CsaV3_1G009550 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G009550
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	WD repeat-containing protein 18
Location	chr1 : 5921925 .. 5924721 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAATGGGCAATGGCGGCGAAAGTATGGCGTTGGCTGTTTGCAGCGATAGAAACATGGGATTAGGGATTACTATTTGGGATGTGAAAACAGGCCAAACTCTCCTTCACATTCCGACTTGCGCTTCGCCTCCCTACGGCTTCATTTGCTTGAGAAACGAGTTCTTTGTTGCTTCTCAGACTCGTAAGGAAGGGTCCGTTGGTGGTGGATCCATTTTCATTTGGTCACTCAACAAGGTATTCTACTACGGATTAATTTGCTTGAAGAGCCAGATTAATCTTTTTACTTTCACTTTCCTTCAGATTCTAACCTTGTTCGAATAATATATCATGGACGACTTGATTCTCAACACATATACGAGTTAATGATTCTTGAACTTGAAGGGAACTTTTTGCTATTCTAGCTCCGTGTTCAAGCTCGGCGGAATCTTTGTCATAATCCATCAACTTAACTTACGTTTAACATGTATCAGAATAGGACTGTGACCTATAGATTTTCAAGTTCACAAGTGAGACATTAGGTTGATTTTACAATATTTAGCCATCATAATTGTGTCTTTCAGCCTCTGCCGCCTGTTACGAGCTATACATTAGAGACCATTGGACCACTTGCCTCAACAAAGGATGGTGTATATCTTGCAGGTGGAACTCATTCAGGAAATATTCATCTTTGGGAGGTCTGTAATTCTCTGCCATTCTCATATTTTACATTCAGCAAAGCAATTTTGTATTTTACTTTAGTTTCTGTATGCATATACATATATGTTTGTATTTATGCACGTGAGTATGCGCTTATGTACATACACTTGCTGAAGAACTTTAAGTTCTCTTTTCCCTATTTTCTCTTGAGTCTCATTTATTTGTAGGTTGGTAGTGGGGAACTGCTCAAGCTTTGGAGTGGTCATCATAAACCTGTAAAGTGTGTCCTATTTTCTTGGGACGATTCATTTCTCATTACTGGTTCATCTGACGGAATGATTTGTGTCTGGTCCATGATTAGGTAAATGACTCTTGAGTCTTCACAATGCGTTTATTGAACCGCTTTGATGAAATCATTTGAGATAGCCTTTGGTTTTTGTTTCATGATTTTCATATCAATCTTGATGCAAGTTTGTTGGATGTGGAACTTGTGGGAAACTCACAGCCAATAGTGTATTGTCTCATGGAACATAATTCTTCTTTAACTGGTCTACTCACCATGTCTGGCTGCTCGATGTCGATAATCATTTCAAGCTCCCTCGATGGCAGTTTAAAGGTTGCTAACAGTAACAATGTATCTATTATTTGGTGTTGAGTTCTAATAAATTTATGACTTGATTAAACATTTTGCGTTTGCAGTTTTGGGACTTAATGTCAGGAATGATCAGGGGAACTCAAGCTCATATAGAGGGGATCACCGCAATTGTTCTTCATCCAACTGAGCAAGTTCTGTTCTCTGGCACTGTTGACGGGCAAATTTTTGCTAGCAGGCTTGAATTTGGATTTGATAACTGCATTACCATTAGAGAAAATCAAATACTTGCACCAAAAGGACACAAGTAATATATGGTACTTGAAAGTTCTCTGTAGTAGTTGCAATATGACTTTCCCTTTTTGTTATCTTGCATTGTTCTATATTTTTTTATGACTTTTCAAGCAAGGAAAATGTGTTGTCCATTGAAATCATCTCCCTCTAAACTTCATCAGCAGAACAACTTTACTAGTTATGACCATTTTGCAACTTCTTGTTTCTTTCCCCTGACCAATAATTAATATACATGTTGCAAGCCCATAGTAAGTTTATGTTCGTGTTTCCACCATTAATGCAGAGGAGCTATTACTGCTCTGGCTTTTAGTCAGATGTATCTAATTTCTGCATCCGAGGATTGTACTGTTTGCATAAGGGACATCAGCAGTCAGAGGATCATACAAAAGCTTGACCATAAAAAAGGTAATAACTTAATAAATGAACTGCTGTCTGATTAGGATCCTTCTTGCCTTTGAAGATTTGAAAACCATATTGGGTTGTACCTGTATAGTTCTGGAAACTTGATCGATGATGGAAATGATTGTTTCAAGAGAGGTTAATTTTGTTTTCTTCATCATTGCCATACGACAGTGAAGCATAGACAAACAATTTTCCTCTTCAATAATTTTATTTGGAATATCTGAACATGCATCGTATTGTTGTTTTTTGGCCGTTAACAGGGAGAATAACCAATTTGGTAGCAATTCCGCGGTCGTCCTTAATCTCTACGTCAAATCGTAAGAGAGTCTCGAATCAATCCTCCATGTCCTCACTCGACAAGTATCCTCAGCCTGCCAACTTGATGAAGAGCACGATTCCTCTCTTTTCATCCATCCAACCGCTTGGGGAGAATCTGAATTCCATCAGATTCACAAGTACCAGCTCATTGAATCAACAAATACTTGATATGAAGGTCAATCTTTCCTTAAATCTTTCTACATTGTAGCCTCAATAATGGCTGCCAATAGTAATGCTAGTTAAGTCAGTTGGATTATAAAACACCGACGATATTATCAATATATTCATAATACTTTTCCATTGTATTCAGACAGAAGGGACATCAGCAGCAATACAGATGAAAGTAGAAACAAGCTTAGAAAGGCGAATGTGGGCGTCCAGAATGACAAAGGAAGTGATGGACATGAATAACCATCTTCAATCAAGGTTACTAGACATGATGCGGATTCGATTGTTCGAGCCTGCAAAAATTAGCTCGTCCTCAAAGAAACAAAAAGATGAAAGAGATCGAGTTGCAAAGAAGAGGGAGAAGCGTACATTGTCATTCCATTAA

mRNA sequence

ATGGGCAATGGCGGCGAAAGTATGGCGTTGGCTGTTTGCAGCGATAGAAACATGGGATTAGGGATTACTATTTGGGATGTGAAAACAGGCCAAACTCTCCTTCACATTCCGACTTGCGCTTCGCCTCCCTACGGCTTCATTTGCTTGAGAAACGAGTTCTTTGTTGCTTCTCAGACTCGTAAGGAAGGGTCCGTTGGTGGTGGATCCATTTTCATTTGGTCACTCAACAAGCCTCTGCCGCCTGTTACGAGCTATACATTAGAGACCATTGGACCACTTGCCTCAACAAAGGATGGTGTATATCTTGCAGGTGGAACTCATTCAGGAAATATTCATCTTTGGGAGGTTGGTAGTGGGGAACTGCTCAAGCTTTGGAGTGGTCATCATAAACCTGTAAAGTGTGTCCTATTTTCTTGGGACGATTCATTTCTCATTACTGGTTCATCTGACGGAATGATTTGTGTCTGGTCCATGATTAGTTTGTTGGATGTGGAACTTGTGGGAAACTCACAGCCAATAGTGTATTGTCTCATGGAACATAATTCTTCTTTAACTGGTCTACTCACCATGTCTGGCTGCTCGATGTCGATAATCATTTCAAGCTCCCTCGATGGCAGTTTAAAGTTTTGGGACTTAATGTCAGGAATGATCAGGGGAACTCAAGCTCATATAGAGGGGATCACCGCAATTGTTCTTCATCCAACTGAGCAAGTTCTGTTCTCTGGCACTGTTGACGGGCAAATTTTTGCTAGCAGGCTTGAATTTGGATTTGATAACTGCATTACCATTAGAGAAAATCAAATACTTGCACCAAAAGGACACAAAGGAGCTATTACTGCTCTGGCTTTTAGTCAGATGTATCTAATTTCTGCATCCGAGGATTGTACTGTTTGCATAAGGGACATCAGCAGTCAGAGGATCATACAAAAGCTTGACCATAAAAAAGGGAGAATAACCAATTTGGTAGCAATTCCGCGGTCGTCCTTAATCTCTACGTCAAATCGTAAGAGAGTCTCGAATCAATCCTCCATGTCCTCACTCGACAAGTATCCTCAGCCTGCCAACTTGATGAAGAGCACGATTCCTCTCTTTTCATCCATCCAACCGCTTGGGGAGAATCTGAATTCCATCAGATTCACAAGTACCAGCTCATTGAATCAACAAATACTTGATATGAAGACAGAAGGGACATCAGCAGCAATACAGATGAAAGTAGAAACAAGCTTAGAAAGGCGAATGTGGGCGTCCAGAATGACAAAGGAAGTGATGGACATGAATAACCATCTTCAATCAAGGTTACTAGACATGATGCGGATTCGATTGTTCGAGCCTGCAAAAATTAGCTCGTCCTCAAAGAAACAAAAAGATGAAAGAGATCGAGTTGCAAAGAAGAGGGAGAAGCGTACATTGTCATTCCATTAA

Coding sequence (CDS)

ATGGGCAATGGCGGCGAAAGTATGGCGTTGGCTGTTTGCAGCGATAGAAACATGGGATTAGGGATTACTATTTGGGATGTGAAAACAGGCCAAACTCTCCTTCACATTCCGACTTGCGCTTCGCCTCCCTACGGCTTCATTTGCTTGAGAAACGAGTTCTTTGTTGCTTCTCAGACTCGTAAGGAAGGGTCCGTTGGTGGTGGATCCATTTTCATTTGGTCACTCAACAAGCCTCTGCCGCCTGTTACGAGCTATACATTAGAGACCATTGGACCACTTGCCTCAACAAAGGATGGTGTATATCTTGCAGGTGGAACTCATTCAGGAAATATTCATCTTTGGGAGGTTGGTAGTGGGGAACTGCTCAAGCTTTGGAGTGGTCATCATAAACCTGTAAAGTGTGTCCTATTTTCTTGGGACGATTCATTTCTCATTACTGGTTCATCTGACGGAATGATTTGTGTCTGGTCCATGATTAGTTTGTTGGATGTGGAACTTGTGGGAAACTCACAGCCAATAGTGTATTGTCTCATGGAACATAATTCTTCTTTAACTGGTCTACTCACCATGTCTGGCTGCTCGATGTCGATAATCATTTCAAGCTCCCTCGATGGCAGTTTAAAGTTTTGGGACTTAATGTCAGGAATGATCAGGGGAACTCAAGCTCATATAGAGGGGATCACCGCAATTGTTCTTCATCCAACTGAGCAAGTTCTGTTCTCTGGCACTGTTGACGGGCAAATTTTTGCTAGCAGGCTTGAATTTGGATTTGATAACTGCATTACCATTAGAGAAAATCAAATACTTGCACCAAAAGGACACAAAGGAGCTATTACTGCTCTGGCTTTTAGTCAGATGTATCTAATTTCTGCATCCGAGGATTGTACTGTTTGCATAAGGGACATCAGCAGTCAGAGGATCATACAAAAGCTTGACCATAAAAAAGGGAGAATAACCAATTTGGTAGCAATTCCGCGGTCGTCCTTAATCTCTACGTCAAATCGTAAGAGAGTCTCGAATCAATCCTCCATGTCCTCACTCGACAAGTATCCTCAGCCTGCCAACTTGATGAAGAGCACGATTCCTCTCTTTTCATCCATCCAACCGCTTGGGGAGAATCTGAATTCCATCAGATTCACAAGTACCAGCTCATTGAATCAACAAATACTTGATATGAAGACAGAAGGGACATCAGCAGCAATACAGATGAAAGTAGAAACAAGCTTAGAAAGGCGAATGTGGGCGTCCAGAATGACAAAGGAAGTGATGGACATGAATAACCATCTTCAATCAAGGTTACTAGACATGATGCGGATTCGATTGTTCGAGCCTGCAAAAATTAGCTCGTCCTCAAAGAAACAAAAAGATGAAAGAGATCGAGTTGCAAAGAAGAGGGAGAAGCGTACATTGTCATTCCATTAA

Protein sequence

MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTRKEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGELLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEHNSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLFSGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCTVCIRDISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMSSLDKYPQPANLMKSTIPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTKEVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRTLSFH

Homology

[Close]

BLAST of CsaV3_1G009550 vs. NCBI nr
Match: KGN64400.1 (hypothetical protein Csa_1G050390 [Cucumis sativus])

HSP 1 Score: 932.6 bits (2409), Expect = 5.4e-268
Identity = 473/473 (100.00%), Postives = 473/473 (100.00%), Query Frame = 0


Query: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTR 60
           MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTR
Sbjct: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTR 60

Query: 61  KEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGE 120
           KEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGE
Sbjct: 61  KEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGE 120

Query: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEH 180
           LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEH
Sbjct: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEH 180

Query: 181 NSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF 240
           NSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF
Sbjct: 181 NSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF 240

Query: 241 SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCTVCIR 300
           SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCTVCIR
Sbjct: 241 SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCTVCIR 300

Query: 301 DISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMSSLDKYPQPANLMKST 360
           DISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMSSLDKYPQPANLMKST
Sbjct: 301 DISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMSSLDKYPQPANLMKST 360

Query: 361 IPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK 420
           IPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK
Sbjct: 361 IPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK 420

Query: 421 EVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRTLSFH 474
           EVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRTLSFH
Sbjct: 421 EVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRTLSFH 473

[Close]

BLAST of CsaV3_1G009550 vs. NCBI nr
Match: XP_016899510.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 869.0 bits (2244), Expect = 7.4e-249
Identity = 441/473 (93.23%), Postives = 453/473 (95.77%), Query Frame = 0


Query: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTR 60
           MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIP+CASPPYGFICLRNEFFVASQTR
Sbjct: 91  MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPSCASPPYGFICLRNEFFVASQTR 150

Query: 61  KEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGE 120
           KEGSVGGG+IFIWSLNKP PPV SYTLETIGPLASTKD VYLAGGTHSGNIHLWEVGSG+
Sbjct: 151 KEGSVGGGTIFIWSLNKPQPPVMSYTLETIGPLASTKDSVYLAGGTHSGNIHLWEVGSGK 210

Query: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEH 180
           LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELV NSQP+VYCLM+H
Sbjct: 211 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVENSQPLVYCLMQH 270

Query: 181 NSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF 240
            SSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMI+GTQAHIEGITAIVLHPTEQVLF
Sbjct: 271 KSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIKGTQAHIEGITAIVLHPTEQVLF 330

Query: 241 SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCTVCIR 300
           SGTVDGQI ASRLE GFDNCIT++ENQILAPKGHKGAITALAFSQ  LISASEDCTVCI 
Sbjct: 331 SGTVDGQISASRLELGFDNCITVKENQILAPKGHKGAITALAFSQTDLISASEDCTVCIW 390

Query: 301 DISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMSSLDKYPQPANLMKST 360
           DIS QRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRV NQ SMSSLDKYPQPANLMKST
Sbjct: 391 DISRQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNQFSMSSLDKYPQPANLMKST 450

Query: 361 IPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK 420
           IPLFSS+QPL ENLNSI FTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK
Sbjct: 451 IPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK 510

Query: 421 EVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRTLSFH 474
           +VMDMNNHLQSR+LDMMRIRLFEP KI+SSSKKQKDERDRVAKK EK   SFH
Sbjct: 511 QVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKMEKLPSSFH 563

[Close]

BLAST of CsaV3_1G009550 vs. NCBI nr
Match: XP_016899511.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 869.0 bits (2244), Expect = 7.4e-249
Identity = 441/473 (93.23%), Postives = 453/473 (95.77%), Query Frame = 0


Query: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTR 60
           MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIP+CASPPYGFICLRNEFFVASQTR
Sbjct: 18  MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPSCASPPYGFICLRNEFFVASQTR 77

Query: 61  KEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGE 120
           KEGSVGGG+IFIWSLNKP PPV SYTLETIGPLASTKD VYLAGGTHSGNIHLWEVGSG+
Sbjct: 78  KEGSVGGGTIFIWSLNKPQPPVMSYTLETIGPLASTKDSVYLAGGTHSGNIHLWEVGSGK 137

Query: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEH 180
           LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELV NSQP+VYCLM+H
Sbjct: 138 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVENSQPLVYCLMQH 197

Query: 181 NSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF 240
            SSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMI+GTQAHIEGITAIVLHPTEQVLF
Sbjct: 198 KSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIKGTQAHIEGITAIVLHPTEQVLF 257

Query: 241 SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCTVCIR 300
           SGTVDGQI ASRLE GFDNCIT++ENQILAPKGHKGAITALAFSQ  LISASEDCTVCI 
Sbjct: 258 SGTVDGQISASRLELGFDNCITVKENQILAPKGHKGAITALAFSQTDLISASEDCTVCIW 317

Query: 301 DISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMSSLDKYPQPANLMKST 360
           DIS QRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRV NQ SMSSLDKYPQPANLMKST
Sbjct: 318 DISRQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNQFSMSSLDKYPQPANLMKST 377

Query: 361 IPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK 420
           IPLFSS+QPL ENLNSI FTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK
Sbjct: 378 IPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK 437

Query: 421 EVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRTLSFH 474
           +VMDMNNHLQSR+LDMMRIRLFEP KI+SSSKKQKDERDRVAKK EK   SFH
Sbjct: 438 QVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKMEKLPSSFH 490

[Close]

BLAST of CsaV3_1G009550 vs. NCBI nr
Match: XP_022137407.1 (protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Momordica charantia])

HSP 1 Score: 760.8 bits (1963), Expect = 2.8e-216
Identity = 386/473 (81.61%), Postives = 420/473 (88.79%), Query Frame = 0


Query: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTR 60
           MGNGGE  ALAVCSD+NMG GITIWDV+TG TLLHIPTCASPPYG ICLRNEF VASQTR
Sbjct: 17  MGNGGEREALAVCSDKNMGSGITIWDVETGDTLLHIPTCASPPYGLICLRNEFLVASQTR 76

Query: 61  KEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGE 120
           KEGSVGGGSIFIWSLNKP PP+ SY LE IGPLASTKDGVYLAGG  SGNIHLWEVGSG+
Sbjct: 77  KEGSVGGGSIFIWSLNKPQPPLRSYPLEPIGPLASTKDGVYLAGGALSGNIHLWEVGSGK 136

Query: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEH 180
           LLKLWSGH KP+KC+LFSWDDSFLITGS+DGMICVWSMI LLDVE   +SQPI+YCLMEH
Sbjct: 137 LLKLWSGHRKPIKCILFSWDDSFLITGSADGMICVWSMICLLDVEHERSSQPILYCLMEH 196

Query: 181 NSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF 240
            SSLTGLL MS C+ SIIISSSLDGSLKFWDL+SGMI G+QAH EGITAIVLHPTEQ+LF
Sbjct: 197 KSSLTGLLAMSVCT-SIIISSSLDGSLKFWDLISGMIMGSQAHTEGITAIVLHPTEQLLF 256

Query: 241 SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCTVCIR 300
           SG+VDGQIFAS+LEFG DNCI +++NQ+LAPKGHKGAITALAFS+M LIS SEDCTVCI 
Sbjct: 257 SGSVDGQIFASKLEFGVDNCIAMKDNQLLAPKGHKGAITALAFSRMDLISTSEDCTVCIW 316

Query: 301 DISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMSSLDKYPQPANLMKST 360
           DISSQRIIQKLDHKKGRITNLVAIP  SLIS SNRKR  N  S+SSLDKYPQPANL+ ST
Sbjct: 317 DISSQRIIQKLDHKKGRITNLVAIPWPSLISMSNRKRALNHFSVSSLDKYPQPANLLNST 376

Query: 361 IPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK 420
           IPLF  + PL EN NSIRF+S  SLNQQI DMKTEGTSAAIQMKVETSLE +MWASR+TK
Sbjct: 377 IPLFPPLHPLEENWNSIRFSSNDSLNQQIFDMKTEGTSAAIQMKVETSLESQMWASRITK 436

Query: 421 EVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRTLSFH 474
           +VM+MNNHLQSRLLDMMRIRLF+ AK++S +KK K +RDRVA  REK+  SFH
Sbjct: 437 QVMEMNNHLQSRLLDMMRIRLFKSAKVNSPTKKLKGKRDRVAGMREKQPSSFH 488

[Close]

BLAST of CsaV3_1G009550 vs. NCBI nr
Match: XP_022954958.1 (protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita moschata])

HSP 1 Score: 741.9 bits (1914), Expect = 1.4e-210
Identity = 378/474 (79.75%), Postives = 412/474 (86.92%), Query Frame = 0


Query: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTR 60
           M N GE+MALAVCSD+NMG GITIWD KTG+TLLHIPTCASP YG I LRNEF VASQTR
Sbjct: 1   MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTR 60

Query: 61  KEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGE 120
           KEGSVGGGS+F+WSL+KP  P+ SY LE IGPLASTKDG YLAGG HSGNIHLWEVGSG+
Sbjct: 61  KEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGAYLAGGAHSGNIHLWEVGSGK 120

Query: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEH 180
           LLKLWSGHHKP+K +LFSWDDSFLITGS+DGMICVWSMISLLDVELVG++QPI+YCLMEH
Sbjct: 121 LLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMISLLDVELVGSAQPILYCLMEH 180

Query: 181 NSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF 240
            SSLTGL+TMSG SMS+IISSSLDGSLKFWDLMSGMIRGTQ H+EGIT IVLHPTEQ LF
Sbjct: 181 KSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQGHVEGITEIVLHPTEQFLF 240

Query: 241 SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCTVCIR 300
           SGTVDG+IFASRLEFG DNCITI+E+Q+ A  GHKGAITALAFSQM L+SASEDCTVCI 
Sbjct: 241 SGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSQMDLVSASEDCTVCIW 300

Query: 301 DISSQRIIQKLDHKKGRITNLVAIPRSS-LISTSNRKRVSNQSSMSSLDKYPQPANLMKS 360
           DI SQRIIQKLDHKKGRITNLVA+PRSS LISTSNRKRV  Q      DKYPQPANL  S
Sbjct: 301 DIDSQRIIQKLDHKKGRITNLVAVPRSSLLISTSNRKRVLKQ-----FDKYPQPANLSTS 360

Query: 361 TIPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMT 420
           TIPLF S +PLGEN N + FTS  SLNQQI DMKTEGTSAAIQMKV+T L+ RMWASRMT
Sbjct: 361 TIPLFPSSRPLGENPNLVGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMT 420

Query: 421 KEVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRTLSFH 474
           K+VM+MNNHLQS+LLDMM+ RLF         KK+KD+RDRVA+ REK  LSFH
Sbjct: 421 KQVMEMNNHLQSKLLDMMQTRLF--------PKKRKDQRDRVARTREKHPLSFH 461

[Close]

BLAST of CsaV3_1G009550 vs. TAIR10
Match: AT3G49180.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 208.4 bits (529), Expect = 9.8e-54
Identity = 144/415 (34.70%), Postives = 214/415 (51.57%), Query Frame = 0


Query: 8   MALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTRKEGSVGG 67
           M + V +  ++  GI  WD+KTG   L    CASP +G   +  +F  +SQ     +   
Sbjct: 1   MEITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNT--S 60

Query: 68  GSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGELLKLWSG 127
           GSIF WS  KP   V SY +E I  LA+  +G YL GG  SG+I+LWEV +G+LLK W G
Sbjct: 61  GSIFYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHG 120

Query: 128 HHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLL-DVELVGNSQPIVYCLMEHNSSLTG 187
           H++ V C++FS DDS L++GS DG I VWS+I L  D +    +    +   EH  S+T 
Sbjct: 121 HYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTD 180

Query: 188 LLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLFSGTVDG 247
           ++   G   ++IISSS D + K W L  G +         I A+ L P   V ++G  D 
Sbjct: 181 IVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDS 240

Query: 248 QIFASRLEFGFDNCITIRENQILAPKGHKG-AITALAF--SQMYLISASEDCTVCIRDIS 307
           +I+      G  N  +    Q+L     KG AIT LA+      LIS SED  VC+ D  
Sbjct: 241 KIY-----IGAINATSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPK 300

Query: 308 SQRIIQKLDHKKGR---ITNLVAIPRSSLISTSNRKRVSNQSSMS----SLDKYPQPA-- 367
           S R ++ L H KG      N + I R ++++ SN+ +VS +S  +     L+KY +P   
Sbjct: 301 SLRHVRTLIHAKGSRKGPVNNIQIVRKTIVANSNKTQVSWKSRGALIPPPLEKYERPVED 360

Query: 368 ---NLMKSTIPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVE 407
               ++    P FS +           F S   +++Q+ +++ +G SAA +M++E
Sbjct: 361 TMDGIVTVDPPPFSDVPVYSS------FLSADLIDEQVKELQQQG-SAATEMEME 401

[Close]

BLAST of CsaV3_1G009550 vs. TAIR10
Match: AT2G33340.1 (MOS4-associated complex 3B)

HSP 1 Score: 56.6 bits (135), Expect = 4.8e-08
Identity = 48/199 (24.12%), Postives = 88/199 (44.22%), Query Frame = 0


Query: 102 LAGGTHSGNIHLWEVGSGELLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISL 161
           +A G       L++  SG++L   +GH K V  V F  D   ++T S+D  + +W     
Sbjct: 237 IATGGVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPG- 296

Query: 162 LDVELVGNSQPIVYCLMEHNSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSG----MI 221
                   +    Y L +H++ +  +      +    +S+SLDG+  F+DL SG     +
Sbjct: 297 ------DGNYACGYTLNDHSAEVRAVTVHP--TNKYFVSASLDGTWCFYDLSSGSCLAQV 356

Query: 222 RGTQAHIEGITAIVLHPTEQVLFSGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGA 281
                +++  TA   HP   +L +GT    +    ++          +  +    GH G 
Sbjct: 357 SDDSKNVD-YTAAAFHPDGLILGTGTSQSVVKIWDVK---------SQANVAKFDGHTGE 416

Query: 282 ITALAFSQ--MYLISASED 295
           +TA++FS+   +L +A+ED
Sbjct: 417 VTAISFSENGYFLATAAED 416

[Close]

BLAST of CsaV3_1G009550 vs. TAIR10
Match: AT1G04510.1 (MOS4-associated complex 3A)

HSP 1 Score: 52.8 bits (125), Expect = 6.9e-07
Identity = 47/195 (24.10%), Postives = 85/195 (43.59%), Query Frame = 0


Query: 113 LWEVGSGELLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQP 172
           L++  SG++L   +GH K V  + F  D   ++T SSD  + +W             +  
Sbjct: 248 LFDRPSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSE-------DGNYT 307

Query: 173 IVYCLMEHNSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGM----IRGTQAHIEGIT 232
             + L +H++ +  +   +  +    +S+SLD +  F+DL SG+    +     +    T
Sbjct: 308 SRHTLKDHSAEVRAVTVHA--TNKYFVSASLDSTWCFYDLSSGLCLAQVTDASENDVNYT 367

Query: 233 AIVLHPTEQVLFSGTV-------DGQIFASRLEFGFDNCITIRENQILAPKGHKGAITAL 292
           A   HP   +L +GT        D +  A+  +FG                GH G IT++
Sbjct: 368 AAAFHPDGLILGTGTAQSIVKIWDVKSQANVAKFG----------------GHNGEITSI 417

Query: 293 AFSQ--MYLISASED 295
           +FS+   +L +A+ D
Sbjct: 428 SFSENGYFLATAALD 417

[Close]

BLAST of CsaV3_1G009550 vs. TAIR10
Match: AT2G45540.2 (WD-40 repeat family protein / beige-related)

HSP 1 Score: 49.3 bits (116), Expect = 7.6e-06
Identity = 23/64 (35.94%), Postives = 34/64 (53.12%), Query Frame = 0


Query: 93   LASTKDGVYLAGGTHSGNIHLWEVGSGELLKLWSGHHKPVKCVLFSWDDSFLITGSSDGM 152
            +A T DG  + GG    +I L      + L+   GH  PV C+  S D++FL+TGS D  
Sbjct: 2687 IAITSDGEIITGGHADNSIKLVSSDGAKTLETAFGHCAPVTCLALSPDNNFLVTGSRDST 2746

Query: 153  ICVW 157
            + +W
Sbjct: 2747 VLLW 2750

[Close]

BLAST of CsaV3_1G009550 vs. TAIR10
Match: AT4G21130.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 47.8 bits (112), Expect = 2.2e-05
Identity = 22/65 (33.85%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 93  LASTKDGVYLAGGTHSGNIHLWEVGSGELLKLWSGHHKPVKCVLFSWDDSFLITGSSDGM 152
           LA + DG YLA G    ++HLW++ + E ++ ++GH   V  + F    + L +GS DG 
Sbjct: 212 LAVSSDGRYLATGGVDCHVHLWDIRTREHVQAFTGHCGIVSSLCFREGTAELFSGSYDGT 271

Query: 153 ICVWS 158
           + +W+
Sbjct: 272 LSIWN 276

[Close]

BLAST of CsaV3_1G009550 vs. Swiss-Prot
Match: sp|Q9M3B4|RID3_ARATH (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.8e-52
Identity = 144/415 (34.70%), Postives = 214/415 (51.57%), Query Frame = 0


Query: 8   MALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTRKEGSVGG 67
           M + V +  ++  GI  WD+KTG   L    CASP +G   +  +F  +SQ     +   
Sbjct: 1   MEITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNT--S 60

Query: 68  GSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGELLKLWSG 127
           GSIF WS  KP   V SY +E I  LA+  +G YL GG  SG+I+LWEV +G+LLK W G
Sbjct: 61  GSIFYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHG 120

Query: 128 HHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLL-DVELVGNSQPIVYCLMEHNSSLTG 187
           H++ V C++FS DDS L++GS DG I VWS+I L  D +    +    +   EH  S+T 
Sbjct: 121 HYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTD 180

Query: 188 LLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLFSGTVDG 247
           ++   G   ++IISSS D + K W L  G +         I A+ L P   V ++G  D 
Sbjct: 181 IVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDS 240

Query: 248 QIFASRLEFGFDNCITIRENQILAPKGHKG-AITALAF--SQMYLISASEDCTVCIRDIS 307
           +I+      G  N  +    Q+L     KG AIT LA+      LIS SED  VC+ D  
Sbjct: 241 KIY-----IGAINATSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPK 300

Query: 308 SQRIIQKLDHKKGR---ITNLVAIPRSSLISTSNRKRVSNQSSMS----SLDKYPQPA-- 367
           S R ++ L H KG      N + I R ++++ SN+ +VS +S  +     L+KY +P   
Sbjct: 301 SLRHVRTLIHAKGSRKGPVNNIQIVRKTIVANSNKTQVSWKSRGALIPPPLEKYERPVED 360

Query: 368 ---NLMKSTIPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVE 407
               ++    P FS +           F S   +++Q+ +++ +G SAA +M++E
Sbjct: 361 TMDGIVTVDPPPFSDVPVYSS------FLSADLIDEQVKELQQQG-SAATEMEME 401

[Close]

BLAST of CsaV3_1G009550 vs. Swiss-Prot
Match: sp|Q3SZD4|WDR18_BOVIN (WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.7e-26
Identity = 95/335 (28.36%), Postives = 158/335 (47.16%), Query Frame = 0


Query: 8   MALAVCSDRNMGL-GITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTRKEGSVG 67
           M +AVC+D    L    +W++ +G  LL      + P G   L  E+ +A+Q      +G
Sbjct: 5   MEVAVCTDSAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------LG 64

Query: 68  GGSIFIWSLNKPLPPVTSYTLETIGP---LASTKDGVYLAGGTHSGNIHLWEVGSGELLK 127
              I  W L +         +   GP   L ++ +G+Y+  G  S NI+LWEV +G LL 
Sbjct: 65  KNYICAWELQR--KDQLQQKIMCPGPVTCLTTSPNGLYVLAGI-SENIYLWEVSTGNLLV 124

Query: 128 LWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEHNSS 187
           + S H++ V C+ F+ D S  I+G  D ++  WS+ S+L  +      P  +    H   
Sbjct: 125 ILSRHYQDVSCLQFTGDSSHFISGGKDCLVLAWSLCSVLQADPSRTPAP-RHVWSRHTLP 184

Query: 188 LTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLFSGT 247
           +T L    G  ++ + ++SLD ++K W++ SG +  +     GI A+ +   E  +F G 
Sbjct: 185 ITDLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGG 244

Query: 248 VDGQIFASRL---EFGFDNCITIRENQILAPKGHKGAITALAFSQ--MYLISASEDCTVC 307
            DG IF   L       +      +      +GH+  +T L+ S     L+S S D TV 
Sbjct: 245 SDGSIFQVDLCTWPGQREKSFQPEQEHGKVFRGHRNQVTCLSVSTDGSVLLSGSHDETVR 304

Query: 308 IRDISSQRIIQKLDHKKGRITN--LVAIPRSSLIS 332
           + D+ SQ+ ++ +   KG +TN  ++  P S L S
Sbjct: 305 LWDVQSQQCLRTVT-LKGPVTNACIMLAPVSMLSS 328

[Close]

BLAST of CsaV3_1G009550 vs. Swiss-Prot
Match: sp|Q9BV38|WDR18_HUMAN (WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-24
Identity = 95/336 (28.27%), Postives = 161/336 (47.92%), Query Frame = 0


Query: 8   MALAVCSDRNMGL-GITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTRKEGSVG 67
           M +AVC+D    +    +W++ +G  LL      + P G   L  E+ +A+Q      +G
Sbjct: 5   MEVAVCTDSAAPMWSCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------LG 64

Query: 68  GGSIFIWSLNKPLPPVTSYTLETIGP---LASTKDGVYLAGGTHSGNIHLWEVGSGELLK 127
              I  W L +         +   GP   L ++ +G+Y+  G  + +IHLWEV +G LL 
Sbjct: 65  KNYISAWELQR--KDQLQQKIMCPGPVTCLTASPNGLYVLAGV-AESIHLWEVSTGNLLV 124

Query: 128 LWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEHNSS 187
           + S H++ V C+ F+ D S  I+G  D ++ VWS+ S+L  +      P  +    H   
Sbjct: 125 ILSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPAP-RHVWSHHALP 184

Query: 188 LTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLFSGT 247
           +T L    G  ++ + +SSLD ++K W++ SG +  +      I A+ +   E  +F G 
Sbjct: 185 ITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGG 244

Query: 248 VDGQIFASRLEFGF----DNCITIRENQILAPKGHKGAITALAFSQ--MYLISASEDCTV 307
            +G IF   L F +    +      ++     KGH+  +T L+ S     L+S S D TV
Sbjct: 245 SEGSIFQVDL-FTWPGQRERSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETV 304

Query: 308 CIRDISSQRIIQKLDHKKGRITN--LVAIPRSSLIS 332
            + D+ S++ I+ +   KG +TN  ++  P S L S
Sbjct: 305 RLWDVQSKQCIRTV-ALKGPVTNAAILLAPVSMLSS 328

[Close]

BLAST of CsaV3_1G009550 vs. Swiss-Prot
Match: sp|Q499N3|WDR18_RAT (WD repeat-containing protein 18 OS=Rattus norvegicus OX=10116 GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-23
Identity = 87/322 (27.02%), Postives = 150/322 (46.58%), Query Frame = 0


Query: 8   MALAVCSDRNMGL-GITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTRKEGSVG 67
           M + VC+D    L    +W++ +G  LL      + P G   L  E+ +A+Q       G
Sbjct: 5   MEVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQQ------G 64

Query: 68  GGSIFIWSLNKPLPPVTSYTLETIGP---LASTKDGVYLAGGTHSGNIHLWEVGSGELLK 127
              I  W L +         +   GP   L +  +G+Y+  G  + +I+LWEV +G LL 
Sbjct: 65  KNYICAWELQR--KDQLQQKIMCPGPVTCLTTAPNGLYVLAGI-AESIYLWEVSTGNLLV 124

Query: 128 LWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEHNSS 187
           + S H++ V C+ F+ D S  ++   D ++  WS+ S+L  +      P  +   +H   
Sbjct: 125 ILSRHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQADPSRILAP-RHVWSQHTLP 184

Query: 188 LTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLFSGT 247
           +T L    G  M+ + ++SLD ++K W + SG +  +     GIT++ +   E  +F G 
Sbjct: 185 ITDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCGG 244

Query: 248 VDGQIFASRL---EFGFDNCITIRENQILAPKGHKGAITALAFSQ--MYLISASEDCTVC 307
            DG IF   L       +      +N     KGH+  +T L+ S     L+S S D +V 
Sbjct: 245 SDGSIFQVDLCSRPGPREQSFQPEQNTGKVFKGHRNQVTCLSVSTDGSILLSGSHDESVR 304

Query: 308 IRDISSQRIIQKLDHKKGRITN 321
           + D+ S++ ++ +   KG +TN
Sbjct: 305 LWDVKSKQCVRTVP-LKGPVTN 315

[Close]

BLAST of CsaV3_1G009550 vs. Swiss-Prot
Match: sp|Q4VBE8|WDR18_MOUSE (WD repeat-containing protein 18 OS=Mus musculus OX=10090 GN=Wdr18 PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.6e-23
Identity = 90/330 (27.27%), Postives = 151/330 (45.76%), Query Frame = 0


Query: 8   MALAVCSDRNMGL-GITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTRKEGSVG 67
           M + VC+D    L    +W++ +G  LL      + P G   L  E+ +A+Q       G
Sbjct: 5   MEVVVCTDAAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQQ------G 64

Query: 68  GGSIFIWSLNKPLPPVTSYTLETIGP---LASTKDGVYLAGGTHSGNIHLWEVGSGELLK 127
              I  W L +         +   GP   L +  +G+Y+  G  + +I+LWEV +G LL 
Sbjct: 65  KNYICAWELQR--KDQLQQKIMCPGPVTCLTTAPNGLYVLAGI-AESIYLWEVCTGNLLV 124

Query: 128 LWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEHNSS 187
           + S H++ V C+ F+ D S  ++   D +   WS+ S+L  +      P  +   +H   
Sbjct: 125 ILSRHYQDVSCLKFTGDGSHFVSAGKDCLALAWSLCSVLQADPSRILAP-RHVWSQHTLP 184

Query: 188 LTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLFSGT 247
           +T L    G  M+ + ++SLD ++K W + SG +  +     GIT++ +   E  +F G 
Sbjct: 185 ITDLHCGFGGPMARVATASLDQTVKLWAISSGDLLLSVLFDMGITSVTMDLAEHHIFCGG 244

Query: 248 VDGQIFASRL-------EFGFDNCITIRENQILAPKGHKGAITALAFSQ--MYLISASED 307
            DG IF   L       E  F       +N     KGH+  +T L+ S     L+S S D
Sbjct: 245 SDGSIFQVDLCSWPGLREHSFQP----EQNTGKVFKGHRNQVTCLSVSTDGSVLLSGSHD 304

Query: 308 CTVCIRDISSQRIIQKLDHKKGRITNLVAI 325
            +V + D+ S++ ++ +   KG +TN   I
Sbjct: 305 ESVRLWDVKSKQCLRTVT-LKGPVTNAAII 319

[Close]

BLAST of CsaV3_1G009550 vs. TrEMBL
Match: tr|A0A0A0LR59|A0A0A0LR59_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050390 PE=4 SV=1)

HSP 1 Score: 932.6 bits (2409), Expect = 3.6e-268
Identity = 473/473 (100.00%), Postives = 473/473 (100.00%), Query Frame = 0


Query: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTR 60
           MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTR
Sbjct: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTR 60

Query: 61  KEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGE 120
           KEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGE
Sbjct: 61  KEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGE 120

Query: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEH 180
           LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEH
Sbjct: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEH 180

Query: 181 NSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF 240
           NSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF
Sbjct: 181 NSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF 240

Query: 241 SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCTVCIR 300
           SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCTVCIR
Sbjct: 241 SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCTVCIR 300

Query: 301 DISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMSSLDKYPQPANLMKST 360
           DISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMSSLDKYPQPANLMKST
Sbjct: 301 DISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMSSLDKYPQPANLMKST 360

Query: 361 IPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK 420
           IPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK
Sbjct: 361 IPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK 420

Query: 421 EVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRTLSFH 474
           EVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRTLSFH
Sbjct: 421 EVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRTLSFH 473

[Close]

BLAST of CsaV3_1G009550 vs. TrEMBL
Match: tr|A0A1S4DU43|A0A1S4DU43_CUCME (protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 869.0 bits (2244), Expect = 4.9e-249
Identity = 441/473 (93.23%), Postives = 453/473 (95.77%), Query Frame = 0


Query: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTR 60
           MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIP+CASPPYGFICLRNEFFVASQTR
Sbjct: 18  MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPSCASPPYGFICLRNEFFVASQTR 77

Query: 61  KEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGE 120
           KEGSVGGG+IFIWSLNKP PPV SYTLETIGPLASTKD VYLAGGTHSGNIHLWEVGSG+
Sbjct: 78  KEGSVGGGTIFIWSLNKPQPPVMSYTLETIGPLASTKDSVYLAGGTHSGNIHLWEVGSGK 137

Query: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEH 180
           LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELV NSQP+VYCLM+H
Sbjct: 138 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVENSQPLVYCLMQH 197

Query: 181 NSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF 240
            SSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMI+GTQAHIEGITAIVLHPTEQVLF
Sbjct: 198 KSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIKGTQAHIEGITAIVLHPTEQVLF 257

Query: 241 SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCTVCIR 300
           SGTVDGQI ASRLE GFDNCIT++ENQILAPKGHKGAITALAFSQ  LISASEDCTVCI 
Sbjct: 258 SGTVDGQISASRLELGFDNCITVKENQILAPKGHKGAITALAFSQTDLISASEDCTVCIW 317

Query: 301 DISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMSSLDKYPQPANLMKST 360
           DIS QRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRV NQ SMSSLDKYPQPANLMKST
Sbjct: 318 DISRQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNQFSMSSLDKYPQPANLMKST 377

Query: 361 IPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK 420
           IPLFSS+QPL ENLNSI FTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK
Sbjct: 378 IPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK 437

Query: 421 EVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRTLSFH 474
           +VMDMNNHLQSR+LDMMRIRLFEP KI+SSSKKQKDERDRVAKK EK   SFH
Sbjct: 438 QVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKMEKLPSSFH 490

[Close]

BLAST of CsaV3_1G009550 vs. TrEMBL
Match: tr|A0A1S4DUX3|A0A1S4DUX3_CUCME (protein ROOT INITIATION DEFECTIVE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 869.0 bits (2244), Expect = 4.9e-249
Identity = 441/473 (93.23%), Postives = 453/473 (95.77%), Query Frame = 0


Query: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTR 60
           MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIP+CASPPYGFICLRNEFFVASQTR
Sbjct: 91  MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPSCASPPYGFICLRNEFFVASQTR 150

Query: 61  KEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGE 120
           KEGSVGGG+IFIWSLNKP PPV SYTLETIGPLASTKD VYLAGGTHSGNIHLWEVGSG+
Sbjct: 151 KEGSVGGGTIFIWSLNKPQPPVMSYTLETIGPLASTKDSVYLAGGTHSGNIHLWEVGSGK 210

Query: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEH 180
           LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELV NSQP+VYCLM+H
Sbjct: 211 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVENSQPLVYCLMQH 270

Query: 181 NSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF 240
            SSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMI+GTQAHIEGITAIVLHPTEQVLF
Sbjct: 271 KSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIKGTQAHIEGITAIVLHPTEQVLF 330

Query: 241 SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCTVCIR 300
           SGTVDGQI ASRLE GFDNCIT++ENQILAPKGHKGAITALAFSQ  LISASEDCTVCI 
Sbjct: 331 SGTVDGQISASRLELGFDNCITVKENQILAPKGHKGAITALAFSQTDLISASEDCTVCIW 390

Query: 301 DISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMSSLDKYPQPANLMKST 360
           DIS QRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRV NQ SMSSLDKYPQPANLMKST
Sbjct: 391 DISRQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNQFSMSSLDKYPQPANLMKST 450

Query: 361 IPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK 420
           IPLFSS+QPL ENLNSI FTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK
Sbjct: 451 IPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK 510

Query: 421 EVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRTLSFH 474
           +VMDMNNHLQSR+LDMMRIRLFEP KI+SSSKKQKDERDRVAKK EK   SFH
Sbjct: 511 QVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKMEKLPSSFH 563

[Close]

BLAST of CsaV3_1G009550 vs. TrEMBL
Match: tr|A0A1S4DU54|A0A1S4DU54_CUCME (protein ROOT INITIATION DEFECTIVE 3-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 651.7 bits (1680), Expect = 1.2e-183
Identity = 353/473 (74.63%), Postives = 362/473 (76.53%), Query Frame = 0


Query: 1   MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTR 60
           MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIP+CASPPYGFICLRNEFFVASQTR
Sbjct: 91  MGNGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPSCASPPYGFICLRNEFFVASQTR 150

Query: 61  KEGSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGE 120
           KEGSVGGG+IFIWSLNKP PPV SYTLETIGPLASTKD VYLAGGTHSGNIHLWE     
Sbjct: 151 KEGSVGGGTIFIWSLNKPQPPVMSYTLETIGPLASTKDSVYLAGGTHSGNIHLWE----- 210

Query: 121 LLKLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEH 180
                                                                       
Sbjct: 211 ------------------------------------------------------------ 270

Query: 181 NSSLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLF 240
                                       FWDLMSGMI+GTQAHIEGITAIVLHPTEQVLF
Sbjct: 271 ----------------------------FWDLMSGMIKGTQAHIEGITAIVLHPTEQVLF 330

Query: 241 SGTVDGQIFASRLEFGFDNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCTVCIR 300
           SGTVDGQI ASRLE GFDNCIT++ENQILAPKGHKGAITALAFSQ  LISASEDCTVCI 
Sbjct: 331 SGTVDGQISASRLELGFDNCITVKENQILAPKGHKGAITALAFSQTDLISASEDCTVCIW 390

Query: 301 DISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMSSLDKYPQPANLMKST 360
           DIS QRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRV NQ SMSSLDKYPQPANLMKST
Sbjct: 391 DISRQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNQFSMSSLDKYPQPANLMKST 450

Query: 361 IPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK 420
           IPLFSS+QPL ENLNSI FTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK
Sbjct: 451 IPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTK 470

Query: 421 EVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKREKRTLSFH 474
           +VMDMNNHLQSR+LDMMRIRLFEP KI+SSSKKQKDERDRVAKK EK   SFH
Sbjct: 511 QVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKMEKLPSSFH 470

[Close]

BLAST of CsaV3_1G009550 vs. TrEMBL
Match: tr|A0A251P8U7|A0A251P8U7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G153000 PE=4 SV=1)

HSP 1 Score: 507.3 bits (1305), Expect = 3.7e-140
Identity = 259/460 (56.30%), Postives = 326/460 (70.87%), Query Frame = 0


Query: 3   NGGESMALAVCSDRNMGLGITIWDVKTGQTLLHIPTCASPPYGFICLRNEFFVASQTRKE 62
           NG E  A+ VCSD++MG+GITIW + TG  LLHIPTCAS P+G +CLRN+F VASQ  K 
Sbjct: 4   NGSE--AVVVCSDKSMGIGITIWGIDTGDRLLHIPTCASAPHGLVCLRNQFLVASQIHKH 63

Query: 63  GSVGGGSIFIWSLNKPLPPVTSYTLETIGPLASTKDGVYLAGGTHSGNIHLWEVGSGELL 122
           GSVGGG+I +W LNKP  P+ SY LE IGPL+ TKDGVYLAGG  SGN++LWEV +G+LL
Sbjct: 64  GSVGGGAISMWPLNKPQQPIRSYPLEAIGPLSCTKDGVYLAGGALSGNVYLWEVANGKLL 123

Query: 123 KLWSGHHKPVKCVLFSWDDSFLITGSSDGMICVWSMISLLDVELVGNSQPIVYCLMEHNS 182
           K W GHH+ + C+LFS D S L++ S DGMICVWSM+ LLD+E   +   +++  MEH S
Sbjct: 124 KTWRGHHRSLNCMLFSDDGSLLVSASDDGMICVWSMVGLLDMEDSQSFPSLLHYSMEHKS 183

Query: 183 SLTGLLTMSGCSMSIIISSSLDGSLKFWDLMSGMIRGTQAHIEGITAIVLHPTEQVLFSG 242
           S+TGLLT SG S  ++ISSSLDGS K WDL+ G +  TQ ++  ITA+VLHPTEQ+ FSG
Sbjct: 184 SITGLLTTSGSSNVVLISSSLDGSCKVWDLVLGKLMQTQVYLLAITAVVLHPTEQLFFSG 243

Query: 243 TVDGQIFASRLEFGF-DNCITIRENQILAPKGHKGAITALAFSQMYLISASEDCTVCIRD 302
           ++DG+IF ++LE G  +N +   E+Q    KGHKGA+TAL FSQ  L+SASEDCT+CI D
Sbjct: 244 SIDGRIFVNKLEIGLVENSLAAAEDQKSVIKGHKGAVTALTFSQAGLVSASEDCTICIWD 303

Query: 303 ISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMSSLDKYPQPANLMKSTI 362
           I++  II++ DHKKG +TNL  IPRSSL+S SN +RVSN   +SSLDKYPQP N  K  +
Sbjct: 304 ITNWAIIRRFDHKKGAVTNLAVIPRSSLLSVSNHRRVSNAFGVSSLDKYPQPPNSSKEKM 363

Query: 363 PLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKVETSLERRMWASRMTKE 422
           PL SS   L  N        T+   QQI D + E + AA+QMK+ETSLE RMWA+RM K 
Sbjct: 364 PLLSSCHFLKGN-------QTTHSEQQICDTEEEFSPAAMQMKLETSLEHRMWATRMAKH 423

Query: 423 VMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRV 462
           VM+MN HLQ+RLLD+M+  L         S   K    R+
Sbjct: 424 VMEMNTHLQTRLLDLMQSGLLRSTSTEMDSPPTKKRETRM 454

The following BLAST results are available for this feature:

BLAST of CsaV3_1G009550 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64400.1	5.4e-268	100.00	hypothetical protein Csa_1G050390 [Cucumis sativus]	[more]
XP_016899510.1	7.4e-249	93.23	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Cucumis melo]	[more]
XP_016899511.1	7.4e-249	93.23	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X2 [Cucumis melo]	[more]
XP_022137407.1	2.8e-216	81.61	protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Momordica charantia]	[more]
XP_022954958.1	1.4e-210	79.75	protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita moschata]	[more]

BLAST of CsaV3_1G009550 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49180.1	9.8e-54	34.70	Transducin/WD40 repeat-like superfamily protein	[more]
AT2G33340.1	4.8e-08	24.12	MOS4-associated complex 3B	[more]
AT1G04510.1	6.9e-07	24.10	MOS4-associated complex 3A	[more]
AT2G45540.2	7.6e-06	35.94	WD-40 repeat family protein / beige-related	[more]
AT4G21130.1	2.2e-05	33.85	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of CsaV3_1G009550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M3B4\|RID3_ARATH	1.8e-52	34.70	Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1...	[more]
sp\|Q3SZD4\|WDR18_BOVIN	3.7e-26	28.36	WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1	[more]
sp\|Q9BV38\|WDR18_HUMAN	1.6e-24	28.27	WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2	[more]
sp\|Q499N3\|WDR18_RAT	1.3e-23	27.02	WD repeat-containing protein 18 OS=Rattus norvegicus OX=10116 GN=Wdr18 PE=2 SV=1	[more]
sp\|Q4VBE8\|WDR18_MOUSE	8.6e-23	27.27	WD repeat-containing protein 18 OS=Mus musculus OX=10090 GN=Wdr18 PE=1 SV=1	[more]

BLAST of CsaV3_1G009550 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LR59\|A0A0A0LR59_CUCSA	3.6e-268	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050390 PE=4 SV=1	[more]
tr\|A0A1S4DU43\|A0A1S4DU43_CUCME	4.9e-249	93.23	protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A1S4DUX3\|A0A1S4DUX3_CUCME	4.9e-249	93.23	protein ROOT INITIATION DEFECTIVE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A1S4DU54\|A0A1S4DU54_CUCME	1.2e-183	74.63	protein ROOT INITIATION DEFECTIVE 3-like isoform X3 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A251P8U7\|A0A251P8U7_PRUPE	3.7e-140	56.30	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G153000 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036322	WD40_repeat_dom_sf
IPR017986	WD40_repeat_dom
IPR019775	WD40_repeat_CS
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR001680	WD40_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G009550.1	CsaV3_1G009550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 118..157 e-value: 3.4E-8 score: 43.2 coord: 80..115 e-value: 95.0 score: 4.5 coord: 170..211 e-value: 0.37 score: 19.8 coord: 214..252 e-value: 13.0 score: 9.9 coord: 262..301 e-value: 8.4E-4 score: 28.6
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 270..299 e-value: 0.11 score: 13.3 coord: 120..157 e-value: 6.3E-6 score: 26.7
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 177..220 score: 8.938
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 271..310 score: 8.503
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 125..158 score: 12.28
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	G3DSA:2.130.10.10		coord: 4..216 e-value: 5.8E-28 score: 99.6
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	G3DSA:2.130.10.10		coord: 217..350 e-value: 3.3E-15 score: 57.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 446..473
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 449..473
None	No IPR available	PANTHER	PTHR18763:SF2	SUBFAMILY NOT NAMED	coord: 1..453
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 1..453
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 198..212
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 83..310 score: 19.512
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	SSF50978	WD40 repeat-like	coord: 11..333

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G009550	CSPI01G09440	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G009550	Cucsa.392000	Cucumber (Gy14) v1	cgycucB592
CsaV3_1G009550	CmaCh18G003250	Cucurbita maxima (Rimu)	cmacucB0474
CsaV3_1G009550	Cp4.1LG09g09590	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G009550	CsGy1G009490	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G009550	Carg06790	Silver-seed gourd	carcucB0529
CsaV3_1G009550	Cla002610	Watermelon (97103) v1	cucwmB013
CsaV3_1G009550	MELO3C002353	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G009550	Lsi02G004930	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G009550	Cla97C03G054800	Watermelon (97103) v2	cucwmbB030
CsaV3_1G009550	Bhi08G001218	Wax gourd	cucwgoB035

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G009550	Cucurbita moschata (Rifu)	cmocucB0066
CsaV3_1G009550	Cucurbita moschata (Rifu)	cmocucB0110
CsaV3_1G009550	Cucurbita moschata (Rifu)	cmocucB0222
CsaV3_1G009550	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G009550	Cucurbita pepo (Zucchini)	cpecucB0439
CsaV3_1G009550	Cucurbita pepo (Zucchini)	cpecucB0634
CsaV3_1G009550	Cucurbita pepo (Zucchini)	cpecucB0808
CsaV3_1G009550	Wild cucumber (PI 183967)	cpicucB015
CsaV3_1G009550	Bottle gourd (USVL1VR-Ls)	cuclsiB077
CsaV3_1G009550	Melon (DHL92) v3.5.1	cucmeB051
CsaV3_1G009550	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G009550	Melon (DHL92) v3.6.1	cucmedB048
CsaV3_1G009550	Watermelon (Charleston Gray)	cucwcgB038
CsaV3_1G009550	Watermelon (Charleston Gray)	cucwcgB080
CsaV3_1G009550	Watermelon (97103) v1	cucwmB098
CsaV3_1G009550	Watermelon (97103) v2	cucwmbB071
CsaV3_1G009550	Cucumber (Chinese Long) v3	cuccucB003
CsaV3_1G009550	Cucumber (Chinese Long) v3	cuccucB010
CsaV3_1G009550	Silver-seed gourd	carcucB0397
CsaV3_1G009550	Silver-seed gourd	carcucB1046
CsaV3_1G009550	Cucumber (Gy14) v2	cgybcucB011
CsaV3_1G009550	Cucumber (Gy14) v1	cgycucB237
CsaV3_1G009550	Cucurbita maxima (Rimu)	cmacucB0078
CsaV3_1G009550	Cucurbita maxima (Rimu)	cmacucB0124
CsaV3_1G009550	Cucurbita maxima (Rimu)	cmacucB0235