Cla97C03G054800 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G054800
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	protein ROOT INITIATION DEFECTIVE 3-like
Location	Cla97Chr03 : 3850956 .. 3851923 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTAATTTCTGCATCTGAGGATTGCACCGTCTGCATATGGGACATCAGCAGTCAGAGGATAATACAAAAGCTTGACCATAAGAAAGGTAATAACTCGATCAATGAACTTCTCGCCTTTTTTCAGTTCGCTATCTGATTACCATCCTTGTGGCTTTTGAAGATTTGAAAACGTTTTAGGGTTGTACATGTAGTTCTGGAAACTTGATCTAAGATAGAAATGATTGTTTCAAGAGAGGTCAATTTAGTTTTTTCATCATTGCCATACGACGGTGATGCACAAACAAACAATTTTCCTCTTCAGGAGTTCTATTTGGGATCTCTGAACATGCATCAGATTGTTGTTTTTTGTCCATTAACAGGGAGAATAACCAATTTGGTAGCAGTTCCACAGTCGTCCTTGATCTCTACATCAATTCGTAAGAGAGTCTTGAATCAATTCTCCGTGTCCCCCCTCGACAAGTATCCTCAGCCTGACAATTTGTTGAAGAGCACGATACCTCTCTTTCCCTCCCTCCAACCTCTCCGAGAGAATCTGAATTCCATCGGATTCACGAGTACTGGCTCATTGAATCAGCAAATACTTGATACGAAGGTCAGTCTCTCCTTCAATCTTTCTACAATAGCCTTAATATAGCTGCTAATAGTAATGCTAGTCAAGTCAATTGGAAAAATTGCCGCCATATTATCAATATATTCTTACTCCTTTTCCATTATATTTAGACTGAAGGGACATCAGCAGCAATACAGATGAAAGTAGAAACAAACTTAGAGAGGCGAATGTGGGCTTCCAGAATGACAAAGCAAGTGATGGACATGAACAACCAACTTCAATCACGGTTAGTAGACATGATGCGGATTCGATTGTTTGGACCTGCAAAAATTAGCTCATCCTCCAAGAAACAAAAAGATGTAAGAGATCGAGTTGCAAGGACGAGGAAGAAGCGTCCATTGTCATTCCATTAA

mRNA sequence

ATGGATCTAATTTCTGCATCTGAGGATTGCACCGTCTGCATATGGGACATCAGCAGTCAGAGGATAATACAAAAGCTTGACCATAAGAAAGGGAGAATAACCAATTTGGTAGCAGTTCCACAGTCGTCCTTGATCTCTACATCAATTCGTAAGAGAGTCTTGAATCAATTCTCCGTGTCCCCCCTCGACAAGTATCCTCAGCCTGACAATTTGTTGAAGAGCACGATACCTCTCTTTCCCTCCCTCCAACCTCTCCGAGAGAATCTGAATTCCATCGGATTCACGAGTACTGGCTCATTGAATCAGCAAATACTTGATACGAAGACTGAAGGGACATCAGCAGCAATACAGATGAAAGTAGAAACAAACTTAGAGAGGCGAATGTGGGCTTCCAGAATGACAAAGCAAGTGATGGACATGAACAACCAACTTCAATCACGGTTAGTAGACATGATGCGGATTCGATTGTTTGGACCTGCAAAAATTAGCTCATCCTCCAAGAAACAAAAAGATGTAAGAGATCGAGTTGCAAGGACGAGGAAGAAGCGTCCATTGTCATTCCATTAA

Coding sequence (CDS)

ATGGATCTAATTTCTGCATCTGAGGATTGCACCGTCTGCATATGGGACATCAGCAGTCAGAGGATAATACAAAAGCTTGACCATAAGAAAGGGAGAATAACCAATTTGGTAGCAGTTCCACAGTCGTCCTTGATCTCTACATCAATTCGTAAGAGAGTCTTGAATCAATTCTCCGTGTCCCCCCTCGACAAGTATCCTCAGCCTGACAATTTGTTGAAGAGCACGATACCTCTCTTTCCCTCCCTCCAACCTCTCCGAGAGAATCTGAATTCCATCGGATTCACGAGTACTGGCTCATTGAATCAGCAAATACTTGATACGAAGACTGAAGGGACATCAGCAGCAATACAGATGAAAGTAGAAACAAACTTAGAGAGGCGAATGTGGGCTTCCAGAATGACAAAGCAAGTGATGGACATGAACAACCAACTTCAATCACGGTTAGTAGACATGATGCGGATTCGATTGTTTGGACCTGCAAAAATTAGCTCATCCTCCAAGAAACAAAAAGATGTAAGAGATCGAGTTGCAAGGACGAGGAAGAAGCGTCCATTGTCATTCCATTAA

Protein sequence

MDLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVSPLDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKVETNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTRKKRPLSFH

Homology

[Close]

BLAST of Cla97C03G054800 vs. NCBI nr
Match: XP_016899510.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 5.8e-80
Identity = 161/187 (86.10%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 2   DLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVSP 61
           DLISASEDCTVCIWDIS QRIIQKLDHKKGRITNLVA+P+SSLISTS RKRVLNQFS+S 
Sbjct: 377 DLISASEDCTVCIWDISRQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNQFSMSS 436

Query: 62  LDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKVE 121
           LDKYPQP NL+KSTIPLF SLQPL+ENLNSIGFTST SLNQQILD KTEGTSAAIQMKVE
Sbjct: 437 LDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVE 496

Query: 122 TNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTRK 181
           T+LERRMWASRMTKQVMDMNN LQSR++DMMRIRLF P KI+SSSKKQKD RDRVA+  +
Sbjct: 497 TSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKME 556

Query: 182 KRPLSFH 189
           K P SFH
Sbjct: 557 KLPSSFH 563

[Close]

BLAST of Cla97C03G054800 vs. NCBI nr
Match: XP_016899511.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 5.8e-80
Identity = 161/187 (86.10%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 2   DLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVSP 61
           DLISASEDCTVCIWDIS QRIIQKLDHKKGRITNLVA+P+SSLISTS RKRVLNQFS+S 
Sbjct: 304 DLISASEDCTVCIWDISRQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNQFSMSS 363

Query: 62  LDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKVE 121
           LDKYPQP NL+KSTIPLF SLQPL+ENLNSIGFTST SLNQQILD KTEGTSAAIQMKVE
Sbjct: 364 LDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVE 423

Query: 122 TNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTRK 181
           T+LERRMWASRMTKQVMDMNN LQSR++DMMRIRLF P KI+SSSKKQKD RDRVA+  +
Sbjct: 424 TSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKME 483

Query: 182 KRPLSFH 189
           K P SFH
Sbjct: 484 KLPSSFH 490

[Close]

BLAST of Cla97C03G054800 vs. NCBI nr
Match: XP_016899514.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X3 [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 5.8e-80
Identity = 161/187 (86.10%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 2   DLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVSP 61
           DLISASEDCTVCIWDIS QRIIQKLDHKKGRITNLVA+P+SSLISTS RKRVLNQFS+S 
Sbjct: 284 DLISASEDCTVCIWDISRQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNQFSMSS 343

Query: 62  LDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKVE 121
           LDKYPQP NL+KSTIPLF SLQPL+ENLNSIGFTST SLNQQILD KTEGTSAAIQMKVE
Sbjct: 344 LDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVE 403

Query: 122 TNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTRK 181
           T+LERRMWASRMTKQVMDMNN LQSR++DMMRIRLF P KI+SSSKKQKD RDRVA+  +
Sbjct: 404 TSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKME 463

Query: 182 KRPLSFH 189
           K P SFH
Sbjct: 464 KLPSSFH 470

[Close]

BLAST of Cla97C03G054800 vs. NCBI nr
Match: KGN64400.1 (hypothetical protein Csa_1G050390 [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 2.1e-77
Identity = 161/188 (85.64%), Postives = 171/188 (90.96%), Query Frame = 0


Query: 1   MDLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVS 60
           M LISASEDCTVCI DISSQRIIQKLDHKKGRITNLVA+P+SSLISTS RKRV NQ S+S
Sbjct: 286 MYLISASEDCTVCIRDISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMS 345

Query: 61  PLDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKV 120
            LDKYPQP NL+KSTIPLF S+QPL ENLNSI FTST SLNQQILD KTEGTSAAIQMKV
Sbjct: 346 SLDKYPQPANLMKSTIPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKV 405

Query: 121 ETNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTR 180
           ET+LERRMWASRMTK+VMDMNN LQSRL+DMMRIRLF PAKISSSSKKQKD RDRVA+ R
Sbjct: 406 ETSLERRMWASRMTKEVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKR 465

Query: 181 KKRPLSFH 189
           +KR LSFH
Sbjct: 466 EKRTLSFH 473

[Close]

BLAST of Cla97C03G054800 vs. NCBI nr
Match: XP_022137407.1 (protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Momordica charantia])

HSP 1 Score: 273.9 bits (699), Expect = 4.2e-70
Identity = 146/188 (77.66%), Postives = 158/188 (84.04%), Query Frame = 0


Query: 1   MDLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVS 60
           MDLIS SEDCTVCIWDISSQRIIQKLDHKKGRITNLVA+P  SLIS S RKR LN FSVS
Sbjct: 301 MDLISTSEDCTVCIWDISSQRIIQKLDHKKGRITNLVAIPWPSLISMSNRKRALNHFSVS 360

Query: 61  PLDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKV 120
            LDKYPQP NLL STIPLFP L PL EN NSI F+S  SLNQQI D KTEGTSAAIQMKV
Sbjct: 361 SLDKYPQPANLLNSTIPLFPPLHPLEENWNSIRFSSNDSLNQQIFDMKTEGTSAAIQMKV 420

Query: 121 ETNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTR 180
           ET+LE +MWASR+TKQVM+MNN LQSRL+DMMRIRLF  AK++S +KK K  RDRVA  R
Sbjct: 421 ETSLESQMWASRITKQVMEMNNHLQSRLLDMMRIRLFKSAKVNSPTKKLKGKRDRVAGMR 480

Query: 181 KKRPLSFH 189
           +K+P SFH
Sbjct: 481 EKQPSSFH 488

[Close]

BLAST of Cla97C03G054800 vs. TrEMBL
Match: tr|A0A1S4DU54|A0A1S4DU54_CUCME (protein ROOT INITIATION DEFECTIVE 3-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 3.8e-80
Identity = 161/187 (86.10%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 2   DLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVSP 61
           DLISASEDCTVCIWDIS QRIIQKLDHKKGRITNLVA+P+SSLISTS RKRVLNQFS+S 
Sbjct: 284 DLISASEDCTVCIWDISRQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNQFSMSS 343

Query: 62  LDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKVE 121
           LDKYPQP NL+KSTIPLF SLQPL+ENLNSIGFTST SLNQQILD KTEGTSAAIQMKVE
Sbjct: 344 LDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVE 403

Query: 122 TNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTRK 181
           T+LERRMWASRMTKQVMDMNN LQSR++DMMRIRLF P KI+SSSKKQKD RDRVA+  +
Sbjct: 404 TSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKME 463

Query: 182 KRPLSFH 189
           K P SFH
Sbjct: 464 KLPSSFH 470

[Close]

BLAST of Cla97C03G054800 vs. TrEMBL
Match: tr|A0A1S4DU43|A0A1S4DU43_CUCME (protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 3.8e-80
Identity = 161/187 (86.10%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 2   DLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVSP 61
           DLISASEDCTVCIWDIS QRIIQKLDHKKGRITNLVA+P+SSLISTS RKRVLNQFS+S 
Sbjct: 304 DLISASEDCTVCIWDISRQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNQFSMSS 363

Query: 62  LDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKVE 121
           LDKYPQP NL+KSTIPLF SLQPL+ENLNSIGFTST SLNQQILD KTEGTSAAIQMKVE
Sbjct: 364 LDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVE 423

Query: 122 TNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTRK 181
           T+LERRMWASRMTKQVMDMNN LQSR++DMMRIRLF P KI+SSSKKQKD RDRVA+  +
Sbjct: 424 TSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKME 483

Query: 182 KRPLSFH 189
           K P SFH
Sbjct: 484 KLPSSFH 490

[Close]

BLAST of Cla97C03G054800 vs. TrEMBL
Match: tr|A0A1S4DUX3|A0A1S4DUX3_CUCME (protein ROOT INITIATION DEFECTIVE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 3.8e-80
Identity = 161/187 (86.10%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 2   DLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVSP 61
           DLISASEDCTVCIWDIS QRIIQKLDHKKGRITNLVA+P+SSLISTS RKRVLNQFS+S 
Sbjct: 377 DLISASEDCTVCIWDISRQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNQFSMSS 436

Query: 62  LDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKVE 121
           LDKYPQP NL+KSTIPLF SLQPL+ENLNSIGFTST SLNQQILD KTEGTSAAIQMKVE
Sbjct: 437 LDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVE 496

Query: 122 TNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTRK 181
           T+LERRMWASRMTKQVMDMNN LQSR++DMMRIRLF P KI+SSSKKQKD RDRVA+  +
Sbjct: 497 TSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKME 556

Query: 182 KRPLSFH 189
           K P SFH
Sbjct: 557 KLPSSFH 563

[Close]

BLAST of Cla97C03G054800 vs. TrEMBL
Match: tr|A0A0A0LR59|A0A0A0LR59_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050390 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 1.4e-77
Identity = 161/188 (85.64%), Postives = 171/188 (90.96%), Query Frame = 0


Query: 1   MDLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVS 60
           M LISASEDCTVCI DISSQRIIQKLDHKKGRITNLVA+P+SSLISTS RKRV NQ S+S
Sbjct: 286 MYLISASEDCTVCIRDISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMS 345

Query: 61  PLDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKV 120
            LDKYPQP NL+KSTIPLF S+QPL ENLNSI FTST SLNQQILD KTEGTSAAIQMKV
Sbjct: 346 SLDKYPQPANLMKSTIPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKV 405

Query: 121 ETNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTR 180
           ET+LERRMWASRMTK+VMDMNN LQSRL+DMMRIRLF PAKISSSSKKQKD RDRVA+ R
Sbjct: 406 ETSLERRMWASRMTKEVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKR 465

Query: 181 KKRPLSFH 189
           +KR LSFH
Sbjct: 466 EKRTLSFH 473

[Close]

BLAST of Cla97C03G054800 vs. TrEMBL
Match: tr|A0A2N9EKD8|A0A2N9EKD8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3145 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.8e-38
Identity = 87/172 (50.58%), Postives = 115/172 (66.86%), Query Frame = 0


Query: 1   MDLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVS 60
           + LISASEDCT+C+WD+ +  II++ +H KG +TNL  +PQSSL S S  +RV NQF VS
Sbjct: 285 LGLISASEDCTICMWDVVNWVIIRRFNHGKGAVTNLTVIPQSSLHSVSNHQRVSNQFHVS 344

Query: 61  PLDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKV 120
            LDKYPQP N  K TI          E   S+ F ST SL Q I D + + T  A+QMKV
Sbjct: 345 LLDKYPQPANSFKGTITPPSLCHSYEEKQTSLDFRSTDSLQQHIFDLEKKRTPEAVQMKV 404

Query: 121 ETNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDV 173
           ET +E RMWA+RMTK VM+MN  LQ+RL+D+M  R+F P +I   + K++++
Sbjct: 405 ETCIENRMWATRMTKHVMEMNKHLQTRLLDLMECRMFWPTEIDIPTSKKREI 456

[Close]

BLAST of Cla97C03G054800 vs. TAIR10
Match: AT3G49180.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 43.9 bits (102), Expect = 1.3e-04
Identity = 42/161 (26.09%), Postives = 79/161 (49.07%), Query Frame = 0


Query: 3   LISASEDCTVCIWDISSQRIIQKLDHKKGR---ITNLVAVPQSSLISTSIRKRV----LN 62
           LIS SED  VC+WD  S R ++ L H KG      N + + + ++++ S + +V      
Sbjct: 278 LISGSEDGVVCVWDPKSLRHVRTLIHAKGSRKGPVNNIQIVRKTIVANSNKTQVSWKSRG 337

Query: 63  QFSVSPLDKYPQP-DNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSA 122
                PL+KY +P ++ +   + + P   P  +      F S   +++Q+ + + +G SA
Sbjct: 338 ALIPPPLEKYERPVEDTMDGIVTVDP--PPFSDVPVYSSFLSADLIDEQVKELQQQG-SA 397

Query: 123 AIQMKVE-TNLERRMWASRMTKQVMDMNNQLQSRLVDMMRI 155
           A +M++E   LE         K+ + MN Q Q    +++++
Sbjct: 398 ATEMEMERLKLE--------YKRSLQMNEQWQKNYENLLQV 427

The following BLAST results are available for this feature:

BLAST of Cla97C03G054800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899510.1	5.8e-80	86.10	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Cucumis melo]	[more]
XP_016899511.1	5.8e-80	86.10	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X2 [Cucumis melo]	[more]
XP_016899514.1	5.8e-80	86.10	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X3 [Cucumis melo]	[more]
KGN64400.1	2.1e-77	85.64	hypothetical protein Csa_1G050390 [Cucumis sativus]	[more]
XP_022137407.1	4.2e-70	77.66	protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Momordica charantia]	[more]

BLAST of Cla97C03G054800 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DU54\|A0A1S4DU54_CUCME	3.8e-80	86.10	protein ROOT INITIATION DEFECTIVE 3-like isoform X3 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A1S4DU43\|A0A1S4DU43_CUCME	3.8e-80	86.10	protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A1S4DUX3\|A0A1S4DUX3_CUCME	3.8e-80	86.10	protein ROOT INITIATION DEFECTIVE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A0A0LR59\|A0A0A0LR59_CUCSA	1.4e-77	85.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050390 PE=4 SV=1	[more]
tr\|A0A2N9EKD8\|A0A2N9EKD8_FAGSY	4.8e-38	50.58	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3145 PE=4 SV=1	[more]

BLAST of Cla97C03G054800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C03G054800 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49180.1	1.3e-04	26.09	Transducin/WD40 repeat-like superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036322	WD40_repeat_dom_sf
IPR001680	WD40_repeat
IPR017986	WD40_repeat_dom
IPR019775	WD40_repeat_CS
IPR015943	WD40/YVTN_repeat-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006522	alanine metabolic process
biological_process	GO:0006526	arginine biosynthetic process
biological_process	GO:0006531	aspartate metabolic process
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0030174	regulation of DNA-dependent DNA replication initiation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005656	nuclear pre-replicative complex
cellular_component	GO:0097344	Rix1 complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004055	argininosuccinate synthase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G054800.1	Cla97C03G054800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	G3DSA:2.130.10.10		coord: 2..121 e-value: 4.4E-7 score: 31.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..188
None	No IPR available	PANTHER	PTHR18763:SF2	SUBFAMILY NOT NAMED	coord: 3..169
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 3..169
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 3..17
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 1..25 score: 9.467
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 1..25 score: 9.64
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	SSF50978	WD40 repeat-like	coord: 3..99

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C03G054800	Cla002610	Watermelon (97103) v1	wmwmbB124
Cla97C03G054800	Csa1G050390	Cucumber (Chinese Long) v2	cuwmbB032
Cla97C03G054800	MELO3C002353	Melon (DHL92) v3.5.1	mewmbB156
Cla97C03G054800	CSPI01G09440	Wild cucumber (PI 183967)	cpiwmbB032
Cla97C03G054800	Cucsa.392000	Cucumber (Gy14) v1	cgywmbB671
Cla97C03G054800	CmaCh18G003250	Cucurbita maxima (Rimu)	cmawmbB417
Cla97C03G054800	Lsi02G004930	Bottle gourd (USVL1VR-Ls)	lsiwmbB176
Cla97C03G054800	CsGy1G009490	Cucumber (Gy14) v2	cgybwmbB032
Cla97C03G054800	Carg06790	Silver-seed gourd	carwmbB0517
Cla97C03G054800	CsaV3_1G009550	Cucumber (Chinese Long) v3	cucwmbB030
Cla97C03G054800	Bhi08G001218	Wax gourd	wgowmbB472

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C03G054800	Watermelon (97103) v2	wmbwmbB118
Cla97C03G054800	Silver-seed gourd	carwmbB0379
Cla97C03G054800	Silver-seed gourd	carwmbB1060
Cla97C03G054800	Cucumber (Gy14) v2	cgybwmbB048
Cla97C03G054800	Cucumber (Gy14) v1	cgywmbB263
Cla97C03G054800	Cucurbita maxima (Rimu)	cmawmbB068
Cla97C03G054800	Cucurbita maxima (Rimu)	cmawmbB118
Cla97C03G054800	Cucurbita maxima (Rimu)	cmawmbB227
Cla97C03G054800	Cucurbita moschata (Rifu)	cmowmbB055
Cla97C03G054800	Cucurbita moschata (Rifu)	cmowmbB105
Cla97C03G054800	Cucurbita moschata (Rifu)	cmowmbB211
Cla97C03G054800	Cucurbita moschata (Rifu)	cmowmbB394
Cla97C03G054800	Wild cucumber (PI 183967)	cpiwmbB051
Cla97C03G054800	Cucumber (Chinese Long) v3	cucwmbB048
Cla97C03G054800	Cucumber (Chinese Long) v2	cuwmbB050
Cla97C03G054800	Bottle gourd (USVL1VR-Ls)	lsiwmbB364
Cla97C03G054800	Melon (DHL92) v3.6.1	medwmbB145
Cla97C03G054800	Melon (DHL92) v3.6.1	medwmbB233
Cla97C03G054800	Melon (DHL92) v3.5.1	mewmbB248
Cla97C03G054800	Watermelon (Charleston Gray)	wcgwmbB186
Cla97C03G054800	Watermelon (Charleston Gray)	wcgwmbB262
Cla97C03G054800	Watermelon (97103) v1	wmwmbB396