Cla97C03G054800.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G054800.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	protein ROOT INITIATION DEFECTIVE 3-like
Location	Cla97Chr03 : 3850956 .. 3851923 (-)
Sequence length	567

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTAATTTCTGCATCTGAGGATTGCACCGTCTGCATATGGGACATCAGCAGTCAGAGGATAATACAAAAGCTTGACCATAAGAAAGGTAATAACTCGATCAATGAACTTCTCGCCTTTTTTCAGTTCGCTATCTGATTACCATCCTTGTGGCTTTTGAAGATTTGAAAACGTTTTAGGGTTGTACATGTAGTTCTGGAAACTTGATCTAAGATAGAAATGATTGTTTCAAGAGAGGTCAATTTAGTTTTTTCATCATTGCCATACGACGGTGATGCACAAACAAACAATTTTCCTCTTCAGGAGTTCTATTTGGGATCTCTGAACATGCATCAGATTGTTGTTTTTTGTCCATTAACAGGGAGAATAACCAATTTGGTAGCAGTTCCACAGTCGTCCTTGATCTCTACATCAATTCGTAAGAGAGTCTTGAATCAATTCTCCGTGTCCCCCCTCGACAAGTATCCTCAGCCTGACAATTTGTTGAAGAGCACGATACCTCTCTTTCCCTCCCTCCAACCTCTCCGAGAGAATCTGAATTCCATCGGATTCACGAGTACTGGCTCATTGAATCAGCAAATACTTGATACGAAGGTCAGTCTCTCCTTCAATCTTTCTACAATAGCCTTAATATAGCTGCTAATAGTAATGCTAGTCAAGTCAATTGGAAAAATTGCCGCCATATTATCAATATATTCTTACTCCTTTTCCATTATATTTAGACTGAAGGGACATCAGCAGCAATACAGATGAAAGTAGAAACAAACTTAGAGAGGCGAATGTGGGCTTCCAGAATGACAAAGCAAGTGATGGACATGAACAACCAACTTCAATCACGGTTAGTAGACATGATGCGGATTCGATTGTTTGGACCTGCAAAAATTAGCTCATCCTCCAAGAAACAAAAAGATGTAAGAGATCGAGTTGCAAGGACGAGGAAGAAGCGTCCATTGTCATTCCATTAA

mRNA sequence

ATGGATCTAATTTCTGCATCTGAGGATTGCACCGTCTGCATATGGGACATCAGCAGTCAGAGGATAATACAAAAGCTTGACCATAAGAAAGGGAGAATAACCAATTTGGTAGCAGTTCCACAGTCGTCCTTGATCTCTACATCAATTCGTAAGAGAGTCTTGAATCAATTCTCCGTGTCCCCCCTCGACAAGTATCCTCAGCCTGACAATTTGTTGAAGAGCACGATACCTCTCTTTCCCTCCCTCCAACCTCTCCGAGAGAATCTGAATTCCATCGGATTCACGAGTACTGGCTCATTGAATCAGCAAATACTTGATACGAAGACTGAAGGGACATCAGCAGCAATACAGATGAAAGTAGAAACAAACTTAGAGAGGCGAATGTGGGCTTCCAGAATGACAAAGCAAGTGATGGACATGAACAACCAACTTCAATCACGGTTAGTAGACATGATGCGGATTCGATTGTTTGGACCTGCAAAAATTAGCTCATCCTCCAAGAAACAAAAAGATGTAAGAGATCGAGTTGCAAGGACGAGGAAGAAGCGTCCATTGTCATTCCATTAA

Coding sequence (CDS)

ATGGATCTAATTTCTGCATCTGAGGATTGCACCGTCTGCATATGGGACATCAGCAGTCAGAGGATAATACAAAAGCTTGACCATAAGAAAGGGAGAATAACCAATTTGGTAGCAGTTCCACAGTCGTCCTTGATCTCTACATCAATTCGTAAGAGAGTCTTGAATCAATTCTCCGTGTCCCCCCTCGACAAGTATCCTCAGCCTGACAATTTGTTGAAGAGCACGATACCTCTCTTTCCCTCCCTCCAACCTCTCCGAGAGAATCTGAATTCCATCGGATTCACGAGTACTGGCTCATTGAATCAGCAAATACTTGATACGAAGACTGAAGGGACATCAGCAGCAATACAGATGAAAGTAGAAACAAACTTAGAGAGGCGAATGTGGGCTTCCAGAATGACAAAGCAAGTGATGGACATGAACAACCAACTTCAATCACGGTTAGTAGACATGATGCGGATTCGATTGTTTGGACCTGCAAAAATTAGCTCATCCTCCAAGAAACAAAAAGATGTAAGAGATCGAGTTGCAAGGACGAGGAAGAAGCGTCCATTGTCATTCCATTAA

Protein sequence

MDLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVSPLDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKVETNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTRKKRPLSFH

Homology

[Close]

BLAST of Cla97C03G054800.1 vs. NCBI nr
Match: XP_016899510.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 5.8e-80
Identity = 161/187 (86.10%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 2   DLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVSP 61
           DLISASEDCTVCIWDIS QRIIQKLDHKKGRITNLVA+P+SSLISTS RKRVLNQFS+S 
Sbjct: 377 DLISASEDCTVCIWDISRQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNQFSMSS 436

Query: 62  LDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKVE 121
           LDKYPQP NL+KSTIPLF SLQPL+ENLNSIGFTST SLNQQILD KTEGTSAAIQMKVE
Sbjct: 437 LDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVE 496

Query: 122 TNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTRK 181
           T+LERRMWASRMTKQVMDMNN LQSR++DMMRIRLF P KI+SSSKKQKD RDRVA+  +
Sbjct: 497 TSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKME 556

Query: 182 KRPLSFH 189
           K P SFH
Sbjct: 557 KLPSSFH 563

[Close]

BLAST of Cla97C03G054800.1 vs. NCBI nr
Match: XP_016899511.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 5.8e-80
Identity = 161/187 (86.10%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 2   DLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVSP 61
           DLISASEDCTVCIWDIS QRIIQKLDHKKGRITNLVA+P+SSLISTS RKRVLNQFS+S 
Sbjct: 304 DLISASEDCTVCIWDISRQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNQFSMSS 363

Query: 62  LDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKVE 121
           LDKYPQP NL+KSTIPLF SLQPL+ENLNSIGFTST SLNQQILD KTEGTSAAIQMKVE
Sbjct: 364 LDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVE 423

Query: 122 TNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTRK 181
           T+LERRMWASRMTKQVMDMNN LQSR++DMMRIRLF P KI+SSSKKQKD RDRVA+  +
Sbjct: 424 TSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKME 483

Query: 182 KRPLSFH 189
           K P SFH
Sbjct: 484 KLPSSFH 490

[Close]

BLAST of Cla97C03G054800.1 vs. NCBI nr
Match: XP_016899514.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X3 [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 5.8e-80
Identity = 161/187 (86.10%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 2   DLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVSP 61
           DLISASEDCTVCIWDIS QRIIQKLDHKKGRITNLVA+P+SSLISTS RKRVLNQFS+S 
Sbjct: 284 DLISASEDCTVCIWDISRQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNQFSMSS 343

Query: 62  LDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKVE 121
           LDKYPQP NL+KSTIPLF SLQPL+ENLNSIGFTST SLNQQILD KTEGTSAAIQMKVE
Sbjct: 344 LDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVE 403

Query: 122 TNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTRK 181
           T+LERRMWASRMTKQVMDMNN LQSR++DMMRIRLF P KI+SSSKKQKD RDRVA+  +
Sbjct: 404 TSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKME 463

Query: 182 KRPLSFH 189
           K P SFH
Sbjct: 464 KLPSSFH 470

[Close]

BLAST of Cla97C03G054800.1 vs. NCBI nr
Match: KGN64400.1 (hypothetical protein Csa_1G050390 [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 2.1e-77
Identity = 161/188 (85.64%), Postives = 171/188 (90.96%), Query Frame = 0


Query: 1   MDLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVS 60
           M LISASEDCTVCI DISSQRIIQKLDHKKGRITNLVA+P+SSLISTS RKRV NQ S+S
Sbjct: 286 MYLISASEDCTVCIRDISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMS 345

Query: 61  PLDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKV 120
            LDKYPQP NL+KSTIPLF S+QPL ENLNSI FTST SLNQQILD KTEGTSAAIQMKV
Sbjct: 346 SLDKYPQPANLMKSTIPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKV 405

Query: 121 ETNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTR 180
           ET+LERRMWASRMTK+VMDMNN LQSRL+DMMRIRLF PAKISSSSKKQKD RDRVA+ R
Sbjct: 406 ETSLERRMWASRMTKEVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKR 465

Query: 181 KKRPLSFH 189
           +KR LSFH
Sbjct: 466 EKRTLSFH 473

[Close]

BLAST of Cla97C03G054800.1 vs. NCBI nr
Match: XP_022137407.1 (protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Momordica charantia])

HSP 1 Score: 273.9 bits (699), Expect = 4.2e-70
Identity = 146/188 (77.66%), Postives = 158/188 (84.04%), Query Frame = 0


Query: 1   MDLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVS 60
           MDLIS SEDCTVCIWDISSQRIIQKLDHKKGRITNLVA+P  SLIS S RKR LN FSVS
Sbjct: 301 MDLISTSEDCTVCIWDISSQRIIQKLDHKKGRITNLVAIPWPSLISMSNRKRALNHFSVS 360

Query: 61  PLDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKV 120
            LDKYPQP NLL STIPLFP L PL EN NSI F+S  SLNQQI D KTEGTSAAIQMKV
Sbjct: 361 SLDKYPQPANLLNSTIPLFPPLHPLEENWNSIRFSSNDSLNQQIFDMKTEGTSAAIQMKV 420

Query: 121 ETNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTR 180
           ET+LE +MWASR+TKQVM+MNN LQSRL+DMMRIRLF  AK++S +KK K  RDRVA  R
Sbjct: 421 ETSLESQMWASRITKQVMEMNNHLQSRLLDMMRIRLFKSAKVNSPTKKLKGKRDRVAGMR 480

Query: 181 KKRPLSFH 189
           +K+P SFH
Sbjct: 481 EKQPSSFH 488

[Close]

BLAST of Cla97C03G054800.1 vs. TrEMBL
Match: tr|A0A1S4DU54|A0A1S4DU54_CUCME (protein ROOT INITIATION DEFECTIVE 3-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 3.8e-80
Identity = 161/187 (86.10%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 2   DLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVSP 61
           DLISASEDCTVCIWDIS QRIIQKLDHKKGRITNLVA+P+SSLISTS RKRVLNQFS+S 
Sbjct: 284 DLISASEDCTVCIWDISRQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNQFSMSS 343

Query: 62  LDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKVE 121
           LDKYPQP NL+KSTIPLF SLQPL+ENLNSIGFTST SLNQQILD KTEGTSAAIQMKVE
Sbjct: 344 LDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVE 403

Query: 122 TNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTRK 181
           T+LERRMWASRMTKQVMDMNN LQSR++DMMRIRLF P KI+SSSKKQKD RDRVA+  +
Sbjct: 404 TSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKME 463

Query: 182 KRPLSFH 189
           K P SFH
Sbjct: 464 KLPSSFH 470

[Close]

BLAST of Cla97C03G054800.1 vs. TrEMBL
Match: tr|A0A1S4DU43|A0A1S4DU43_CUCME (protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 3.8e-80
Identity = 161/187 (86.10%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 2   DLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVSP 61
           DLISASEDCTVCIWDIS QRIIQKLDHKKGRITNLVA+P+SSLISTS RKRVLNQFS+S 
Sbjct: 304 DLISASEDCTVCIWDISRQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNQFSMSS 363

Query: 62  LDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKVE 121
           LDKYPQP NL+KSTIPLF SLQPL+ENLNSIGFTST SLNQQILD KTEGTSAAIQMKVE
Sbjct: 364 LDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVE 423

Query: 122 TNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTRK 181
           T+LERRMWASRMTKQVMDMNN LQSR++DMMRIRLF P KI+SSSKKQKD RDRVA+  +
Sbjct: 424 TSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKME 483

Query: 182 KRPLSFH 189
           K P SFH
Sbjct: 484 KLPSSFH 490

[Close]

BLAST of Cla97C03G054800.1 vs. TrEMBL
Match: tr|A0A1S4DUX3|A0A1S4DUX3_CUCME (protein ROOT INITIATION DEFECTIVE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 3.8e-80
Identity = 161/187 (86.10%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 2   DLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVSP 61
           DLISASEDCTVCIWDIS QRIIQKLDHKKGRITNLVA+P+SSLISTS RKRVLNQFS+S 
Sbjct: 377 DLISASEDCTVCIWDISRQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNQFSMSS 436

Query: 62  LDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKVE 121
           LDKYPQP NL+KSTIPLF SLQPL+ENLNSIGFTST SLNQQILD KTEGTSAAIQMKVE
Sbjct: 437 LDKYPQPANLMKSTIPLFSSLQPLQENLNSIGFTSTSSLNQQILDMKTEGTSAAIQMKVE 496

Query: 122 TNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTRK 181
           T+LERRMWASRMTKQVMDMNN LQSR++DMMRIRLF P KI+SSSKKQKD RDRVA+  +
Sbjct: 497 TSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKINSSSKKQKDERDRVAKKME 556

Query: 182 KRPLSFH 189
           K P SFH
Sbjct: 557 KLPSSFH 563

[Close]

BLAST of Cla97C03G054800.1 vs. TrEMBL
Match: tr|A0A0A0LR59|A0A0A0LR59_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050390 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 1.4e-77
Identity = 161/188 (85.64%), Postives = 171/188 (90.96%), Query Frame = 0


Query: 1   MDLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVS 60
           M LISASEDCTVCI DISSQRIIQKLDHKKGRITNLVA+P+SSLISTS RKRV NQ S+S
Sbjct: 286 MYLISASEDCTVCIRDISSQRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVSNQSSMS 345

Query: 61  PLDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKV 120
            LDKYPQP NL+KSTIPLF S+QPL ENLNSI FTST SLNQQILD KTEGTSAAIQMKV
Sbjct: 346 SLDKYPQPANLMKSTIPLFSSIQPLGENLNSIRFTSTSSLNQQILDMKTEGTSAAIQMKV 405

Query: 121 ETNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDVRDRVARTR 180
           ET+LERRMWASRMTK+VMDMNN LQSRL+DMMRIRLF PAKISSSSKKQKD RDRVA+ R
Sbjct: 406 ETSLERRMWASRMTKEVMDMNNHLQSRLLDMMRIRLFEPAKISSSSKKQKDERDRVAKKR 465

Query: 181 KKRPLSFH 189
           +KR LSFH
Sbjct: 466 EKRTLSFH 473

[Close]

BLAST of Cla97C03G054800.1 vs. TrEMBL
Match: tr|A0A2N9EKD8|A0A2N9EKD8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3145 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.8e-38
Identity = 87/172 (50.58%), Postives = 115/172 (66.86%), Query Frame = 0


Query: 1   MDLISASEDCTVCIWDISSQRIIQKLDHKKGRITNLVAVPQSSLISTSIRKRVLNQFSVS 60
           + LISASEDCT+C+WD+ +  II++ +H KG +TNL  +PQSSL S S  +RV NQF VS
Sbjct: 285 LGLISASEDCTICMWDVVNWVIIRRFNHGKGAVTNLTVIPQSSLHSVSNHQRVSNQFHVS 344

Query: 61  PLDKYPQPDNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSAAIQMKV 120
            LDKYPQP N  K TI          E   S+ F ST SL Q I D + + T  A+QMKV
Sbjct: 345 LLDKYPQPANSFKGTITPPSLCHSYEEKQTSLDFRSTDSLQQHIFDLEKKRTPEAVQMKV 404

Query: 121 ETNLERRMWASRMTKQVMDMNNQLQSRLVDMMRIRLFGPAKISSSSKKQKDV 173
           ET +E RMWA+RMTK VM+MN  LQ+RL+D+M  R+F P +I   + K++++
Sbjct: 405 ETCIENRMWATRMTKHVMEMNKHLQTRLLDLMECRMFWPTEIDIPTSKKREI 456

[Close]

BLAST of Cla97C03G054800.1 vs. TAIR10
Match: AT3G49180.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 43.9 bits (102), Expect = 1.3e-04
Identity = 42/161 (26.09%), Postives = 79/161 (49.07%), Query Frame = 0


Query: 3   LISASEDCTVCIWDISSQRIIQKLDHKKGR---ITNLVAVPQSSLISTSIRKRV----LN 62
           LIS SED  VC+WD  S R ++ L H KG      N + + + ++++ S + +V      
Sbjct: 278 LISGSEDGVVCVWDPKSLRHVRTLIHAKGSRKGPVNNIQIVRKTIVANSNKTQVSWKSRG 337

Query: 63  QFSVSPLDKYPQP-DNLLKSTIPLFPSLQPLRENLNSIGFTSTGSLNQQILDTKTEGTSA 122
                PL+KY +P ++ +   + + P   P  +      F S   +++Q+ + + +G SA
Sbjct: 338 ALIPPPLEKYERPVEDTMDGIVTVDP--PPFSDVPVYSSFLSADLIDEQVKELQQQG-SA 397

Query: 123 AIQMKVE-TNLERRMWASRMTKQVMDMNNQLQSRLVDMMRI 155
           A +M++E   LE         K+ + MN Q Q    +++++
Sbjct: 398 ATEMEMERLKLE--------YKRSLQMNEQWQKNYENLLQV 427

The following BLAST results are available for this feature:

BLAST of Cla97C03G054800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899510.1	5.8e-80	86.10	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Cucumis melo]	[more]
XP_016899511.1	5.8e-80	86.10	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X2 [Cucumis melo]	[more]
XP_016899514.1	5.8e-80	86.10	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X3 [Cucumis melo]	[more]
KGN64400.1	2.1e-77	85.64	hypothetical protein Csa_1G050390 [Cucumis sativus]	[more]
XP_022137407.1	4.2e-70	77.66	protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Momordica charantia]	[more]

BLAST of Cla97C03G054800.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DU54\|A0A1S4DU54_CUCME	3.8e-80	86.10	protein ROOT INITIATION DEFECTIVE 3-like isoform X3 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A1S4DU43\|A0A1S4DU43_CUCME	3.8e-80	86.10	protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A1S4DUX3\|A0A1S4DUX3_CUCME	3.8e-80	86.10	protein ROOT INITIATION DEFECTIVE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A0A0LR59\|A0A0A0LR59_CUCSA	1.4e-77	85.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050390 PE=4 SV=1	[more]
tr\|A0A2N9EKD8\|A0A2N9EKD8_FAGSY	4.8e-38	50.58	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3145 PE=4 SV=1	[more]

BLAST of Cla97C03G054800.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C03G054800.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49180.1	1.3e-04	26.09	Transducin/WD40 repeat-like superfamily protein	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036322	WD40_repeat_dom_sf
IPR001680	WD40_repeat
IPR017986	WD40_repeat_dom
IPR019775	WD40_repeat_CS
IPR015943	WD40/YVTN_repeat-like_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C03G054800	Cla97C03G054800	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C03G054800.1	Cla97C03G054800.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C03G054800.1.CDS.3	Cla97C03G054800.1.CDS.3	CDS
Cla97C03G054800.1.CDS.2	Cla97C03G054800.1.CDS.2	CDS
Cla97C03G054800.1.CDS.1	Cla97C03G054800.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C03G054800.1.exon.3	Cla97C03G054800.1.exon.3	exon
Cla97C03G054800.1.exon.2	Cla97C03G054800.1.exon.2	exon
Cla97C03G054800.1.exon.1	Cla97C03G054800.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	G3DSA:2.130.10.10		coord: 2..121 e-value: 4.4E-7 score: 31.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..188
None	No IPR available	PANTHER	PTHR18763:SF2	SUBFAMILY NOT NAMED	coord: 3..169
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 3..169
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 3..17
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 1..25 score: 9.467
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 1..25 score: 9.64
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	SSF50978	WD40 repeat-like	coord: 3..99