CsGy1G010300 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G010300
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Copia-like polyprotein/retrotransposon
Location	Chr1 : 6436108 .. 6437602 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAAGTTTAACGGAAGGGTTCAAATTTAGAGGAATCTTTGATCCCCATTTTAAATCTCCAGTTAATCGCCGCAAGATTAATTCTTCTCCAAACGGAACCAAGAAGCCTACTGATGCAGAGGTTAAAAATTCTGCAAACAAACATCCAGAAAAAGATCCCAATTTTCCCAGCTCTTCAAAGCCAAAGCCACAAGCTGCAGCAAGGAATTCTAATCCCAACAGCAACTCCGCGCCATCTTCTCCAGCTCCACCTCCGACTCCTATTCCGACTACTCGAAAGACAAAAAGTCAACCCCCCACTCCTTCTCCAGCTCTACCAACGACTCCGAGTCCGACTCGAAAAACAAAATGTCAACCCACCATGCCTTCTTCTTCTTCAAAGAACAACGTTGTAAGACGTATTTATAATGATAATTCTCCAAAAGCTTCTCCCAAGATTTCTCCCACCTCTGGGTCAGATTGTCATGAGAAAGCTGTCAAAACTACTGCTTATCCTAATCCACCTGCATCTTCTGATCCTTCTAATGATATTGGTCATCGGTTGTTACAAGGCCTTTCTTTTGAAGGTCAGTTTTGATATTACTTCACATCTTTTTTTTTTTCTTTTGTAAATTTTTAGGGTAATTGAAATGTGTAATCACTTCTACACACCACTAATAATTAATTCAATAAAAATATTTTAAAAAACAGTGAAAGGGGAATTGTTTGTATGGCAAAAAACAAAAAAAAAAATGAAAATATTACATCAAAATTTAGTAATATGGTATTTTGCAATATCTTGGTTCATTTTGTCCAAAGACTTAGTTTTATCATTGATTACCCTTATTCTACCCGGATTAAAAGTATACAAAGTTATGTTGCAATTATATAGTTTTGTATGTGTTTCTTCAAGTTATTCTTGATATATCTATTTTAATCTTTTACTGGTGGACGAAAAAAATAACATGTGTGTAGGTAAAGACCTTGACGACATCCTCAAAGGAAACTCAATAGATGATTTAATGGGCTCAAATAATAAAAAGGAAGAATCTTCACCTCGAAACGTTTCTAGTTTGGCTATATTACAAATTTACCAGAAAATTGCATCTCATCGACAAGGAAACTTATCCGTTGAACGTTACTTCAAAAAGCTCAAGAAATTATGGAATGATATTGGAACCTATAGCAGTGATTTTGCTCAAGGTTATTCTAGCAATGGTACAATTGCATTTTGGAGCGAGCTTACAGAAAGAGACAAAGTTATGCAATTTTTTATTGGACTAAATGATTATTATTCCACAATTTGCTCCCAAATCCTAGTTAACCAGCCATTCCCAACAGTGGAGGAAGCTTATTCTGAAATAATTCGAGAAGAAAAACGTAGAGAATTGTTTGTTGCATTAGGAATTGTGGCGGCACAAGTGATTCAAAGTAGTTACCAGTATGGTTCATCCAACAATGGTGATAATAAAAATCTTGGAATTGATCAAGAAATTGACAGAAGTATTTAA

mRNA sequence

ATGGATGAAAGTTTAACGGAAGGGTTCAAATTTAGAGGAATCTTTGATCCCCATTTTAAATCTCCAGTTAATCGCCGCAAGATTAATTCTTCTCCAAACGGAACCAAGAAGCCTACTGATGCAGAGGTTAAAAATTCTGCAAACAAACATCCAGAAAAAGATCCCAATTTTCCCAGCTCTTCAAAGCCAAAGCCACAAGCTGCAGCAAGGAATTCTAATCCCAACAGCAACTCCGCGCCATCTTCTCCAGCTCCACCTCCGACTCCTATTCCGACTACTCGAAAGACAAAAAGTCAACCCCCCACTCCTTCTCCAGCTCTACCAACGACTCCGAGTCCGACTCGAAAAACAAAATGTCAACCCACCATGCCTTCTTCTTCTTCAAAGAACAACGTTGTAAGACGTATTTATAATGATAATTCTCCAAAAGCTTCTCCCAAGATTTCTCCCACCTCTGGGTCAGATTGTCATGAGAAAGCTGTCAAAACTACTGCTTATCCTAATCCACCTGCATCTTCTGATCCTTCTAATGATATTGGTCATCGGTTGTTACAAGGCCTTTCTTTTGAAGGTAAAGACCTTGACGACATCCTCAAAGGAAACTCAATAGATGATTTAATGGGCTCAAATAATAAAAAGGAAGAATCTTCACCTCGAAACGTTTCTAGTTTGGCTATATTACAAATTTACCAGAAAATTGCATCTCATCGACAAGGAAACTTATCCGTTGAACGTTACTTCAAAAAGCTCAAGAAATTATGGAATGATATTGGAACCTATAGCAGTGATTTTGCTCAAGGTTATTCTAGCAATGGTACAATTGCATTTTGGAGCGAGCTTACAGAAAGAGACAAAGTTATGCAATTTTTTATTGGACTAAATGATTATTATTCCACAATTTGCTCCCAAATCCTAGTTAACCAGCCATTCCCAACAGTGGAGGAAGCTTATTCTGAAATAATTCGAGAAGAAAAACGTAGAGAATTGTTTGTTGCATTAGGAATTGTGGCGGCACAAGTGATTCAAAGTAGTTACCAGTATGGTTCATCCAACAATGGTGATAATAAAAATCTTGGAATTGATCAAGAAATTGACAGAAGTATTTAA

Coding sequence (CDS)

ATGGATGAAAGTTTAACGGAAGGGTTCAAATTTAGAGGAATCTTTGATCCCCATTTTAAATCTCCAGTTAATCGCCGCAAGATTAATTCTTCTCCAAACGGAACCAAGAAGCCTACTGATGCAGAGGTTAAAAATTCTGCAAACAAACATCCAGAAAAAGATCCCAATTTTCCCAGCTCTTCAAAGCCAAAGCCACAAGCTGCAGCAAGGAATTCTAATCCCAACAGCAACTCCGCGCCATCTTCTCCAGCTCCACCTCCGACTCCTATTCCGACTACTCGAAAGACAAAAAGTCAACCCCCCACTCCTTCTCCAGCTCTACCAACGACTCCGAGTCCGACTCGAAAAACAAAATGTCAACCCACCATGCCTTCTTCTTCTTCAAAGAACAACGTTGTAAGACGTATTTATAATGATAATTCTCCAAAAGCTTCTCCCAAGATTTCTCCCACCTCTGGGTCAGATTGTCATGAGAAAGCTGTCAAAACTACTGCTTATCCTAATCCACCTGCATCTTCTGATCCTTCTAATGATATTGGTCATCGGTTGTTACAAGGCCTTTCTTTTGAAGGTAAAGACCTTGACGACATCCTCAAAGGAAACTCAATAGATGATTTAATGGGCTCAAATAATAAAAAGGAAGAATCTTCACCTCGAAACGTTTCTAGTTTGGCTATATTACAAATTTACCAGAAAATTGCATCTCATCGACAAGGAAACTTATCCGTTGAACGTTACTTCAAAAAGCTCAAGAAATTATGGAATGATATTGGAACCTATAGCAGTGATTTTGCTCAAGGTTATTCTAGCAATGGTACAATTGCATTTTGGAGCGAGCTTACAGAAAGAGACAAAGTTATGCAATTTTTTATTGGACTAAATGATTATTATTCCACAATTTGCTCCCAAATCCTAGTTAACCAGCCATTCCCAACAGTGGAGGAAGCTTATTCTGAAATAATTCGAGAAGAAAAACGTAGAGAATTGTTTGTTGCATTAGGAATTGTGGCGGCACAAGTGATTCAAAGTAGTTACCAGTATGGTTCATCCAACAATGGTGATAATAAAAATCTTGGAATTGATCAAGAAATTGACAGAAGTATTTAA

Protein sequence

MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSSSKPKPQAAARNSNPNSNSAPSSPAPPPTPIPTTRKTKSQPPTPSPALPTTPSPTRKTKCQPTMPSSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNPPASSDPSNDIGHRLLQGLSFEGKDLDDILKGNSIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYSSDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDYYSTICSQILVNQPFPTVEEAYSEIIREEKRRELFVALGIVAAQVIQSSYQYGSSNNGDNKNLGIDQEIDRSI

Homology

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BLAST of CsGy1G010300 vs. NCBI nr
Match: KGN64484.1 (hypothetical protein Csa_1G058670 [Cucumis sativus])

HSP 1 Score: 560.8 bits (1444), Expect = 3.3e-156
Identity = 359/372 (96.51%), Postives = 360/372 (96.77%), Query Frame = 0


Query: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60
           MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS
Sbjct: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60

Query: 61  ----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNPPASSDPS 180
           XXXX      SSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPN PASSDPS
Sbjct: 121 XXXXPTMPSSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS 180

Query: 181 NDIGHRLLQGLSFEGKDLDDILKGNSIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASH 240
           NDIGHRLLQGLSFEGKDLDDILKGNSIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASH
Sbjct: 181 NDIGHRLLQGLSFEGKDLDDILKGNSIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASH 240

Query: 241 RQGNLSVERYFKKLKKLWNDIGTYSSDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDY 300
           RQGNLSVERYFKKLKKLWNDIGTYSSDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDY
Sbjct: 241 RQGNLSVERYFKKLKKLWNDIGTYSSDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDY 300

Query: 301 YSTICSQILVNQPFPTVEEAYSEIIREEKRRELFVALGIVAAQVIQSSYQYGSSNNGDNK 360
           YS ICSQILVNQPFPTVEEAYSEIIREEKRRELFVALGI+AAQVIQSSYQYGSSNNGDNK
Sbjct: 301 YSIICSQILVNQPFPTVEEAYSEIIREEKRRELFVALGIMAAQVIQSSYQYGSSNNGDNK 360

Query: 361 NLGIDQEIDRSI 369
           NLGIDQEIDRSI
Sbjct: 361 NLGIDQEIDRSI 372

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BLAST of CsGy1G010300 vs. NCBI nr
Match: XP_011652531.1 (PREDICTED: protein ENL-like [Cucumis sativus] >KGN64485.1 hypothetical protein Csa_1G058680 [Cucumis sativus])

HSP 1 Score: 351.7 bits (901), Expect = 3.1e-93
Identity = 187/220 (85.00%), Postives = 195/220 (88.64%), Query Frame = 0


Query: 149 SPTSGSDCHEKAVKTTAYPNPPASSDPSNDIGHRLLQGLSFEGKDLDDILKGNSIDDLMG 208
           SPTSGSD  +K VKTTA P+ P  SD S+DIG RLLQ LS EGKDLDDILKGN+IDDLMG
Sbjct: 143 SPTSGSDHRQKHVKTTADPHSPGYSDSSHDIGDRLLQRLSSEGKDLDDILKGNTIDDLMG 202

Query: 209 SNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYSSDFAQGY 268
           SNN+KEESS RNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIG YSS+  +G 
Sbjct: 203 SNNRKEESSSRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGIYSSESVEG- 262

Query: 269 SSNGTIAFWSELTERDKVMQFFIGLNDYYSTICSQILVNQPFPTVEEAYSEIIREEKRRE 328
                IAFWSELTERDKV+QFFIGLNDYYS ICSQILVNQPFPTVEEAYSEIIREEKRRE
Sbjct: 263 -----IAFWSELTERDKVIQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKRRE 322

Query: 329 LFVALGIVAAQVIQSSYQYGSSNNGDNKNLGIDQEIDRSI 369
           LFVALG VAAQVIQSSYQ GSSNNGDNKNLGIDQEID SI
Sbjct: 323 LFVALGTVAAQVIQSSYQNGSSNNGDNKNLGIDQEIDTSI 356

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BLAST of CsGy1G010300 vs. NCBI nr
Match: XP_011648413.1 (PREDICTED: early nodulin-20-like [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 6.3e-54
Identity = 184/196 (93.88%), Postives = 185/196 (94.39%), Query Frame = 0


Query: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60
           MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS
Sbjct: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60

Query: 61  ----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNPPASSDPS 180
           XXXX      SSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPN PASSDPS
Sbjct: 121 XXXXPTMPSSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS 180

Query: 181 NDIGHRLLQGLSFEGK 193
           NDIGHRLLQGLSFEG+
Sbjct: 181 NDIGHRLLQGLSFEGQ 196

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BLAST of CsGy1G010300 vs. NCBI nr
Match: XP_022954810.1 (serine/arginine repetitive matrix protein 1-like [Cucurbita moschata])

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-31
Identity = 94/189 (49.74%), Postives = 125/189 (66.14%), Query Frame = 0


Query: 173 SDPSNDIGHRLLQGLSFEGKDLDDI-LKGNSIDDLMGSNNKKEESSPRNVSSLAILQIYQ 232
           SDP  D+ H+L Q LS + KDL +I L  N + + + S  K+EE S +  +S  + QIY+
Sbjct: 188 SDP--DV-HKLHQ-LSLDDKDLANIVLHANLVYESLASETKEEECSSQGNNSSRMFQIYK 247

Query: 233 KIASHRQGNLSVERYFKKLKKLWNDIGTYSSDFAQGYSSNGTIAFWSELTERDKVMQFFI 292
           +IASH QGN S+  Y  KLK LW+++  Y         S G+    SE  ER+KVMQF I
Sbjct: 248 EIASHHQGNSSITSYITKLKALWDELEAY---IDTPKCSCGSTEKQSEQIEREKVMQFLI 307

Query: 293 GLNDYYSTICSQILVNQPFPTVEEAYSEIIREEKRRELFVALGIVAAQVIQSSY--QYGS 352
           GLND YSTIC+QIL  +PFPTVE+A   I+REEKRREL ++L IVAA+VIQ+++  Q G 
Sbjct: 308 GLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLSLEIVAAKVIQNNWLLQNGH 367

Query: 353 SNNGDNKNL 359
           S NGDN+ +
Sbjct: 368 SINGDNEEV 369

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BLAST of CsGy1G010300 vs. NCBI nr
Match: XP_022137024.1 (uncharacterized protein LOC111008588 [Momordica charantia] >XP_022137025.1 uncharacterized protein LOC111008588 [Momordica charantia] >XP_022137026.1 uncharacterized protein LOC111008588 [Momordica charantia])

HSP 1 Score: 144.4 bits (363), Expect = 7.5e-31
Identity = 91/183 (49.73%), Postives = 120/183 (65.57%), Query Frame = 0


Query: 184 LQGLSFEGKDLDD-ILKGNSIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASHRQGNLS 243
           LQ LS +GKDL   IL  NSI + +GS+   EES   N     I QIY+ IASHRQ N S
Sbjct: 248 LQRLSIDGKDLASIILHANSIYESIGSDT-MEESFQSNAP--RIFQIYKDIASHRQENSS 307

Query: 244 VERYFKKLKKLWNDIGTYSSDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDYYSTICS 303
           V  YF KLK LW+++ TYS D  Q   S G +   S   ER+KVMQF +GLN+ YSTIC 
Sbjct: 308 VTSYFTKLKILWDELETYSDDVPQ-CCSCGAMEKLSGHVEREKVMQFLMGLNNSYSTICP 367

Query: 304 QILVNQPFPTVEEAYSEIIREEKRRELFVALGIVAAQVIQSSYQYGSSNNGDNKNLGIDQ 363
           QIL+ QPFPT+E+AYS IIREEKR EL  +L +VAA+V+++ +   +  + +  + GI +
Sbjct: 368 QILLIQPFPTMEKAYSIIIREEKRMELVTSLEMVAAKVMENKWLLQNDQSSNGYDDGIHE 426

Query: 364 EID 366
           E++
Sbjct: 428 EVN 426

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BLAST of CsGy1G010300 vs. TAIR10
Match: AT1G21280.1 (Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 49.7 bits (117), Expect = 4.5e-06
Identity = 29/101 (28.71%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 224 LAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYS--SDFAQGYSSNGTIAFWSELT 283
           L I Q+ +++A+ RQG  SVE YF KL K+W ++  Y+   +   G  +        E  
Sbjct: 125 LKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAR 184

Query: 284 ERDKVMQFFIG--LNDYYSTICSQILVNQPFPTVEEAYSEI 321
           E+++  +F +G  LN  +  + ++I+  +P P++ EA++ +
Sbjct: 185 EKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMV 225

[Close]

BLAST of CsGy1G010300 vs. TrEMBL
Match: tr|A0A0A0LU31|A0A0A0LU31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058670 PE=4 SV=1)

HSP 1 Score: 560.8 bits (1444), Expect = 2.2e-156
Identity = 359/372 (96.51%), Postives = 360/372 (96.77%), Query Frame = 0


Query: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60
           MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS
Sbjct: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60

Query: 61  ----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNPPASSDPS 180
           XXXX      SSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPN PASSDPS
Sbjct: 121 XXXXPTMPSSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS 180

Query: 181 NDIGHRLLQGLSFEGKDLDDILKGNSIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASH 240
           NDIGHRLLQGLSFEGKDLDDILKGNSIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASH
Sbjct: 181 NDIGHRLLQGLSFEGKDLDDILKGNSIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASH 240

Query: 241 RQGNLSVERYFKKLKKLWNDIGTYSSDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDY 300
           RQGNLSVERYFKKLKKLWNDIGTYSSDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDY
Sbjct: 241 RQGNLSVERYFKKLKKLWNDIGTYSSDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDY 300

Query: 301 YSTICSQILVNQPFPTVEEAYSEIIREEKRRELFVALGIVAAQVIQSSYQYGSSNNGDNK 360
           YS ICSQILVNQPFPTVEEAYSEIIREEKRRELFVALGI+AAQVIQSSYQYGSSNNGDNK
Sbjct: 301 YSIICSQILVNQPFPTVEEAYSEIIREEKRRELFVALGIMAAQVIQSSYQYGSSNNGDNK 360

Query: 361 NLGIDQEIDRSI 369
           NLGIDQEIDRSI
Sbjct: 361 NLGIDQEIDRSI 372

[Close]

BLAST of CsGy1G010300 vs. TrEMBL
Match: tr|A0A0A0LRE6|A0A0A0LRE6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058680 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.0e-93
Identity = 187/220 (85.00%), Postives = 195/220 (88.64%), Query Frame = 0


Query: 149 SPTSGSDCHEKAVKTTAYPNPPASSDPSNDIGHRLLQGLSFEGKDLDDILKGNSIDDLMG 208
           SPTSGSD  +K VKTTA P+ P  SD S+DIG RLLQ LS EGKDLDDILKGN+IDDLMG
Sbjct: 143 SPTSGSDHRQKHVKTTADPHSPGYSDSSHDIGDRLLQRLSSEGKDLDDILKGNTIDDLMG 202

Query: 209 SNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYSSDFAQGY 268
           SNN+KEESS RNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIG YSS+  +G 
Sbjct: 203 SNNRKEESSSRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGIYSSESVEG- 262

Query: 269 SSNGTIAFWSELTERDKVMQFFIGLNDYYSTICSQILVNQPFPTVEEAYSEIIREEKRRE 328
                IAFWSELTERDKV+QFFIGLNDYYS ICSQILVNQPFPTVEEAYSEIIREEKRRE
Sbjct: 263 -----IAFWSELTERDKVIQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKRRE 322

Query: 329 LFVALGIVAAQVIQSSYQYGSSNNGDNKNLGIDQEIDRSI 369
           LFVALG VAAQVIQSSYQ GSSNNGDNKNLGIDQEID SI
Sbjct: 323 LFVALGTVAAQVIQSSYQNGSSNNGDNKNLGIDQEIDTSI 356

[Close]

BLAST of CsGy1G010300 vs. TrEMBL
Match: tr|A0A0A0LRX9|A0A0A0LRX9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059720 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-20
Identity = 69/188 (36.70%), Postives = 107/188 (56.91%), Query Frame = 0


Query: 149 SPTSGSDCHEKAVKTTAYPNPPASSDP--SNDIGHRLLQGLSFEGKDLDDILKGN----- 208
           +P  GS  H+ +      P+P  ++D    N + H  +        +++D++  N     
Sbjct: 48  TPKDGSSHHKFSDSPNHSPSPVKTADHLLQNQLHHLSIH-------EVNDVVANNVHQSR 107

Query: 209 SIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYS 268
           SI   + S+   E+ +  + S   +L+IY+ IASHR+GN S++ YF+ LK LWN+    S
Sbjct: 108 SIHKSVSSDTIIEQHNSESNSPTMLLKIYELIASHRKGNTSIKSYFRNLKALWNEAAASS 167

Query: 269 SDF-AQGYSSNGTIAFWSELTERDKVMQFFIGLNDYYSTICSQILVNQPFPTVEEAYSEI 328
            +  +   SSN  I   SE  ER+K+MQF +GLND YS +CSQIL  +P PTV++AYS I
Sbjct: 168 INLNSPQSSSNNAIEERSEFMEREKLMQFLLGLNDSYSLLCSQILAVRPSPTVDQAYSLI 227

[Close]

BLAST of CsGy1G010300 vs. TrEMBL
Match: tr|A0A1S3B205|A0A1S3B205_CUCME (uncharacterized protein LOC103485124 OS=Cucumis melo OX=3656 GN=LOC103485124 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 55/127 (43.31%), Postives = 79/127 (62.20%), Query Frame = 0


Query: 202 SIDDLMGSNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYS 261
           SI D     N  E ++P       + +IY++IA HRQG  S++ Y++ LK+LWN+  + +
Sbjct: 90  SIHDDTNEQNNPESNTP------ILSKIYKEIAFHRQGKTSIKTYYENLKQLWNEAASST 149

Query: 262 SDFAQGYSSNGTIAFWSELTERDKVMQFFIGLNDYYSTICSQILVNQPFPTVEEAYSEII 321
              +   SSN  I    EL ERDK+M F +GL D YS++CSQ L+ +P  TV+EAYS II
Sbjct: 150 CTNSPQSSSNIAIVDHIELMERDKLMLFLLGLKDSYSSLCSQFLL-KPSQTVDEAYSTII 209

Query: 322 REEKRRE 329
           RE+K R+
Sbjct: 210 REKKGRK 209

[Close]

BLAST of CsGy1G010300 vs. TrEMBL
Match: tr|A0A2K3MT28|A0A2K3MT28_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g017068 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.6e-13
Identity = 46/117 (39.32%), Postives = 72/117 (61.54%), Query Frame = 0


Query: 213 KEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYSSDFAQGYSSNG 272
           K++ S +N+   AI QI + +AS  QG +SV  YF K+K LW+++ +Y +       +  
Sbjct: 105 KDQFSQKNIP--AIYQIQKSLASLSQGTMSVSTYFTKIKGLWDELESYRT-----LPTCS 164

Query: 273 TIAFWSELTERDKVMQFFIGLNDYYSTICSQILVNQPFPTVEEAYSEIIREEKRREL 330
            +    E  E D++MQF +GLND YST+ S IL+  P P V +AYS +I+EE +R++
Sbjct: 165 QMKAHDEQREEDRLMQFLMGLNDSYSTVRSNILMMSPLPNVRQAYSLVIQEETQRQM 214

The following BLAST results are available for this feature:

BLAST of CsGy1G010300 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64484.1	3.3e-156	96.51	hypothetical protein Csa_1G058670 [Cucumis sativus]	[more]
XP_011652531.1	3.1e-93	85.00	PREDICTED: protein ENL-like [Cucumis sativus] >KGN64485.1 hypothetical protein C...	[more]
XP_011648413.1	6.3e-54	93.88	PREDICTED: early nodulin-20-like [Cucumis sativus]	[more]
XP_022954810.1	1.5e-31	49.74	serine/arginine repetitive matrix protein 1-like [Cucurbita moschata]	[more]
XP_022137024.1	7.5e-31	49.73	uncharacterized protein LOC111008588 [Momordica charantia] >XP_022137025.1 uncha...	[more]

BLAST of CsGy1G010300 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21280.1	4.5e-06	28.71	Retrotransposon gag protein (InterPro:IPR005162)	[more]

BLAST of CsGy1G010300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G010300 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LU31\|A0A0A0LU31_CUCSA	2.2e-156	96.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058670 PE=4 SV=1	[more]
tr\|A0A0A0LRE6\|A0A0A0LRE6_CUCSA	2.0e-93	85.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058680 PE=4 SV=1	[more]
tr\|A0A0A0LRX9\|A0A0A0LRX9_CUCSA	1.3e-20	36.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G059720 PE=4 SV=1	[more]
tr\|A0A1S3B205\|A0A1S3B205_CUCME	1.2e-16	43.31	uncharacterized protein LOC103485124 OS=Cucumis melo OX=3656 GN=LOC103485124 PE=...	[more]
tr\|A0A2K3MT28\|A0A2K3MT28_TRIPR	4.6e-13	39.32	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g017068 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G010300.1	CsGy1G010300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..78
None	No IPR available	PANTHER	PTHR34222:SF2	SUBFAMILY NOT NAMED	coord: 225..354
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 225..354

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G010300	Cla019355	Watermelon (97103) v1	cgybwmB010
CsGy1G010300	Csa1G058670	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G010300	MELO3C002428	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G010300	MELO3C002435	Melon (DHL92) v3.5.1	cgybmeB034
CsGy1G010300	ClCG03G004440	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G010300	CSPI01G10300	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G010300	CmaCh18G002740	Cucurbita maxima (Rimu)	cgybcmaB093
CsGy1G010300	CmoCh18G002570	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G010300	MELO3C002428.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G010300	CsaV3_1G010350	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G010300	Cla97C03G055550	Watermelon (97103) v2	cgybwmbB032
CsGy1G010300	Bhi08G001474	Wax gourd	cgybwgoB030
CsGy1G010300	Carg06838	Silver-seed gourd	carcgybB0500

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G010300	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G010300	Cucurbita maxima (Rimu)	cgybcmaB074
CsGy1G010300	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G010300	Cucurbita moschata (Rifu)	cgybcmoB068
CsGy1G010300	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G010300	Cucurbita pepo (Zucchini)	cgybcpeB070
CsGy1G010300	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G010300	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G010300	Silver-seed gourd	carcgybB0992
CsGy1G010300	Silver-seed gourd	carcgybB0989