3 [Lupinus angustifolius] >OIW09358.1 hypothetical pr...	[more]
XP_015873114.2	1.6e-05	49.32	protein CLAVATA 3 [Ziziphus jujuba]	[more]
XP_006594925.1	2.1e-05	35.85	protein CLAVATA 3 [Glycine max] >KHN36494.1 hypothetical protein glysoja_001225 ...	[more]
PIN10646.1	2.1e-05	44.09	hypothetical protein CDL12_16767 [Handroanthus impetiginosus]	[more]
KRH22640.1	2.8e-05	33.33	hypothetical protein GLYMA_13G313400 [Glycine max]	[more]

BLAST of Cla97C01G011150 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2G9GZD0\|A0A2G9GZD0_9LAMI	1.4e-05	44.09	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16767 P...	[more]
tr\|A0A0R0GWQ7\|A0A0R0GWQ7_SOYBN	1.9e-05	33.33	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G313400 PE=4 SV=1	[more]
tr\|A0A2P5Y0N4\|A0A2P5Y0N4_GOSBA	3.2e-05	40.54	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11517 PE=4 SV...	[more]
tr\|A0A2P5QPW6\|A0A2P5QPW6_GOSBA	4.1e-05	40.54	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11516 PE=4 SV...	[more]
tr\|A0A0D2S155\|A0A0D2S155_GOSRA	4.1e-05	40.54	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G114900 PE=4 ...	[more]

BLAST of Cla97C01G011150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G011150 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G011150.1	Cla97C01G011150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..87
None	No IPR available	PANTHER	PTHR36349	FAMILY NOT NAMED	coord: 14..112
None	No IPR available	PANTHER	PTHR36349:SF2	PROTEIN CLAVATA 3	coord: 14..112

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G011150	Cla011032	Watermelon (97103) v1	wmwmbB246
Cla97C01G011150	ClCG01G011530	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G011150	Lsi02G011840	Bottle gourd (USVL1VR-Ls)	lsiwmbB153
Cla97C01G011150	CsGy1G014910	Cucumber (Gy14) v2	cgybwmbB009
Cla97C01G011150	CsaV3_1G015250	Cucumber (Chinese Long) v3	cucwmbB008

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G011150	Silver-seed gourd	carwmbB0000
Cla97C01G011150	Cucumber (Gy14) v1	cgywmbB557
Cla97C01G011150	Cucumber (Gy14) v1	cgywmbB558
Cla97C01G011150	Cucurbita maxima (Rimu)	cmawmbB208
Cla97C01G011150	Cucurbita maxima (Rimu)	cmawmbB394
Cla97C01G011150	Cucurbita moschata (Rifu)	cmowmbB192
Cla97C01G011150	Cucurbita moschata (Rifu)	cmowmbB380
Cla97C01G011150	Wild cucumber (PI 183967)	cpiwmbB009
Cla97C01G011150	Wild cucumber (PI 183967)	cpiwmbB438
Cla97C01G011150	Cucumber (Chinese Long) v2	cuwmbB009