MELO3C035640.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035640.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Protein CLAVATA 3
Location	chr12 : 15485843 .. 15487144 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTCTTTCTCTTTTTCTTCCTCGCTCATAGTCTCTTTTCTTCTGGTTCTCTTCATTCTCCTTTTCATATTTTCAATTTTTTTTCATACTTTACCTCATTATATTATATTCATATTCATCTACCGTTTTTTCTCAATATAGATTATAACTATTGCTGCTGGAGAGTTGGCCAATGTCGTTGCGTTTCCGGTAAGCTGTCGGTCTCTCGAGCGCTTCACATGAGCCGGAAGGTAAGATCTTAGGCTAGCTAGAGAAGGATGATGAATTTTTCATAATGGGTATAGAATTAAGTTTATAGCTTCTTCTATTGTAAATTAAATACACTACGTTGATCTTTCGAGGAAGTATTGTCAATCTTATTCTATCGACCCTAAAATTGGAAATCTGTGAATTTTCAAATGAGCATATGTTTCTTTTCTCACTGTTCTATTATACTAAATTTGTTAGGGAATGTTTGTTCTATTTTATGAGAATTTGTTGTTTGTATTTTTGTGTTATCAATACTTTTATCATCACACTAGTTTTTTCTATTTAAAATTATTATTTAATGTGTGGATCACACAATATTCTTATAAGATATTTACCTGACAAGTAGTAATTGAAATAGTACCATGCAACATATATATATATGAAAACAAAATCATATTAATATACATCCTCTCACTCATTACTCAAAAAATAAAATAAAAATATTGTAAAAAAAATAGTAACAAAAACTTATCGTGACAAATTATTATTAGTCCACGATGCGAGTGGTGGATAGCGTCACAAGATAGATTGTTTATTGTTTTGAATTATTTACAGATGATTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGATAAGGGCGGGAAGAGGTGGCGGACAATGGCGGAGTGGGAGCAGTTGCCGAGGGTGCCGTCGGGACCTGACCCATTGCATCACAATGGTGGAAGCCCAAAGAAGCCTAGAACTCCTTGAACCATTAAAACGCTGTCGTATTATTCCAACTTCTAATATATCTTCACATCTCCATGAGGAGAAAGATTTTGAAAGTAGGGGTTTTTGGCTGATCCCAACAACAAAACTAAAACCTACAGATCTTTTTTTTTTTCTTTTTGGGTTTTCTTTGATTATTATTTTGTCTGTTTGTCTTTTTTCTTTTTATGAATTTTGAATTTTTATATCATATATGAATGGATGATCGTGTTCCCTGTTCATATATGTTATATGAAAATTGTAGCCTTGAACCTTTATCGTGAAAGATCTTTAATTAATGTTCTCC

mRNA sequence

CAAAATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTCTTTCTCTTTTTCTTCCTCGCTCATAGTCTCTTTTCTTCTGATTATAACTATTGCTGCTGGAGAGTTGGCCAATGTCGTTGCGTTTCCGGTAAGCTGTCGGTCTCTCGAGCGCTTCACATGAGCCGGAAGATGATTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGATAAGGGCGGGAAGAGGTGGCGGACAATGGCGGAGTGGGAGCAGTTGCCGAGGGTGCCGTCGGGACCTGACCCATTGCATCACAATGGTGGAAGCCCAAAGAAGCCTAGAACTCCTTGAACCATTAAAACGCTGTCGTATTATTCCAACTTCTAATATATCTTCACATCTCCATGAGGAGAAAGATTTTGAAAGTAGGGGTTTTTGGCTGATCCCAACAACAAAACTAAAACCTACAGATCTTTTTTTTTTTCTTTTTGGGTTTTCTTTGATTATTATTTTGTCTGTTTGTCTTTTTTCTTTTTATGAATTTTGAATTTTTATATCATATATGAATGGATGATCGTGTTCCCTGTTCATATATGTTATATGAAAATTGTAGCCTTGAACCTTTATCGTGAAAGATCTTTAATTAATGTTCTCC

Coding sequence (CDS)

ATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTCTTTCTCTTTTTCTTCCTCGCTCATAGTCTCTTTTCTTCTGATTATAACTATTGCTGCTGGAGAGTTGGCCAATGTCGTTGCGTTTCCGGTAAGCTGTCGGTCTCTCGAGCGCTTCACATGAGCCGGAAGATGATTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGATAAGGGCGGGAAGAGGTGGCGGACAATGGCGGAGTGGGAGCAGTTGCCGAGGGTGCCGTCGGGACCTGACCCATTGCATCACAATGGTGGAAGCCCAAAGAAGCCTAGAACTCCTTGA

Protein sequence

MASPSPSSFLSLLFLFFFLAHSLFSSDYNYCCWRVGQCRCVSGKLSVSRALHMSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLHHNGGSPKKPRTP

Homology

[Close]

BLAST of MELO3C035640.2 vs. NCBI nr
Match: PPS09121.1 (hypothetical protein GOBAR_AA11517 [Gossypium barbadense])

HSP 1 Score: 59.7 bits (143), Expect = 7.0e-06
Identity = 34/71 (47.89%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 36  GQCRCVSGKLSVSRALHMSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLH 95
           G C CVSG          +RK++    KE      G         WE L  VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFHEKPAQNRKILHADLKENNGSTTGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 96  HNGGSPKKPRT 107
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

[Close]

BLAST of MELO3C035640.2 vs. NCBI nr
Match: XP_012485163.1 (PREDICTED: protein CLAVATA 3 [Gossypium raimondii] >KJB35441.1 hypothetical protein B456_006G114900 [Gossypium raimondii] >PPD76561.1 hypothetical protein GOBAR_DD26510 [Gossypium barbadense] >PPS09120.1 hypothetical protein GOBAR_AA11516 [Gossypium barbadense])

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 34/71 (47.89%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 36  GQCRCVSGKLSVSRALHMSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLH 95
           G C CVSG          +RK++    KE      G         WE L  VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFHEKPAQNRKILHADLKENNGSITGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 96  HNGGSPKKPRT 107
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

[Close]

BLAST of MELO3C035640.2 vs. NCBI nr
Match: XP_018829733.1 (PREDICTED: uncharacterized protein LOC108997815 [Juglans regia])

HSP 1 Score: 53.9 bits (128), Expect = 3.9e-04
Identity = 32/72 (44.44%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 44  KLSVSRALHMSRKMIVEMKKEME--------EGDKGGKRWRTMAEWEQLPRVPSGPDPLH 103
           K +VS     SRK++  +K + E        +    G    +   WE L RVPSGPDPLH
Sbjct: 45  KAAVSSERENSRKLLAGLKYKKETVKVKGGLQASATGSNGGSFQGWE-LRRVPSGPDPLH 104

Query: 104 HNGGSPKKPRTP 108
           HNGG+P KPRTP
Sbjct: 105 HNGGNPTKPRTP 115

[Close]

BLAST of MELO3C035640.2 vs. NCBI nr
Match: PIN10646.1 (hypothetical protein CDL12_16767 [Handroanthus impetiginosus])

HSP 1 Score: 53.5 bits (127), Expect = 5.0e-04
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 0


Query: 1   MASPSPSSFLSLLFLFFFLAHSLFSSDYNYCCWRVGQCRCVSGKLSVSRALHMSRKMIVE 60
           MA    SS L +L +      +LF  D+  C          S   +  + LH  RK+ +E
Sbjct: 1   MAKTKSSSALCMLLII-----TLFVQDFAEC----------SNSGASLKVLH--RKLFLE 60

Query: 61  MKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLHHNGGSPKKPRTP 108
           MKK   +        + M E  +L RVP+GPDPLHHNG +PKKPRTP
Sbjct: 61  MKKMALKNGAPSYGNKEMPEDWELRRVPAGPDPLHHNGQNPKKPRTP 90

[Close]

BLAST of MELO3C035640.2 vs. NCBI nr
Match: XP_015873114.2 (protein CLAVATA 3 [Ziziphus jujuba])

HSP 1 Score: 53.1 bits (126), Expect = 6.6e-04
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 54  SRKMIVEMKKEMEEGDK------GGKRWRTMAEWE-QLPRVPSGPDPLHHNGGSPKKPRT 108
           +RK++  +K++ EE  K      GG  +  +  W+ QL +VPSGPDPLHHNG SPKKPRT
Sbjct: 29  NRKVLGGLKEKKEELHKSASSGNGGNNY--LMGWDYQLRKVPSGPDPLHHNGNSPKKPRT 87

[Close]

BLAST of MELO3C035640.2 vs. TrEMBL
Match: tr|A0A2P5Y0N4|A0A2P5Y0N4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11517 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.7e-06
Identity = 34/71 (47.89%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 36  GQCRCVSGKLSVSRALHMSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLH 95
           G C CVSG          +RK++    KE      G         WE L  VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFHEKPAQNRKILHADLKENNGSTTGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 96  HNGGSPKKPRT 107
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

[Close]

BLAST of MELO3C035640.2 vs. TrEMBL
Match: tr|A0A2P5QPW6|A0A2P5QPW6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11516 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.9e-06
Identity = 34/71 (47.89%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 36  GQCRCVSGKLSVSRALHMSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLH 95
           G C CVSG          +RK++    KE      G         WE L  VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFHEKPAQNRKILHADLKENNGSITGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 96  HNGGSPKKPRT 107
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

[Close]

BLAST of MELO3C035640.2 vs. TrEMBL
Match: tr|A0A0D2S155|A0A0D2S155_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G114900 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.9e-06
Identity = 34/71 (47.89%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 36  GQCRCVSGKLSVSRALHMSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLH 95
           G C CVSG          +RK++    KE      G         WE L  VPSGPDPLH
Sbjct: 27  GVCGCVSGHGCFHEKPAQNRKILHADLKENNGSITGAGNMENFVGWE-LRAVPSGPDPLH 86

Query: 96  HNGGSPKKPRT 107
           HNGGSPKKPRT
Sbjct: 87  HNGGSPKKPRT 96

[Close]

BLAST of MELO3C035640.2 vs. TrEMBL
Match: tr|A0A2I4FDL8|A0A2I4FDL8_9ROSI (uncharacterized protein LOC108997815 OS=Juglans regia OX=51240 GN=LOC108997815 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-04
Identity = 32/72 (44.44%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 44  KLSVSRALHMSRKMIVEMKKEME--------EGDKGGKRWRTMAEWEQLPRVPSGPDPLH 103
           K +VS     SRK++  +K + E        +    G    +   WE L RVPSGPDPLH
Sbjct: 45  KAAVSSERENSRKLLAGLKYKKETVKVKGGLQASATGSNGGSFQGWE-LRRVPSGPDPLH 104

Query: 104 HNGGSPKKPRTP 108
           HNGG+P KPRTP
Sbjct: 105 HNGGNPTKPRTP 115

[Close]

BLAST of MELO3C035640.2 vs. TrEMBL
Match: tr|A0A2G9GZD0|A0A2G9GZD0_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16767 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.3e-04
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 0


Query: 1   MASPSPSSFLSLLFLFFFLAHSLFSSDYNYCCWRVGQCRCVSGKLSVSRALHMSRKMIVE 60
           MA    SS L +L +      +LF  D+  C          S   +  + LH  RK+ +E
Sbjct: 1   MAKTKSSSALCMLLII-----TLFVQDFAEC----------SNSGASLKVLH--RKLFLE 60

Query: 61  MKKEMEEGDKGGKRWRTMAEWEQLPRVPSGPDPLHHNGGSPKKPRTP 108
           MKK   +        + M E  +L RVP+GPDPLHHNG +PKKPRTP
Sbjct: 61  MKKMALKNGAPSYGNKEMPEDWELRRVPAGPDPLHHNGQNPKKPRTP 90

The following BLAST results are available for this feature:

BLAST of MELO3C035640.2 vs. NCBI nr


Match Name	E-value	Identity	Description
PPS09121.1	7.0e-06	47.89	hypothetical protein GOBAR_AA11517 [Gossypium barbadense]	[more]
XP_012485163.1	1.2e-05	47.89	PREDICTED: protein CLAVATA 3 [Gossypium raimondii] >KJB35441.1 hypothetical prot...	[more]
XP_018829733.1	3.9e-04	44.44	PREDICTED: uncharacterized protein LOC108997815 [Juglans regia]	[more]
PIN10646.1	5.0e-04	38.32	hypothetical protein CDL12_16767 [Handroanthus impetiginosus]	[more]
XP_015873114.2	6.6e-04	50.82	protein CLAVATA 3 [Ziziphus jujuba]	[more]

BLAST of MELO3C035640.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035640.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035640.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5Y0N4\|A0A2P5Y0N4_GOSBA	4.7e-06	47.89	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11517 PE=4 SV...	[more]
tr\|A0A2P5QPW6\|A0A2P5QPW6_GOSBA	7.9e-06	47.89	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA11516 PE=4 SV...	[more]
tr\|A0A0D2S155\|A0A0D2S155_GOSRA	7.9e-06	47.89	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G114900 PE=4 ...	[more]
tr\|A0A2I4FDL8\|A0A2I4FDL8_9ROSI	2.6e-04	44.44	uncharacterized protein LOC108997815 OS=Juglans regia OX=51240 GN=LOC108997815 P...	[more]
tr\|A0A2G9GZD0\|A0A2G9GZD0_9LAMI	3.3e-04	38.32	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16767 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
biological_process	GO:0030154	cell differentiation
biological_process	GO:0045087	innate immune response
biological_process	GO:0010074	maintenance of meristem identity
biological_process	GO:0048507	meristem development
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0009934	regulation of meristem structural organization
biological_process	GO:0008150	biological_process
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005615	extracellular space
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0033612	receptor serine/threonine kinase binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035640.2.1	MELO3C035640.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..107
None	No IPR available	PANTHER	PTHR36349:SF2	PROTEIN CLAVATA 3	coord: 1..107
None	No IPR available	PANTHER	PTHR36349	FAMILY NOT NAMED	coord: 1..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C035640.2	Lsi02G011840	Bottle gourd (USVL1VR-Ls)	lsimedB186
MELO3C035640.2	CsaV3_1G015250	Cucumber (Chinese Long) v3	cucmedB025

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035640.2	Cucurbita pepo (Zucchini)	cpemedB562