CsaV3_1G010350 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G010350
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr1 : 6454530 .. 6456455 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTCCACTATTTCTTGAATTGGTAGAGCAAGGCAAAGCCAAGTGAGTGAGGATGGATGAAAGTTTAACGGAAGGGTTCAAATTTAGAGGAATCTTTGATCCCCATTTTAAATCTCCAGTTAATCGCCGCAAGATTAATTCTTCTCCAAACGGAACCAAGAAGCCTACTGATGCAGAGGTTAAAAATTCTGCAAACAAACATCCAGAAAAAGATCCCAATTTTCCCAGCTCTTCAAAGCCAAAGCCACAAGCTGCAGCAAGGAATTCTAATCCCAACAGCAACTCCGCGCCATCTTCTCCAGCTCCACCTCCGACTCCTATTCCGACTACTCGAAAGACAAAAAGTCAACCCCCCACTCCTTCTCCAGCTCTACCTCCGACTCCGAGTCCGACTCCGAGTCCGACTCGAAAAACAAAATGTCAACCCACCATGCCTTCTTCTTCTTCAAAGAACAACGTTGTAAGACGTATTTATAATGATAATTCTCCAAAAGCTTCTCCCAAGATTTCTCCCACCTCTGGGTCAGATTGTCATGAGAAAGCTGTCAAAACTACTGCTTATCCTAATTCACCTGCATCTTCTGATCCTTCTAATGATATTGGTCATCGGTTGTTACAAGGCCTTTCTTTTGAAGGTCAGTTTTGATATTACTCACATCTTTTTTTTTTCTTTTGTAAATTTTTAGGGTAATTGAAATGTGTAATCACTTCTACACACCACTAATAATTAATTCAATAAAAATATTTTAAAAAACAATAAAAAACAGTGAAAGGGGAATTGTTTATATGGCAAAAAAAAAAAAAATGAAAATATTACATCAAAATTTAGTAATATGGTATTTTGCAATATCTTGGTTCATTTTGTCCAAAGACTTAGTTTTATCATTGATTACCCTTATTCTACCCGGATTAAAAAGTATACAAAGTTTTGTTGTAATTATATAGTTTTGTATGTGTTTCTTCAAGTTATTCTTGATATATCTATTTTAATCTTTTACTGGTGGACGAAAAAAATAACATGTGTGTAGGTAAAGACCTTGACGACATCCTCAAAGGAAACTCAATAGATGATTTAATGGGCTCAAATAATAAAAAGGAAGAATCTTCACCTCGAAACGTTTCTAGTTTGGCTATATTACAAATTTACCAGAAAATTGCATCCCATCGACAAGGAAACTTATCCGTTGAACGTTACTTCAAAAAGCTCAAGAAATTATGGAATGACATTGGAACCTATAGCAGTGATTTTGCTCAAGGTTATTCTAGCAATGGTACAATTGCATTTTGGAGCGAGCTTACAGAAAGAGACAAAGTTATGCAATTTTTTATTGGACTAAATGATTATTATTCCATAATTTGCTCCCAAATCCTAGTTAACCAGCCATTCCCAACAGTGGAGGAAGCTTATTCTGAAATAATTCGAGAAGAAAAACGTAGAGAATTGTTTGTTGCATTAGGAATTATGGCGGCACAAGTGATTCAAAGTAGTTACCAGTATGGTTCATCCAACAATGGTGATAATAAAAATCTTGGAATTGATCAAGAAATTGACAGAAGTATTTAACGTTGGATATCCTAATTAAGCAAAGTTGAAGATTTTCACCTGAAAGAAAATTCAAGGTTAATGCTCTTCTTCCCTCTCCATTTTTTAGATGGTTATAGTATGATAGACGTTAATGTTTTGCTATATTTTAAAAGACAAAACTTCTTACATTTTTCTACATTAAATTGCATTTTTCTTACATCTTTTTTGGTGTGCTTTCTCAGGATTAATTTGAAGGACGTACATAGCTAAGACAAACTTGTCCAGACTGTGTTGATCGTTATGGTGAGACACTTAATATGCATTTTTAATTGAAAAGATTAAACTTAAACCTCTTTTGGTGGTGAGTCAGAACATGTTATTTACATCTGTTTTATTCGCGGT

mRNA sequence

ATGGATGAAAGTTTAACGGAAGGGTTCAAATTTAGAGGAATCTTTGATCCCCATTTTAAATCTCCAGTTAATCGCCGCAAGATTAATTCTTCTCCAAACGGAACCAAGAAGCCTACTGATGCAGAGGTTAAAAATTCTGCAAACAAACATCCAGAAAAAGATCCCAATTTTCCCAGCTCTTCAAAGCCAAAGCCACAAGCTGCAGCAAGGAATTCTAATCCCAACAGCAACTCCGCGCCATCTTCTCCAGCTCCACCTCCGACTCCTATTCCGACTACTCGAAAGACAAAAAGTCAACCCCCCACTCCTTCTCCAGCTCTACCTCCGACTCCGAGTCCGACTCCGAGTCCGACTCGAAAAACAAAATGTCAACCCACCATGCCTTCTTCTTCTTCAAAGAACAACGTTGTAAGACGTATTTATAATGATAATTCTCCAAAAGCTTCTCCCAAGATTTCTCCCACCTCTGGGTCAGATTGTCATGAGAAAGCTGTCAAAACTACTGCTTATCCTAATTCACCTGCATCTTCTGATCCTTCTAATGATATTGGTCATCGGTTGTTACAAGGCCTTTCTTTTGAAGGTAAAGACCTTGACGACATCCTCAAAGGAAACTCAATAGATGATTTAATGGGCTCAAATAATAAAAAGGAAGAATCTTCACCTCGAAACGTTTCTAGTTTGGCTATATTACAAATTTACCAGAAAATTGCATCCCATCGACAAGGAAACTTATCCGTTGAACGTTACTTCAAAAAGCTCAAGAAATTATGGAATGACATTGGAACCTATAGCAGTGATTTTGCTCAAGGTTATTCTAGCAATGGTACAATTGCATTTTGGAGCGAGCTTACAGAAAGAGACAAAGTTATGCAATTTTTTATTGGACTAAATGATTATTATTCCATAATTTGCTCCCAAATCCTAGTTAACCAGCCATTCCCAACAGTGGAGGAAGCTTATTCTGAAATAATTCGAGAAGAAAAACGTAGAGAATTGTTTGTTGCATTAGGAATTATGGCGGCACAAGTGATTCAAAGTAGTTACCAGTATGGTTCATCCAACAATGGTGATAATAAAAATCTTGGAATTGATCAAGAAATTGACAGAAGTATTTAA

Coding sequence (CDS)

ATGGATGAAAGTTTAACGGAAGGGTTCAAATTTAGAGGAATCTTTGATCCCCATTTTAAATCTCCAGTTAATCGCCGCAAGATTAATTCTTCTCCAAACGGAACCAAGAAGCCTACTGATGCAGAGGTTAAAAATTCTGCAAACAAACATCCAGAAAAAGATCCCAATTTTCCCAGCTCTTCAAAGCCAAAGCCACAAGCTGCAGCAAGGAATTCTAATCCCAACAGCAACTCCGCGCCATCTTCTCCAGCTCCACCTCCGACTCCTATTCCGACTACTCGAAAGACAAAAAGTCAACCCCCCACTCCTTCTCCAGCTCTACCTCCGACTCCGAGTCCGACTCCGAGTCCGACTCGAAAAACAAAATGTCAACCCACCATGCCTTCTTCTTCTTCAAAGAACAACGTTGTAAGACGTATTTATAATGATAATTCTCCAAAAGCTTCTCCCAAGATTTCTCCCACCTCTGGGTCAGATTGTCATGAGAAAGCTGTCAAAACTACTGCTTATCCTAATTCACCTGCATCTTCTGATCCTTCTAATGATATTGGTCATCGGTTGTTACAAGGCCTTTCTTTTGAAGGTAAAGACCTTGACGACATCCTCAAAGGAAACTCAATAGATGATTTAATGGGCTCAAATAATAAAAAGGAAGAATCTTCACCTCGAAACGTTTCTAGTTTGGCTATATTACAAATTTACCAGAAAATTGCATCCCATCGACAAGGAAACTTATCCGTTGAACGTTACTTCAAAAAGCTCAAGAAATTATGGAATGACATTGGAACCTATAGCAGTGATTTTGCTCAAGGTTATTCTAGCAATGGTACAATTGCATTTTGGAGCGAGCTTACAGAAAGAGACAAAGTTATGCAATTTTTTATTGGACTAAATGATTATTATTCCATAATTTGCTCCCAAATCCTAGTTAACCAGCCATTCCCAACAGTGGAGGAAGCTTATTCTGAAATAATTCGAGAAGAAAAACGTAGAGAATTGTTTGTTGCATTAGGAATTATGGCGGCACAAGTGATTCAAAGTAGTTACCAGTATGGTTCATCCAACAATGGTGATAATAAAAATCTTGGAATTGATCAAGAAATTGACAGAAGTATTTAA

Protein sequence

MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSSSKPKPQAAARNSNPNSNSAPSSPAPPPTPIPTTRKTKSQPPTPSPALPPTPSPTPSPTRKTKCQPTMPSSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPSNDIGHRLLQGLSFEGKDLDDILKGNSIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYSSDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKRRELFVALGIMAAQVIQSSYQYGSSNNGDNKNLGIDQEIDRSI
Homology
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BLAST of CsaV3_1G010350 vs. NCBI nr
Match: KGN64484.1 (hypothetical protein Csa_1G058670 [Cucumis sativus])

HSP 1 Score: 584.7 bits (1506), Expect = 2.2e-163
Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 0 

Query: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60
           MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS
Sbjct: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXPTMPSSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS 180
           XXXXPTMPSSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS
Sbjct: 121 XXXXPTMPSSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS 180

Query: 181 NDIGHRLLQGLSFEGKDLDDILKGNSIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASH 240
           NDIGHRLLQGLSFEGKDLDDILKGNSIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASH
Sbjct: 181 NDIGHRLLQGLSFEGKDLDDILKGNSIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASH 240

Query: 241 RQGNLSVERYFKKLKKLWNDIGTYSSDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDY 300
           RQGNLSVERYFKKLKKLWNDIGTYSSDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDY
Sbjct: 241 RQGNLSVERYFKKLKKLWNDIGTYSSDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDY 300

Query: 301 YSIICSQILVNQPFPTVEEAYSEIIREEKRRELFVALGIMAAQVIQSSYQYGSSNNGDNK 360
           YSIICSQILVNQPFPTVEEAYSEIIREEKRRELFVALGIMAAQVIQSSYQYGSSNNGDNK
Sbjct: 301 YSIICSQILVNQPFPTVEEAYSEIIREEKRRELFVALGIMAAQVIQSSYQYGSSNNGDNK 360

Query: 361 NLGIDQEIDRSI 373
           NLGIDQEIDRSI
Sbjct: 361 NLGIDQEIDRSI 372

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BLAST of CsaV3_1G010350 vs. NCBI nr
Match: XP_011652531.1 (PREDICTED: protein ENL-like [Cucumis sativus] >KGN64485.1 hypothetical protein Csa_1G058680 [Cucumis sativus])

HSP 1 Score: 354.8 bits (909), Expect = 3.7e-94
Identity = 188/220 (85.45%), Postives = 197/220 (89.55%), Query Frame = 0 

Query: 153 SPTSGSDCHEKAVKTTAYPNSPASSDPSNDIGHRLLQGLSFEGKDLDDILKGNSIDDLMG 212
           SPTSGSD  +K VKTTA P+SP  SD S+DIG RLLQ LS EGKDLDDILKGN+IDDLMG
Sbjct: 143 SPTSGSDHRQKHVKTTADPHSPGYSDSSHDIGDRLLQRLSSEGKDLDDILKGNTIDDLMG 202

Query: 213 SNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYSSDFAQGY 272
           SNN+KEESS RNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIG YSS+  +G 
Sbjct: 203 SNNRKEESSSRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGIYSSESVEG- 262

Query: 273 SSNGTIAFWSELTERDKVMQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKRRE 332
                IAFWSELTERDKV+QFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKRRE
Sbjct: 263 -----IAFWSELTERDKVIQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKRRE 322

Query: 333 LFVALGIMAAQVIQSSYQYGSSNNGDNKNLGIDQEIDRSI 373
           LFVALG +AAQVIQSSYQ GSSNNGDNKNLGIDQEID SI
Sbjct: 323 LFVALGTVAAQVIQSSYQNGSSNNGDNKNLGIDQEIDTSI 356

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BLAST of CsaV3_1G010350 vs. NCBI nr
Match: XP_011648413.1 (PREDICTED: early nodulin-20-like [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 7.8e-60
Identity = 195/196 (99.49%), Postives = 196/196 (100.00%), Query Frame = 0 

Query: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60
           MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS
Sbjct: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXPTMPSSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS 180
           XXXXPTMPSSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS
Sbjct: 121 XXXXPTMPSSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS 180

Query: 181 NDIGHRLLQGLSFEGK 197
           NDIGHRLLQGLSFEG+
Sbjct: 181 NDIGHRLLQGLSFEGQ 196

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BLAST of CsaV3_1G010350 vs. NCBI nr
Match: XP_022954810.1 (serine/arginine repetitive matrix protein 1-like [Cucurbita moschata])

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-29
Identity = 95/237 (40.08%), Postives = 135/237 (56.96%), Query Frame = 0 

Query: 129 SSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPSNDIGHRLL 188
           S S   +   R    +S K +PK   +   +  +      +Y +    +   +D     L
Sbjct: 136 SGSGSRSDFSRAKPSDSQKGTPKNLRSGRLNDQQDEQIVRSYSDGSYGARTLSDPDVHKL 195

Query: 189 QGLSFEGKDLDDI-LKGNSIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSV 248
             LS + KDL +I L  N + + + S  K+EE S +  +S  + QIY++IASH QGN S+
Sbjct: 196 HQLSLDDKDLANIVLHANLVYESLASETKEEECSSQGNNSSRMFQIYKEIASHHQGNSSI 255

Query: 249 ERYFKKLKKLWNDIGTYSSDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDYYSIICSQ 308
             Y  KLK LW+++  Y         S G+    SE  ER+KVMQF IGLND YS IC+Q
Sbjct: 256 TSYITKLKALWDELEAY---IDTPKCSCGSTEKQSEQIEREKVMQFLIGLNDSYSTICAQ 315

Query: 309 ILVNQPFPTVEEAYSEIIREEKRRELFVALGIMAAQVIQSSY--QYGSSNNGDNKNL 363
           IL  +PFPTVE+A   I+REEKRREL ++L I+AA+VIQ+++  Q G S NGDN+ +
Sbjct: 316 ILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNGHSINGDNEEV 369

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BLAST of CsaV3_1G010350 vs. NCBI nr
Match: XP_022137024.1 (uncharacterized protein LOC111008588 [Momordica charantia] >XP_022137025.1 uncharacterized protein LOC111008588 [Momordica charantia] >XP_022137026.1 uncharacterized protein LOC111008588 [Momordica charantia])

HSP 1 Score: 139.0 bits (349), Expect = 3.2e-29
Identity = 94/217 (43.32%), Postives = 129/217 (59.45%), Query Frame = 0 

Query: 154 PTSGSDCHEKAVKTTAYPNSPASSDPSNDIGHRLLQGLSFEGKDLDD-ILKGNSIDDLMG 213
           P+ GS  H      + Y     +      + +  LQ LS +GKDL   IL  NSI + +G
Sbjct: 215 PSPGSAQHHDMKNHSPYSGGTYTPLADPQLNNH-LQRLSIDGKDLASIILHANSIYESIG 274

Query: 214 SNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYSSDFAQGY 273
           S+   EES   N     I QIY+ IASHRQ N SV  YF KLK LW+++ TYS D  Q  
Sbjct: 275 SDT-MEESFQSNAP--RIFQIYKDIASHRQENSSVTSYFTKLKILWDELETYSDDVPQ-C 334

Query: 274 SSNGTIAFWSELTERDKVMQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKRRE 333
            S G +   S   ER+KVMQF +GLN+ YS IC QIL+ QPFPT+E+AYS IIREEKR E
Sbjct: 335 CSCGAMEKLSGHVEREKVMQFLMGLNNSYSTICPQILLIQPFPTMEKAYSIIIREEKRME 394

Query: 334 LFVALGIMAAQVIQSSYQYGSSNNGDNKNLGIDQEID 370
           L  +L ++AA+V+++ +   +  + +  + GI +E++
Sbjct: 395 LVTSLEMVAAKVMENKWLLQNDQSSNGYDDGIHEEVN 426

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BLAST of CsaV3_1G010350 vs. TAIR10
Match: AT1G21280.1 (Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 49.3 bits (116), Expect = 6.0e-06
Identity = 29/101 (28.71%), Postives = 56/101 (55.45%), Query Frame = 0 

Query: 228 LAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYS--SDFAQGYSSNGTIAFWSELT 287
           L I Q+ +++A+ RQG  SVE YF KL K+W ++  Y+   +   G  +        E  
Sbjct: 125 LKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAR 184

Query: 288 ERDKVMQFFIG--LNDYYSIICSQILVNQPFPTVEEAYSEI 325
           E+++  +F +G  LN  +  + ++I+  +P P++ EA++ +
Sbjct: 185 EKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMV 225

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BLAST of CsaV3_1G010350 vs. TrEMBL
Match: tr|A0A0A0LU31|A0A0A0LU31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058670 PE=4 SV=1)

HSP 1 Score: 584.7 bits (1506), Expect = 1.4e-163
Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 0 

Query: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60
           MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS
Sbjct: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXPTMPSSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS 180
           XXXXPTMPSSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS
Sbjct: 121 XXXXPTMPSSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS 180

Query: 181 NDIGHRLLQGLSFEGKDLDDILKGNSIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASH 240
           NDIGHRLLQGLSFEGKDLDDILKGNSIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASH
Sbjct: 181 NDIGHRLLQGLSFEGKDLDDILKGNSIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASH 240

Query: 241 RQGNLSVERYFKKLKKLWNDIGTYSSDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDY 300
           RQGNLSVERYFKKLKKLWNDIGTYSSDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDY
Sbjct: 241 RQGNLSVERYFKKLKKLWNDIGTYSSDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDY 300

Query: 301 YSIICSQILVNQPFPTVEEAYSEIIREEKRRELFVALGIMAAQVIQSSYQYGSSNNGDNK 360
           YSIICSQILVNQPFPTVEEAYSEIIREEKRRELFVALGIMAAQVIQSSYQYGSSNNGDNK
Sbjct: 301 YSIICSQILVNQPFPTVEEAYSEIIREEKRRELFVALGIMAAQVIQSSYQYGSSNNGDNK 360

Query: 361 NLGIDQEIDRSI 373
           NLGIDQEIDRSI
Sbjct: 361 NLGIDQEIDRSI 372

[Close]
BLAST of CsaV3_1G010350 vs. TrEMBL
Match: tr|A0A0A0LRE6|A0A0A0LRE6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058680 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.4e-94
Identity = 188/220 (85.45%), Postives = 197/220 (89.55%), Query Frame = 0 

Query: 153 SPTSGSDCHEKAVKTTAYPNSPASSDPSNDIGHRLLQGLSFEGKDLDDILKGNSIDDLMG 212
           SPTSGSD  +K VKTTA P+SP  SD S+DIG RLLQ LS EGKDLDDILKGN+IDDLMG
Sbjct: 143 SPTSGSDHRQKHVKTTADPHSPGYSDSSHDIGDRLLQRLSSEGKDLDDILKGNTIDDLMG 202

Query: 213 SNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYSSDFAQGY 272
           SNN+KEESS RNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIG YSS+  +G 
Sbjct: 203 SNNRKEESSSRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGIYSSESVEG- 262

Query: 273 SSNGTIAFWSELTERDKVMQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKRRE 332
                IAFWSELTERDKV+QFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKRRE
Sbjct: 263 -----IAFWSELTERDKVIQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKRRE 322

Query: 333 LFVALGIMAAQVIQSSYQYGSSNNGDNKNLGIDQEIDRSI 373
           LFVALG +AAQVIQSSYQ GSSNNGDNKNLGIDQEID SI
Sbjct: 323 LFVALGTVAAQVIQSSYQNGSSNNGDNKNLGIDQEIDTSI 356

[Close]
BLAST of CsaV3_1G010350 vs. TrEMBL
Match: tr|A0A0A0LRX9|A0A0A0LRX9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059720 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-20
Identity = 72/187 (38.50%), Postives = 109/187 (58.29%), Query Frame = 0 

Query: 153 SPTSGSDCHEKAVKTTAYPN-SPASSDPSNDIGHRLLQGLSFEGKDLDDILKGN-----S 212
           +P  GS  H    K +  PN SP+    ++ +    L  LS    +++D++  N     S
Sbjct: 48  TPKDGSSHH----KFSDSPNHSPSPVKTADHLLQNQLHHLSIH--EVNDVVANNVHQSRS 107

Query: 213 IDDLMGSNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYSS 272
           I   + S+   E+ +  + S   +L+IY+ IASHR+GN S++ YF+ LK LWN+    S 
Sbjct: 108 IHKSVSSDTIIEQHNSESNSPTMLLKIYELIASHRKGNTSIKSYFRNLKALWNEAAASSI 167

Query: 273 DF-AQGYSSNGTIAFWSELTERDKVMQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEII 332
           +  +   SSN  I   SE  ER+K+MQF +GLND YS++CSQIL  +P PTV++AYS I+
Sbjct: 168 NLNSPQSSSNNAIEERSEFMEREKLMQFLLGLNDSYSLLCSQILAVRPSPTVDQAYSLIV 227

[Close]
BLAST of CsaV3_1G010350 vs. TrEMBL
Match: tr|A0A1S3B205|A0A1S3B205_CUCME (uncharacterized protein LOC103485124 OS=Cucumis melo OX=3656 GN=LOC103485124 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.7e-16
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 0 

Query: 206 SIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYS 265
           SI D     N  E ++P       + +IY++IA HRQG  S++ Y++ LK+LWN+  + +
Sbjct: 90  SIHDDTNEQNNPESNTP------ILSKIYKEIAFHRQGKTSIKTYYENLKQLWNEAASST 149

Query: 266 SDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEII 325
              +   SSN  I    EL ERDK+M F +GL D YS +CSQ L+ +P  TV+EAYS II
Sbjct: 150 CTNSPQSSSNIAIVDHIELMERDKLMLFLLGLKDSYSSLCSQFLL-KPSQTVDEAYSTII 209

Query: 326 REEKRRE 333
           RE+K R+
Sbjct: 210 REKKGRK 209

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BLAST of CsaV3_1G010350 vs. TrEMBL
Match: tr|A0A2K3MT28|A0A2K3MT28_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g017068 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-12
Identity = 45/117 (38.46%), Postives = 71/117 (60.68%), Query Frame = 0 

Query: 217 KEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYSSDFAQGYSSNG 276
           K++ S +N+   AI QI + +AS  QG +SV  YF K+K LW+++ +Y +       +  
Sbjct: 105 KDQFSQKNIP--AIYQIQKSLASLSQGTMSVSTYFTKIKGLWDELESYRT-----LPTCS 164

Query: 277 TIAFWSELTERDKVMQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKRREL 334
            +    E  E D++MQF +GLND YS + S IL+  P P V +AYS +I+EE +R++
Sbjct: 165 QMKAHDEQREEDRLMQFLMGLNDSYSTVRSNILMMSPLPNVRQAYSLVIQEETQRQM 214

The following BLAST results are available for this feature:
BLAST of CsaV3_1G010350 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64484.12.2e-163100.00hypothetical protein Csa_1G058670 [Cucumis sativus][more]
XP_011652531.13.7e-9485.45PREDICTED: protein ENL-like [Cucumis sativus] >KGN64485.1 hypothetical protein C... [more]
XP_011648413.17.8e-6099.49PREDICTED: early nodulin-20-like [Cucumis sativus][more]
XP_022954810.11.1e-2940.08serine/arginine repetitive matrix protein 1-like [Cucurbita moschata][more]
XP_022137024.13.2e-2943.32uncharacterized protein LOC111008588 [Momordica charantia] >XP_022137025.1 uncha... [more]
BLAST of CsaV3_1G010350 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G21280.16.0e-0628.71Retrotransposon gag protein (InterPro:IPR005162)[more]
BLAST of CsaV3_1G010350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010350 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LU31|A0A0A0LU31_CUCSA1.4e-163100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058670 PE=4 SV=1[more]
tr|A0A0A0LRE6|A0A0A0LRE6_CUCSA2.4e-9485.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058680 PE=4 SV=1[more]
tr|A0A0A0LRX9|A0A0A0LRX9_CUCSA1.8e-2038.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059720 PE=4 SV=1[more]
tr|A0A1S3B205|A0A1S3B205_CUCME2.7e-1643.31uncharacterized protein LOC103485124 OS=Cucumis melo OX=3656 GN=LOC103485124 PE=... [more]
tr|A0A2K3MT28|A0A2K3MT28_TRIPR2.3e-1238.46Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g017068 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G010350.1CsaV3_1G010350.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..162
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 229..360
NoneNo IPR availablePANTHERPTHR34222:SF2SUBFAMILY NOT NAMEDcoord: 229..360

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G010350CSPI01G10300Wild cucumber (PI 183967)cpicucB001
CsaV3_1G010350CSPI01G10370Wild cucumber (PI 183967)cpicucB017
CsaV3_1G010350Cucsa.134310Cucumber (Gy14) v1cgycucB196
CsaV3_1G010350CmaCh18G002740Cucurbita maxima (Rimu)cmacucB0474
CsaV3_1G010350CmoCh18G002570Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G010350CsGy1G010300Cucumber (Gy14) v2cgybcucB002
CsaV3_1G010350Cla019355Watermelon (97103) v1cucwmB013
CsaV3_1G010350MELO3C002428Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G010350MELO3C002435Melon (DHL92) v3.5.1cucmeB035
CsaV3_1G010350ClCG03G004440Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G010350Lsi02G005610Bottle gourd (USVL1VR-Ls)cuclsiB029
CsaV3_1G010350MELO3C002428.2Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G010350MELO3C002435.2Melon (DHL92) v3.6.1cucmedB032
CsaV3_1G010350Cla97C03G055550Watermelon (97103) v2cucwmbB030
CsaV3_1G010350Bhi08G001474Wax gourdcucwgoB037
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G010350Cucurbita moschata (Rifu)cmocucB0222
CsaV3_1G010350Cucurbita moschata (Rifu)cmocucB0235
CsaV3_1G010350Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G010350Cucurbita pepo (Zucchini)cpecucB0624
CsaV3_1G010350Cucurbita pepo (Zucchini)cpecucB0634
CsaV3_1G010350Wild cucumber (PI 183967)cpicucB010
CsaV3_1G010350Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G010350Bottle gourd (USVL1VR-Ls)cuclsiB045
CsaV3_1G010350Melon (DHL92) v3.5.1cucmeB021
CsaV3_1G010350Melon (DHL92) v3.6.1cucmedB019
CsaV3_1G010350Watermelon (Charleston Gray)cucwcgB060
CsaV3_1G010350Watermelon (97103) v1cucwmB036
CsaV3_1G010350Watermelon (97103) v2cucwmbB040
CsaV3_1G010350Silver-seed gourdcarcucB0529
CsaV3_1G010350Silver-seed gourdcarcucB1046
CsaV3_1G010350Cucumber (Gy14) v1cgycucB089
CsaV3_1G010350Cucurbita maxima (Rimu)cmacucB0235
CsaV3_1G010350Cucurbita maxima (Rimu)cmacucB0249