Lsi02G005610 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G005610
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8
Location	chr02 : 4932946 .. 4933749 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGCAATAAGAGGGCTTATGAGTCCCCGAAGATCCTCACGGTCACGCGCAGGGGGAAAGAAGAAGACAGCGCCGCCCAATCCGGAGGAGCAACAAAGTTGGAGAAGGACAGACACCCAAATAGCCACCAACTCAAAACGAAGAAACAACCTCGGACCTCCAAATTCTTCAGGTATCCACTTACCAAAATCCACTTTAAAGATCGCCTCCTCACGCCGACGAACAGAACAACCCCCAAATCCCAACACTAAAATCGCCACAAAAAATTCATTTGGGCGTTCAAACAGCAATTTAAAAGGTGGGTTTGGCTTTAGTTCGTCAAGATCCCTTGGTGGGAGTCGTAAATATTTTGATTCTCCAAATGCTTCTCCCAAGCCATACCGGAGCTTAGGTACAAAAGAAGAATTATTTGGTTCTGAAAGCAAGGCTCAAAGAATATTATTTAAAATTTACATGGAAATTGCATCTCATCGTCAAGGAAACTCATCTATTACATCTTACTTCACAAAGCTCAAGGTATTATGGGATCAACTTGCAAAAACCTATACTGACAATTTGCCTCAATATTCATCAGATGCAATTGAGATGCTGAGTGAACATATGGAAAGAGAAAAGGTAATACAATTTCTTGTTGGACTAAATGATTCTTATTCCTCCATTTGTTCTAAAATACTTCTTAGGAGGCCATTTCCATCGGTGGACATAGCTTTTTCTGTAATCATTCGAAAAGAAAACCGTAGGAAATTGGTAATTTCGTCAGAAGAAGTTGTTGAGAAAAAAATAAGTGTGCAAAACGATTAG

mRNA sequence

ATGACGGCAATAAGAGGGCTTATGAGTCCCCGAAGATCCTCACGGTCACGCGCAGGGGGAAAGAAGAAGACAGCGCCGCCCAATCCGGAGGAGCAACAAAGTTGGAGAAGGACAGACACCCAAATAGCCACCAACTCAAAACGAAGAAACAACCTCGGACCTCCAAATTCTTCAGGTATCCACTTACCAAAATCCACTTTAAAGATCGCCTCCTCACGCCGACGAACAGAACAACCCCCAAATCCCAACACTAAAATCGCCACAAAAAATTCATTTGGGCGTTCAAACAGCAATTTAAAAGGTGGGTTTGGCTTTAGTTCGTCAAGATCCCTTGGTGGGAGTCGTAAATATTTTGATTCTCCAAATGCTTCTCCCAAGCCATACCGGAGCTTAGGTACAAAAGAAGAATTATTTGGTTCTGAAAGCAAGGCTCAAAGAATATTATTTAAAATTTACATGGAAATTGCATCTCATCGTCAAGGAAACTCATCTATTACATCTTACTTCACAAAGCTCAAGGTATTATGGGATCAACTTGCAAAAACCTATACTGACAATTTGCCTCAATATTCATCAGATGCAATTGAGATGCTGAGTGAACATATGGAAAGAGAAAAGGTAATACAATTTCTTGTTGGACTAAATGATTCTTATTCCTCCATTTGTTCTAAAATACTTCTTAGGAGGCCATTTCCATCGGTGGACATAGCTTTTTCTGTAATCATTCGAAAAGAAAACCGTAGGAAATTGGTAATTTCGTCAGAAGAAGTTGTTGAGAAAAAAATAAGTGTGCAAAACGATTAG

Coding sequence (CDS)

ATGACGGCAATAAGAGGGCTTATGAGTCCCCGAAGATCCTCACGGTCACGCGCAGGGGGAAAGAAGAAGACAGCGCCGCCCAATCCGGAGGAGCAACAAAGTTGGAGAAGGACAGACACCCAAATAGCCACCAACTCAAAACGAAGAAACAACCTCGGACCTCCAAATTCTTCAGGTATCCACTTACCAAAATCCACTTTAAAGATCGCCTCCTCACGCCGACGAACAGAACAACCCCCAAATCCCAACACTAAAATCGCCACAAAAAATTCATTTGGGCGTTCAAACAGCAATTTAAAAGGTGGGTTTGGCTTTAGTTCGTCAAGATCCCTTGGTGGGAGTCGTAAATATTTTGATTCTCCAAATGCTTCTCCCAAGCCATACCGGAGCTTAGGTACAAAAGAAGAATTATTTGGTTCTGAAAGCAAGGCTCAAAGAATATTATTTAAAATTTACATGGAAATTGCATCTCATCGTCAAGGAAACTCATCTATTACATCTTACTTCACAAAGCTCAAGGTATTATGGGATCAACTTGCAAAAACCTATACTGACAATTTGCCTCAATATTCATCAGATGCAATTGAGATGCTGAGTGAACATATGGAAAGAGAAAAGGTAATACAATTTCTTGTTGGACTAAATGATTCTTATTCCTCCATTTGTTCTAAAATACTTCTTAGGAGGCCATTTCCATCGGTGGACATAGCTTTTTCTGTAATCATTCGAAAAGAAAACCGTAGGAAATTGGTAATTTCGTCAGAAGAAGTTGTTGAGAAAAAAATAAGTGTGCAAAACGATTAG

Protein sequence

MTAIRGLMSPRRSSRSRAGGKKKTAPPNPEEQQSWRRTDTQIATNSKRRNNLGPPNSSGIHLPKSTLKIASSRRRTEQPPNPNTKIATKNSFGRSNSNLKGGFGFSSSRSLGGSRKYFDSPNASPKPYRSLGTKEELFGSESKAQRILFKIYMEIASHRQGNSSITSYFTKLKVLWDQLAKTYTDNLPQYSSDAIEMLSEHMEREKVIQFLVGLNDSYSSICSKILLRRPFPSVDIAFSVIIRKENRRKLVISSEEVVEKKISVQND

Homology

[Close]

BLAST of Lsi02G005610 vs. TrEMBL
Match: A0A0A0LRX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059720 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.2e-22
Identity = 64/116 (55.17%), Postives = 84/116 (72.41%), Query Frame = 1


Query: 136 ELFGSESKAQRILFKIYMEIASHRQGNSSITSYFTKLKVLWDQLAKTYTD-NLPQYSSD- 195
           E   SES +  +L KIY  IASHR+GN+SI SYF  LK LW++ A +  + N PQ SS+ 
Sbjct: 113 EQHNSESNSPTMLLKIYELIASHRKGNTSIKSYFRNLKALWNEAAASSINLNSPQSSSNN 172

Query: 196 AIEMLSEHMEREKVIQFLVGLNDSYSSICSKILLRRPFPSVDIAFSVIIRKENRRK 250
           AIE  SE MEREK++QFL+GLNDSYS +CS+IL  RP P+VD A+S+I+ ++  RK
Sbjct: 173 AIEERSEFMEREKLMQFLLGLNDSYSLLCSQILAVRPSPTVDQAYSLIVGEQKTRK 228

[Close]

BLAST of Lsi02G005610 vs. TrEMBL
Match: A0A0A0LU31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058670 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-20
Identity = 59/129 (45.74%), Postives = 84/129 (65.12%), Query Frame = 1


Query: 135 EELFGSESKAQR---------ILFKIYMEIASHRQGNSSITSYFTKLKVLWDQLAKTYTD 194
           ++L GS +K +           + +IY +IASHRQGN S+  YF KLK LW+ +    +D
Sbjct: 208 DDLMGSNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYSSD 267

Query: 195 NLPQYSSDA-IEMLSEHMEREKVIQFLVGLNDSYSSICSKILLRRPFPSVDIAFSVIIRK 254
               YSS+  I   SE  ER+KV+QF +GLND YS ICS+IL+ +PFP+V+ A+S IIR+
Sbjct: 268 FAQGYSSNGTIAFWSELTERDKVMQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIRE 327

[Close]

BLAST of Lsi02G005610 vs. TrEMBL
Match: A0A0A0LRE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058680 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-19
Identity = 62/138 (44.93%), Postives = 89/138 (64.49%), Query Frame = 1


Query: 134 KEELFGSESKAQRILFKIYMEIASHRQGNSSITSYFTKLKVLWDQLAKTYTDNLPQYSSD 193
           ++E   S + +   + +IY +IASHRQGN S+  YF KLK LW+ +          YSS+
Sbjct: 206 RKEESSSRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGI--------YSSE 265

Query: 194 AIEML---SEHMEREKVIQFLVGLNDSYSSICSKILLRRPFPSVDIAFSVIIRKENRRKL 253
           ++E +   SE  ER+KVIQF +GLND YS ICS+IL+ +PFP+V+ A+S IIR+E RR+L
Sbjct: 266 SVEGIAFWSELTERDKVIQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKRREL 325

Query: 254 VISSEEVVEKKI--SVQN 267
            ++   V  + I  S QN
Sbjct: 326 FVALGTVAAQVIQSSYQN 335

[Close]

BLAST of Lsi02G005610 vs. TrEMBL
Match: A5BCQ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025518 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.1e-13
Identity = 40/107 (37.38%), Postives = 70/107 (65.42%), Query Frame = 1


Query: 148 LFKIYMEIASHRQGNSSITSYFTKLKVLWDQLAKTYTDNLPQYSSDAIEMLSEHMEREKV 207
           +++I  +I  HRQG  SI+ Y+TKLK  WD+L+  +   +   S   +E L E  E+E+V
Sbjct: 163 IYQIKRDIVEHRQGQQSISVYYTKLKAFWDELSSYH--EVLSCSCGGLEKLKERDEKERV 222

Query: 208 IQFLVGLNDSYSSICSKILLRRPFPSVDIAFSVIIRKENRRKLVISS 255
           +QFL+GLNDSY++I  +ILL  P P     +S+++++E + ++ +++
Sbjct: 223 MQFLMGLNDSYAAIRGQILLMHPLPDTRRVYSLVLQQEKQVEVSLNN 267

[Close]

BLAST of Lsi02G005610 vs. TrEMBL
Match: A5BC87_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006992 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.3e-13
Identity = 40/100 (40.00%), Postives = 66/100 (66.00%), Query Frame = 1


Query: 148 LFKIYMEIASHRQGNSSITSYFTKLKVLWDQLAKTYTDNLPQYSSDAIEMLSEHMEREKV 207
           +++I  +I  HRQG  SI+ Y+TKLK  WD+L+  +   +   S   +E L E  E+E+V
Sbjct: 125 IYQIKRDIVEHRQGQQSISVYYTKLKAFWDELSSYH--EVLSCSCGGLEKLKEMDEKERV 184

Query: 208 IQFLVGLNDSYSSICSKILLRRPFPSVDIAFSVIIRKENR 248
           +QFL+GLNDSY++I  +ILL +P P     +S+++++E +
Sbjct: 185 MQFLMGLNDSYAAIRGQILLMQPLPDTRRVYSLVLQQEKQ 222

[Close]

BLAST of Lsi02G005610 vs. NCBI nr
Match: gi|449474397|ref|XP_004154160.1| (PREDICTED: uncharacterized protein LOC101211799 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 5.6e-24
Identity = 68/126 (53.97%), Postives = 89/126 (70.63%), Query Frame = 1


Query: 135 EELFGSESKAQRILFKIYMEIASHRQGNSSITSYFTKLKVLWDQLA-KTYTDNLPQYSSD 194
           E+   SES A  +LFKIY  IASHRQGN+SI SYF  LK LWD+ A  +   N PQ SS+
Sbjct: 136 EQQHNSESNAATMLFKIYGVIASHRQGNTSIKSYFKNLKALWDEAAASSIHTNSPQSSSN 195

Query: 195 AIEM-LSEHMEREKVIQFLVGLNDSYSSICSKILLRRPFPSVDIAFSVIIRKENRRKLVI 254
              +  S  MEREK++QFL+GLNDSYSS+CS+ILL RP P+VD A+S+II +E  RK  +
Sbjct: 196 NTTVEQSGLMEREKLMQFLLGLNDSYSSLCSQILLERPSPTVDQAYSLIILEEKTRKSKM 255

Query: 255 SSEEVV 259
           + + ++
Sbjct: 256 AKKNIM 261

[Close]

BLAST of Lsi02G005610 vs. NCBI nr
Match: gi|778658349|ref|XP_011652556.1| (PREDICTED: uncharacterized protein LOC105435030 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 3.1e-22
Identity = 64/116 (55.17%), Postives = 84/116 (72.41%), Query Frame = 1


Query: 136 ELFGSESKAQRILFKIYMEIASHRQGNSSITSYFTKLKVLWDQLAKTYTD-NLPQYSSD- 195
           E   SES +  +L KIY  IASHR+GN+SI SYF  LK LW++ A +  + N PQ SS+ 
Sbjct: 130 EQHNSESNSPTMLLKIYELIASHRKGNTSIKSYFRNLKALWNEAAASSINLNSPQSSSNN 189

Query: 196 AIEMLSEHMEREKVIQFLVGLNDSYSSICSKILLRRPFPSVDIAFSVIIRKENRRK 250
           AIE  SE MEREK++QFL+GLNDSYS +CS+IL  RP P+VD A+S+I+ ++  RK
Sbjct: 190 AIEERSEFMEREKLMQFLLGLNDSYSLLCSQILAVRPSPTVDQAYSLIVGEQKTRK 245

[Close]

BLAST of Lsi02G005610 vs. NCBI nr
Match: gi|700209397|gb|KGN64493.1| (hypothetical protein Csa_1G059720 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 3.1e-22
Identity = 64/116 (55.17%), Postives = 84/116 (72.41%), Query Frame = 1


Query: 136 ELFGSESKAQRILFKIYMEIASHRQGNSSITSYFTKLKVLWDQLAKTYTD-NLPQYSSD- 195
           E   SES +  +L KIY  IASHR+GN+SI SYF  LK LW++ A +  + N PQ SS+ 
Sbjct: 113 EQHNSESNSPTMLLKIYELIASHRKGNTSIKSYFRNLKALWNEAAASSINLNSPQSSSNN 172

Query: 196 AIEMLSEHMEREKVIQFLVGLNDSYSSICSKILLRRPFPSVDIAFSVIIRKENRRK 250
           AIE  SE MEREK++QFL+GLNDSYS +CS+IL  RP P+VD A+S+I+ ++  RK
Sbjct: 173 AIEERSEFMEREKLMQFLLGLNDSYSLLCSQILAVRPSPTVDQAYSLIVGEQKTRK 228

[Close]

BLAST of Lsi02G005610 vs. NCBI nr
Match: gi|700209388|gb|KGN64484.1| (hypothetical protein Csa_1G058670 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 59/129 (45.74%), Postives = 84/129 (65.12%), Query Frame = 1


Query: 135 EELFGSESKAQR---------ILFKIYMEIASHRQGNSSITSYFTKLKVLWDQLAKTYTD 194
           ++L GS +K +           + +IY +IASHRQGN S+  YF KLK LW+ +    +D
Sbjct: 208 DDLMGSNNKKEESSPRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGTYSSD 267

Query: 195 NLPQYSSDA-IEMLSEHMEREKVIQFLVGLNDSYSSICSKILLRRPFPSVDIAFSVIIRK 254
               YSS+  I   SE  ER+KV+QF +GLND YS ICS+IL+ +PFP+V+ A+S IIR+
Sbjct: 268 FAQGYSSNGTIAFWSELTERDKVMQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIRE 327

[Close]

BLAST of Lsi02G005610 vs. NCBI nr
Match: gi|778658332|ref|XP_011652531.1| (PREDICTED: protein ENL-like [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 2.4e-19
Identity = 62/138 (44.93%), Postives = 89/138 (64.49%), Query Frame = 1


Query: 134 KEELFGSESKAQRILFKIYMEIASHRQGNSSITSYFTKLKVLWDQLAKTYTDNLPQYSSD 193
           ++E   S + +   + +IY +IASHRQGN S+  YF KLK LW+ +          YSS+
Sbjct: 206 RKEESSSRNVSSLAILQIYQKIASHRQGNLSVERYFKKLKKLWNDIGI--------YSSE 265

Query: 194 AIEML---SEHMEREKVIQFLVGLNDSYSSICSKILLRRPFPSVDIAFSVIIRKENRRKL 253
           ++E +   SE  ER+KVIQF +GLND YS ICS+IL+ +PFP+V+ A+S IIR+E RR+L
Sbjct: 266 SVEGIAFWSELTERDKVIQFFIGLNDYYSIICSQILVNQPFPTVEEAYSEIIREEKRREL 325

Query: 254 VISSEEVVEKKI--SVQN 267
            ++   V  + I  S QN
Sbjct: 326 FVALGTVAAQVIQSSYQN 335

The following BLAST results are available for this feature:

BLAST of Lsi02G005610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi02G005610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRX9_CUCSA	2.2e-22	55.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059720 PE=4 SV=1	[more]
A0A0A0LU31_CUCSA	1.2e-20	45.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058670 PE=4 SV=1	[more]
A0A0A0LRE6_CUCSA	1.7e-19	44.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058680 PE=4 SV=1	[more]
A5BCQ9_VITVI	4.1e-13	37.38	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025518 PE=4 SV=1	[more]
A5BC87_VITVI	5.3e-13	40.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006992 PE=4 SV=1	[more]

BLAST of Lsi02G005610 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi02G005610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449474397\|ref\|XP_004154160.1\|	5.6e-24	53.97	PREDICTED: uncharacterized protein LOC101211799 [Cucumis sativus]	[more]
gi\|778658349\|ref\|XP_011652556.1\|	3.1e-22	55.17	PREDICTED: uncharacterized protein LOC105435030 [Cucumis sativus]	[more]
gi\|700209397\|gb\|KGN64493.1\|	3.1e-22	55.17	hypothetical protein Csa_1G059720 [Cucumis sativus]	[more]
gi\|700209388\|gb\|KGN64484.1\|	1.7e-20	45.74	hypothetical protein Csa_1G058670 [Cucumis sativus]	[more]
gi\|778658332\|ref\|XP_011652531.1\|	2.4e-19	44.93	PREDICTED: protein ENL-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G005610.1	Lsi02G005610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 145..253 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G005610	Csa1G059720	Cucumber (Chinese Long) v2	culsiB040
Lsi02G005610	CSPI01G10370	Wild cucumber (PI 183967)	cpilsiB030
Lsi02G005610	Cucsa.085580	Cucumber (Gy14) v1	cgylsiB094
Lsi02G005610	MELO3C002435	Melon (DHL92) v3.5.1	lsimeB178
Lsi02G005610	MELO3C002435.2	Melon (DHL92) v3.6.1	lsimedB187
Lsi02G005610	CsaV3_1G010350	Cucumber (Chinese Long) v3	cuclsiB029

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G005610	Watermelon (97103) v2	lsiwmbB176
Lsi02G005610	Wax gourd	lsiwgoB243
Lsi02G005610	Cucumber (Gy14) v1	cgylsiB211
Lsi02G005610	Cucurbita maxima (Rimu)	cmalsiB202
Lsi02G005610	Cucurbita maxima (Rimu)	cmalsiB373
Lsi02G005610	Cucurbita moschata (Rifu)	cmolsiB192
Lsi02G005610	Cucurbita moschata (Rifu)	cmolsiB356
Lsi02G005610	Cucurbita pepo (Zucchini)	cpelsiB026
Lsi02G005610	Cucurbita pepo (Zucchini)	cpelsiB423
Lsi02G005610	Wild cucumber (PI 183967)	cpilsiB021
Lsi02G005610	Cucumber (Chinese Long) v2	culsiB022
Lsi02G005610	Melon (DHL92) v3.5.1	lsimeB179
Lsi02G005610	Watermelon (Charleston Gray)	lsiwcgB184
Lsi02G005610	Watermelon (97103) v1	lsiwmB184
Lsi02G005610	Cucumber (Gy14) v2	cgyblsiB018
Lsi02G005610	Melon (DHL92) v3.6.1	lsimedB189
Lsi02G005610	Silver-seed gourd	carlsiB447
Lsi02G005610	Silver-seed gourd	carlsiB918
Lsi02G005610	Cucumber (Chinese Long) v3	cuclsiB022
Lsi02G005610	Cucumber (Chinese Long) v3	cuclsiB045