Cla97C01G011150.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G011150.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	CLAVATA3 protein
Location	Cla97Chr01 : 18128339 .. 18129380 (-)
Sequence length	339

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCACCATCTCCCTCTAAATTCATATATTCCTTTGCCTTCCTTTCCATTCTCCTTCTCATTCTCTTCCTCTCCAACAATCTCTTTTCTTCTGGTTCCCTTCATCATCTCTCCTTTTTATTATTCCCAACCATATTTCAGTTTCTCATACCTTACCTCATTACATTAATTCTTCTACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCTTTCCTTATAGATTATTATTGCTGCTGGAGAGTTGGCCGATGTCGTTGCGTTTCCGCTGAGCTGCCCGTCTCTCGAGCGCTTCAGATCAGCCGGAAGGTACGTAAGATCTTACAGACATCTATTATAAAAGTTTGATGTTGCATACAAAGGAAGATTAATGTTCAAATACTATGTTCTTGTCCCTAAAACAAAGTACACTATGTCCTTTTGACTAAGTATTGTCAATCTTATTTTAACTATAAAATTGAAATCTTTCAATTTTCAAATAGATATGTTTCTTTGCTCCTGTTCTATTACTAAATTTGTTATGGAATGCTTATTCTATTTTATGAGAAATTTTTTGTGTTTTTGTATTACCTACCCCTAATCTTTACACTATTTCTTTTTTTAAAAAATAAAGAATTGAAGATATTGACATGACAAGTAGCATATCTATAAAAAAAGGATCTATTTTATATATGTAGAGCTGAAAGGATGGTGTTGCGAATATATATATTTGAATAGTGTTGCAAAATAACTATGTTTTTTTTTTAAGAAAAAAATCTATTATTCTTAAAGGATCTTTTAATGTGACAACTAATTATAGAAATAGTACCATGTAGTATGAAAATAATTTCTATTTTATCTATATGAAGAATTGTTTTTATTTACAGATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

mRNA sequence

ATGGCATCACCATCTCCCTCTAAATTCATATATTCCTTTGCCTTCCTTTCCATTCTCCTTCTCATTCTCTTCCTCTCCAACAATCTCTTTTCTTCTGATTATTATTGCTGCTGGAGAGTTGGCCGATGTCGTTGCGTTTCCGCTGAGCTGCCCGTCTCTCGAGCGCTTCAGATCAGCCGGAAGATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

Coding sequence (CDS)

ATGGCATCACCATCTCCCTCTAAATTCATATATTCCTTTGCCTTCCTTTCCATTCTCCTTCTCATTCTCTTCCTCTCCAACAATCTCTTTTCTTCTGATTATTATTGCTGCTGGAGAGTTGGCCGATGTCGTTGCGTTTCCGCTGAGCTGCCCGTCTCTCGAGCGCTTCAGATCAGCCGGAAGATGCTTCAAGAGAGGAAGAAGGAGATGGAGAAGGGAGCTGACGGCGGCAAGAGGCGGCGGCCGCCGGTGGAGTGGGAGCAGTTGCGGAGGGTTCCGTCGGGACCTGACCCATTACACCATAATGGTGGAAGTCCGAAAAAGCCTAGAACTCCTTGA

Protein sequence

MASPSPSKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP

Homology

[Close]

BLAST of Cla97C01G011150.1 vs. NCBI nr
Match: XP_019448308.1 (PREDICTED: protein CLAVATA 3 [Lupinus angustifolius] >OIW09358.1 hypothetical protein TanjilG_01329 [Lupinus angustifolius])

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 43/109 (39.45%), Postives = 55/109 (50.46%), Query Frame = 0


Query: 7   SKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRC---RCVSAELPVSRALQISRKML 66
           SK I S   L +LL +L +     +SD   C  V  C     V  E+   + L   +   
Sbjct: 3   SKIILSSFILLVLLCLLLMRE---TSD---CGSVHECIGSNAVLKEIRNRKVLSALKNKK 62

Query: 67  QERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 113
              K  +E  +   K    P+ WE LR+VPSGPDPLHHNGG+PKKP TP
Sbjct: 63  NSLKVSLEGSSSSTKYGEKPLSWE-LRKVPSGPDPLHHNGGTPKKPETP 104

[Close]

BLAST of Cla97C01G011150.1 vs. NCBI nr
Match: XP_015873114.2 (protein CLAVATA 3 [Ziziphus jujuba])

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-05
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 45  CVSAELPVSRALQISRKM---LQERKKEMEKGADGGK-RRRPPVEWE-QLRRVPSGPDPL 104
           C++A+  V+   + +RK+   L+E+K+E+ K A  G       + W+ QLR+VPSGPDPL
Sbjct: 16  CLNADATVALETK-NRKVLGGLKEKKEELHKSASSGNGGNNYLMGWDYQLRKVPSGPDPL 75

Query: 105 HHNGGSPKKPRTP 113
           HHNG SPKKPRTP
Sbjct: 76  HHNGNSPKKPRTP 87

[Close]

BLAST of Cla97C01G011150.1 vs. NCBI nr
Match: XP_006594925.1 (protein CLAVATA 3 [Glycine max] >KHN36494.1 hypothetical protein glysoja_001225 [Glycine soja])

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-05
Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 7   SKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISRKMLQER 66
           SKFI++   L +LL +L + +       Y C+  G       ++P  + L + +      
Sbjct: 3   SKFIFTTVVLVMLLCLLLMRDPSGCGSAYECF--GANAAGLTDIPNRKVLPVLKDKKTSA 62

Query: 67  KKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 113
            K   +G+   K    P+ WE LR+VPSGPDPLHHNG +PK P+TP
Sbjct: 63  LKASLRGSSSNKYGEKPLNWE-LRKVPSGPDPLHHNGVNPKNPQTP 105

[Close]

BLAST of Cla97C01G011150.1 vs. NCBI nr
Match: PIN10646.1 (hypothetical protein CDL12_16767 [Handroanthus impetiginosus])

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-05
Identity = 41/93 (44.09%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 21  LILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISRKMLQERKK-EMEKGADGGKR 80
           L + L   LF  D+  C   G      A L V     + RK+  E KK  ++ GA     
Sbjct: 10  LCMLLIITLFVQDFAECSNSG------ASLKV-----LHRKLFLEMKKMALKNGAPSYGN 69

Query: 81  RRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 113
           +  P +WE LRRVP+GPDPLHHNG +PKKPRTP
Sbjct: 70  KEMPEDWE-LRRVPAGPDPLHHNGQNPKKPRTP 90

[Close]

BLAST of Cla97C01G011150.1 vs. NCBI nr
Match: KRH22640.1 (hypothetical protein GLYMA_13G313400 [Glycine max])

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 7   SKFIYSFAFLSILLLILFLSNN-------LFSSDYYCCWRVGRCRCVSA----ELPVSRA 66
           SKFI++   L +LL +L + +          + +Y+ C     C   +A    ++P  + 
Sbjct: 3   SKFIFTTVVLVMLLCLLLMRDPSGLSMFFFLAINYHSCGSAYECFGANAAGLTDIPNRKV 62

Query: 67  LQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 113
           L + +       K   +G+   K    P+ WE LR+VPSGPDPLHHNG +PK P+TP
Sbjct: 63  LPVLKDKKTSALKASLRGSSSNKYGEKPLNWE-LRKVPSGPDPLHHNGVNPKNPQTP 118

[Close]

BLAST of Cla97C01G011150.1 vs. TrEMBL
Match: tr|A0A2G9GZD0|A0A2G9GZD0_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16767 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 41/93 (44.09%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 21  LILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISRKMLQERKK-EMEKGADGGKR 80
           L + L   LF  D+  C   G      A L V     + RK+  E KK  ++ GA     
Sbjct: 10  LCMLLIITLFVQDFAECSNSG------ASLKV-----LHRKLFLEMKKMALKNGAPSYGN 69

Query: 81  RRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 113
           +  P +WE LRRVP+GPDPLHHNG +PKKPRTP
Sbjct: 70  KEMPEDWE-LRRVPAGPDPLHHNGQNPKKPRTP 90

[Close]

BLAST of Cla97C01G011150.1 vs. TrEMBL
Match: tr|A0A0R0GWQ7|A0A0R0GWQ7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G313400 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-05
Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 7   SKFIYSFAFLSILLLILFLSNN-------LFSSDYYCCWRVGRCRCVSA----ELPVSRA 66
           SKFI++   L +LL +L + +          + +Y+ C     C   +A    ++P  + 
Sbjct: 3   SKFIFTTVVLVMLLCLLLMRDPSGLSMFFFLAINYHSCGSAYECFGANAAGLTDIPNRKV 62

Query: 67  LQISRKMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRTP 113
           L + +       K   +G+   K    P+ WE LR+VPSGPDPLHHNG +PK P+TP
Sbjct: 63  LPVLKDKKTSALKASLRGSSSNKYGEKPLNWE-LRKVPSGPDPLHHNGVNPKNPQTP 118

[Close]

BLAST of Cla97C01G011150.1 vs. TrEMBL
Match: tr|A0A2P5Y0N4|A0A2P5Y0N4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11517 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 45/111 (40.54%), Postives = 51/111 (45.95%), Query Frame = 0


Query: 1   MASPSPSKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISR 60
           MAS    K + + A +  LL +L L               G C CVS           +R
Sbjct: 1   MASACTVKLVTTRALVLALLYLLVLQ--------------GVCGCVSGHGCFHEKPAQNR 60

Query: 61  KMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRT 112
           K+L    KE      G       V WE LR VPSGPDPLHHNGGSPKKPRT
Sbjct: 61  KILHADLKENNGSTTGAGNMENFVGWE-LRAVPSGPDPLHHNGGSPKKPRT 96

[Close]

BLAST of Cla97C01G011150.1 vs. TrEMBL
Match: tr|A0A2P5QPW6|A0A2P5QPW6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11516 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-05
Identity = 45/111 (40.54%), Postives = 51/111 (45.95%), Query Frame = 0


Query: 1   MASPSPSKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISR 60
           MAS    K + + A +  LL +L L               G C CVS           +R
Sbjct: 1   MASACTLKLVTTRALVLALLYLLVLQ--------------GVCGCVSGHGCFHEKPAQNR 60

Query: 61  KMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRT 112
           K+L    KE      G       V WE LR VPSGPDPLHHNGGSPKKPRT
Sbjct: 61  KILHADLKENNGSITGAGNMENFVGWE-LRAVPSGPDPLHHNGGSPKKPRT 96

[Close]

BLAST of Cla97C01G011150.1 vs. TrEMBL
Match: tr|A0A0D2S155|A0A0D2S155_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G114900 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-05
Identity = 45/111 (40.54%), Postives = 51/111 (45.95%), Query Frame = 0


Query: 1   MASPSPSKFIYSFAFLSILLLILFLSNNLFSSDYYCCWRVGRCRCVSAELPVSRALQISR 60
           MAS    K + + A +  LL +L L               G C CVS           +R
Sbjct: 1   MASACTLKLVTTRALVLALLYLLVLQ--------------GVCGCVSGHGCFHEKPAQNR 60

Query: 61  KMLQERKKEMEKGADGGKRRRPPVEWEQLRRVPSGPDPLHHNGGSPKKPRT 112
           K+L    KE      G       V WE LR VPSGPDPLHHNGGSPKKPRT
Sbjct: 61  KILHADLKENNGSITGAGNMENFVGWE-LRAVPSGPDPLHHNGGSPKKPRT 96

The following BLAST results are available for this feature:

BLAST of Cla97C01G011150.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_019448308.1	1.3e-05	39.45	PREDICTED: protein CLAVATA 3 [Lupinus angustifolius] >OIW09358.1 hypothetical pr...	[more]
XP_015873114.2	1.6e-05	49.32	protein CLAVATA 3 [Ziziphus jujuba]	[more]
XP_006594925.1	2.1e-05	35.85	protein CLAVATA 3 [Glycine max] >KHN36494.1 hypothetical protein glysoja_001225 ...	[more]
PIN10646.1	2.1e-05	44.09	hypothetical protein CDL12_16767 [Handroanthus impetiginosus]	[more]
KRH22640.1	2.8e-05	33.33	hypothetical protein GLYMA_13G313400 [Glycine max]	[more]

BLAST of Cla97C01G011150.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2G9GZD0\|A0A2G9GZD0_9LAMI	1.4e-05	44.09	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16767 P...	[more]
tr\|A0A0R0GWQ7\|A0A0R0GWQ7_SOYBN	1.9e-05	33.33	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G313400 PE=4 SV=1	[more]
tr\|A0A2P5Y0N4\|A0A2P5Y0N4_GOSBA	3.2e-05	40.54	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11517 PE=4 SV...	[more]
tr\|A0A2P5QPW6\|A0A2P5QPW6_GOSBA	4.1e-05	40.54	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11516 PE=4 SV...	[more]
tr\|A0A0D2S155\|A0A0D2S155_GOSRA	4.1e-05	40.54	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G114900 PE=4 ...	[more]

BLAST of Cla97C01G011150.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G011150.1 vs. TAIR10


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C01G011150	Cla97C01G011150	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C01G011150.1	Cla97C01G011150.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G011150.1.CDS.3	Cla97C01G011150.1.CDS.3	CDS
Cla97C01G011150.1.CDS.2	Cla97C01G011150.1.CDS.2	CDS
Cla97C01G011150.1.CDS.1	Cla97C01G011150.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G011150.1.exon.3	Cla97C01G011150.1.exon.3	exon
Cla97C01G011150.1.exon.2	Cla97C01G011150.1.exon.2	exon
Cla97C01G011150.1.exon.1	Cla97C01G011150.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..87
None	No IPR available	PANTHER	PTHR36349	FAMILY NOT NAMED	coord: 14..112
None	No IPR available	PANTHER	PTHR36349:SF2	PROTEIN CLAVATA 3	coord: 14..112