CSPI01G10300 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G10300
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 6455083 .. 6455664 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAAGTTTAACTGAAGGGTTCAAATTTAGAGGAATCTTTGATCCCCATTTTAAATCTCCAGTTAATCGCCGCAAGATTAATTCTTCTCCAAACGGAACCAAGAAGCCTACTGATGCAGAGGTTAAAAATTCTGCAAACAAACATCCAGAAAAAGATCCCAATTTTCCCAGTTCTTCAAAGCCAAAGCCACAAGCTGCAGCAAGGAATTCTAATCCCAACAGCAACTCCGCGCCATCTTCTCCAGCTCCACCTCCGACTCCTATTCCGACTACTCGAAAGACAAAAAGTCAACCCCCCACTCCTTCTCCAGCTCTACCTCCGACTCCGAGTCCGACTCGAAAAACAAAATGTCAACCCACCATGCCTTCTTCTTCTTCAAAGATCAACGTTGTAAGACGTATTTATAATGATAATTCTCCAAAAGCTTCTCCCAAGATTTCGCCCACCTCTGGGTCAGATTGTCATGAGAAAGCTGTCAAAACTACTGCTTATCCTAATTCACCTGCATCTTCTGATCCTTCTAATGATATTGGTCATCGGTTGTTACAAGGCCTTTCTTTTGAAGGTCAGTTTTGA

mRNA sequence

ATGGATGAAAGTTTAACTGAAGGGTTCAAATTTAGAGGAATCTTTGATCCCCATTTTAAATCTCCAGTTAATCGCCGCAAGATTAATTCTTCTCCAAACGGAACCAAGAAGCCTACTGATGCAGAGGTTAAAAATTCTGCAAACAAACATCCAGAAAAAGATCCCAATTTTCCCAGTTCTTCAAAGCCAAAGCCACAAGCTGCAGCAAGGAATTCTAATCCCAACAGCAACTCCGCGCCATCTTCTCCAGCTCCACCTCCGACTCCTATTCCGACTACTCGAAAGACAAAAAGTCAACCCCCCACTCCTTCTCCAGCTCTACCTCCGACTCCGAGTCCGACTCGAAAAACAAAATGTCAACCCACCATGCCTTCTTCTTCTTCAAAGATCAACGTTGTAAGACGTATTTATAATGATAATTCTCCAAAAGCTTCTCCCAAGATTTCGCCCACCTCTGGGTCAGATTGTCATGAGAAAGCTGTCAAAACTACTGCTTATCCTAATTCACCTGCATCTTCTGATCCTTCTAATGATATTGGTCATCGGTTGTTACAAGGCCTTTCTTTTGAAGGTCAGTTTTGA

Coding sequence (CDS)

ATGGATGAAAGTTTAACTGAAGGGTTCAAATTTAGAGGAATCTTTGATCCCCATTTTAAATCTCCAGTTAATCGCCGCAAGATTAATTCTTCTCCAAACGGAACCAAGAAGCCTACTGATGCAGAGGTTAAAAATTCTGCAAACAAACATCCAGAAAAAGATCCCAATTTTCCCAGTTCTTCAAAGCCAAAGCCACAAGCTGCAGCAAGGAATTCTAATCCCAACAGCAACTCCGCGCCATCTTCTCCAGCTCCACCTCCGACTCCTATTCCGACTACTCGAAAGACAAAAAGTCAACCCCCCACTCCTTCTCCAGCTCTACCTCCGACTCCGAGTCCGACTCGAAAAACAAAATGTCAACCCACCATGCCTTCTTCTTCTTCAAAGATCAACGTTGTAAGACGTATTTATAATGATAATTCTCCAAAAGCTTCTCCCAAGATTTCGCCCACCTCTGGGTCAGATTGTCATGAGAAAGCTGTCAAAACTACTGCTTATCCTAATTCACCTGCATCTTCTGATCCTTCTAATGATATTGGTCATCGGTTGTTACAAGGCCTTTCTTTTGAAGGTCAGTTTTGA

Homology

[Close]

BLAST of CSPI01G10300 vs. TrEMBL
Match: A0A0A0LU31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058670 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.8e-95
Identity = 190/196 (96.94%), Postives = 191/196 (97.45%), Query Frame = 1


Query: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60
           MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS
Sbjct: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60

Query: 61  SKPKPQAAARNSNPNSNSAPSSPAPPPTPIPTTRKTKSQPPTPSPALP----PTPSPTRK 120
           SKPKPQAAARNSNPNSNSAPSSPAPPPTPIPTTRKTKSQPPTPSPALP    PTPSPTRK
Sbjct: 61  SKPKPQAAARNSNPNSNSAPSSPAPPPTPIPTTRKTKSQPPTPSPALPPTPSPTPSPTRK 120

Query: 121 TKCQPTMPSSSSKINVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS 180
           TKCQPTMPSSSSK NVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS
Sbjct: 121 TKCQPTMPSSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS 180

Query: 181 NDIGHRLLQGLSFEGQ 193
           NDIGHRLLQGLSFEG+
Sbjct: 181 NDIGHRLLQGLSFEGK 196

[Close]

BLAST of CSPI01G10300 vs. TrEMBL
Match: A0A0A0LRE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058680 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.5e-38
Identity = 113/192 (58.85%), Postives = 129/192 (67.19%), Query Frame = 1


Query: 12  RGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSSSKPKPQAAARN 71
           RGI  P        ++   SP   +KP D E K SA K+P+KDPNFPSSSKPKPQAAA N
Sbjct: 4   RGIMGP--------KRSQFSPKPNRKPIDPEAKKSAKKNPKKDPNFPSSSKPKPQAAATN 63

Query: 72  -------SNPNSNSAPSSPAPPPTPIPTTRKTKSQPPTPS----PALPPTPSPTRKTKCQ 131
                  +NPNS +  S+P PPPTPI +T K KSQPPTPS    P LP   SP R++K Q
Sbjct: 64  PNSNGNKTNPNSETPSSAPPPPPTPI-STPKAKSQPPTPSSDHHPPLPHNLSPPRRSKSQ 123

Query: 132 PTMPSSSSKINVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPSNDIG 191
           P  PSS+SKIN VRRI NDNS KA PK SPTSGSD  +K VKTTA P+SP  SD S+DIG
Sbjct: 124 PATPSSASKINFVRRIDNDNSTKAFPKTSPTSGSDHRQKHVKTTADPHSPGYSDSSHDIG 183

Query: 192 HRLLQGLSFEGQ 193
            RLLQ LS EG+
Sbjct: 184 DRLLQRLSSEGK 186

[Close]

BLAST of CSPI01G10300 vs. NCBI nr
Match: gi|778664840|ref|XP_011648413.1| (PREDICTED: early nodulin-20-like [Cucumis sativus])

HSP 1 Score: 360.5 bits (924), Expect = 1.8e-96
Identity = 192/197 (97.46%), Postives = 192/197 (97.46%), Query Frame = 1


Query: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60
           MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS
Sbjct: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60

Query: 61  SKPKPQAAARNSNPNSNSAPSSPAPPPTPIPTTRKTKSQPPTPSPALP----PTPSPTRK 120
           SKPKPQAAARNSNPNSNSAPSSPAPPPTPIPTTRKTKSQPPTPSPALP    PTPSPTRK
Sbjct: 61  SKPKPQAAARNSNPNSNSAPSSPAPPPTPIPTTRKTKSQPPTPSPALPPTPSPTPSPTRK 120

Query: 121 TKCQPTMPSSSSKINVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS 180
           TKCQPTMPSSSSK NVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS
Sbjct: 121 TKCQPTMPSSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS 180

Query: 181 NDIGHRLLQGLSFEGQF 194
           NDIGHRLLQGLSFEGQF
Sbjct: 181 NDIGHRLLQGLSFEGQF 197

[Close]

BLAST of CSPI01G10300 vs. NCBI nr
Match: gi|700209388|gb|KGN64484.1| (hypothetical protein Csa_1G058670 [Cucumis sativus])

HSP 1 Score: 356.7 bits (914), Expect = 2.6e-95
Identity = 190/196 (96.94%), Postives = 191/196 (97.45%), Query Frame = 1


Query: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60
           MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS
Sbjct: 1   MDESLTEGFKFRGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSS 60

Query: 61  SKPKPQAAARNSNPNSNSAPSSPAPPPTPIPTTRKTKSQPPTPSPALP----PTPSPTRK 120
           SKPKPQAAARNSNPNSNSAPSSPAPPPTPIPTTRKTKSQPPTPSPALP    PTPSPTRK
Sbjct: 61  SKPKPQAAARNSNPNSNSAPSSPAPPPTPIPTTRKTKSQPPTPSPALPPTPSPTPSPTRK 120

Query: 121 TKCQPTMPSSSSKINVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS 180
           TKCQPTMPSSSSK NVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS
Sbjct: 121 TKCQPTMPSSSSKNNVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPS 180

Query: 181 NDIGHRLLQGLSFEGQ 193
           NDIGHRLLQGLSFEG+
Sbjct: 181 NDIGHRLLQGLSFEGK 196

[Close]

BLAST of CSPI01G10300 vs. NCBI nr
Match: gi|778658332|ref|XP_011652531.1| (PREDICTED: protein ENL-like [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 5.0e-38
Identity = 113/192 (58.85%), Postives = 129/192 (67.19%), Query Frame = 1


Query: 12  RGIFDPHFKSPVNRRKINSSPNGTKKPTDAEVKNSANKHPEKDPNFPSSSKPKPQAAARN 71
           RGI  P        ++   SP   +KP D E K SA K+P+KDPNFPSSSKPKPQAAA N
Sbjct: 4   RGIMGP--------KRSQFSPKPNRKPIDPEAKKSAKKNPKKDPNFPSSSKPKPQAAATN 63

Query: 72  -------SNPNSNSAPSSPAPPPTPIPTTRKTKSQPPTPS----PALPPTPSPTRKTKCQ 131
                  +NPNS +  S+P PPPTPI +T K KSQPPTPS    P LP   SP R++K Q
Sbjct: 64  PNSNGNKTNPNSETPSSAPPPPPTPI-STPKAKSQPPTPSSDHHPPLPHNLSPPRRSKSQ 123

Query: 132 PTMPSSSSKINVVRRIYNDNSPKASPKISPTSGSDCHEKAVKTTAYPNSPASSDPSNDIG 191
           P  PSS+SKIN VRRI NDNS KA PK SPTSGSD  +K VKTTA P+SP  SD S+DIG
Sbjct: 124 PATPSSASKINFVRRIDNDNSTKAFPKTSPTSGSDHRQKHVKTTADPHSPGYSDSSHDIG 183

Query: 192 HRLLQGLSFEGQ 193
            RLLQ LS EG+
Sbjct: 184 DRLLQRLSSEGK 186

The following BLAST results are available for this feature:

BLAST of CSPI01G10300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G10300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU31_CUCSA	1.8e-95	96.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058670 PE=4 SV=1	[more]
A0A0A0LRE6_CUCSA	3.5e-38	58.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058680 PE=4 SV=1	[more]

BLAST of CSPI01G10300 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G10300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664840\|ref\|XP_011648413.1\|	1.8e-96	97.46	PREDICTED: early nodulin-20-like [Cucumis sativus]	[more]
gi\|700209388\|gb\|KGN64484.1\|	2.6e-95	96.94	hypothetical protein Csa_1G058670 [Cucumis sativus]	[more]
gi\|778658332\|ref\|XP_011652531.1\|	5.0e-38	58.85	PREDICTED: protein ENL-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G10300.1	CSPI01G10300.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G10300	Csa1G058670	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G10300	MELO3C002428	Melon (DHL92) v3.5.1	cpimeB023
CSPI01G10300	MELO3C002428.2	Melon (DHL92) v3.6.1	cpimedB023
CSPI01G10300	CsaV3_1G010350	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G10300	CsGy1G010300	Cucumber (Gy14) v2	cgybcpiB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G10300	Wax gourd	cpiwgoB033
CSPI01G10300	Wax gourd	cpiwgoB047
CSPI01G10300	Cucurbita pepo (Zucchini)	cpecpiB025
CSPI01G10300	Cucumber (Gy14) v1	cgycpiB192
CSPI01G10300	Cucurbita maxima (Rimu)	cmacpiB219
CSPI01G10300	Cucurbita maxima (Rimu)	cmacpiB401
CSPI01G10300	Cucurbita moschata (Rifu)	cmocpiB205
CSPI01G10300	Cucurbita moschata (Rifu)	cmocpiB383
CSPI01G10300	Cucumber (Chinese Long) v2	cpicuB013
CSPI01G10300	Melon (DHL92) v3.5.1	cpimeB024
CSPI01G10300	Melon (DHL92) v3.5.1	cpimeB036
CSPI01G10300	Watermelon (Charleston Gray)	cpiwcgB038
CSPI01G10300	Watermelon (97103) v1	cpiwmB010
CSPI01G10300	Cucurbita pepo (Zucchini)	cpecpiB506
CSPI01G10300	Cucurbita pepo (Zucchini)	cpecpiB517
CSPI01G10300	Bottle gourd (USVL1VR-Ls)	cpilsiB021
CSPI01G10300	Silver-seed gourd	carcpiB0531
CSPI01G10300	Silver-seed gourd	carcpiB1041
CSPI01G10300	Silver-seed gourd	carcpiB1044
CSPI01G10300	Cucumber (Chinese Long) v3	cpicucB009
CSPI01G10300	Watermelon (97103) v2	cpiwmbB032