Bhi08G001218 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G001218
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Protein root initiation defective 3
Location	chr8 : 42989784 .. 42990080 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACAAAACGCAGCCCATATTATCAATATATTCACCCTCCTTTTCATTCAGACAGAAGGGACATCGGCAGCAATACAGATGAAAGTAGAAACAAGCTTAGAAAGGCGAGTATGGGCTTCCAAAATGACGAAGCAAGTGATGGACATGAACAACCATCTTCAATCACGGTTACTAGACATGATGCGGATTCGATTGTTCGGGCCTACAAAAATTAGCTCGTCCTCGAAGAAACGAAAAGATGAAAGAGATCGAGTTGCAAGGACGAGGGAGAAGCGTCCATTGTCATTCCATTAA

mRNA sequence

ATGGGACAAAACGCAGCCCATATTATCAATATATTCACCCTCCTTTTCATTCAGACAGAAGGGACATCGGCAGCAATACAGATGAAAGTAGAAACAAGCTTAGAAAGGCGAGTATGGGCTTCCAAAATGACGAAGCAAGTGATGGACATGAACAACCATCTTCAATCACGGTTACTAGACATGATGCGGATTCGATTGTTCGGGCCTACAAAAATTAGCTCGTCCTCGAAGAAACGAAAAGATGAAAGAGATCGAGTTGCAAGGACGAGGGAGAAGCGTCCATTGTCATTCCATTAA

Coding sequence (CDS)

ATGGGACAAAACGCAGCCCATATTATCAATATATTCACCCTCCTTTTCATTCAGACAGAAGGGACATCGGCAGCAATACAGATGAAAGTAGAAACAAGCTTAGAAAGGCGAGTATGGGCTTCCAAAATGACGAAGCAAGTGATGGACATGAACAACCATCTTCAATCACGGTTACTAGACATGATGCGGATTCGATTGTTCGGGCCTACAAAAATTAGCTCGTCCTCGAAGAAACGAAAAGATGAAAGAGATCGAGTTGCAAGGACGAGGGAGAAGCGTCCATTGTCATTCCATTAA

Protein sequence

MGQNAAHIINIFTLLFIQTEGTSAAIQMKVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKISSSSKKRKDERDRVARTREKRPLSFH

Homology

[Close]

BLAST of Bhi08G001218 vs. TrEMBL
Match: tr|A0A0A0LR59|A0A0A0LR59_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050390 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.6e-29
Identity = 72/85 (84.71%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 14  LLFIQTEGTSAAIQMKVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKIS 73
           +L ++TEGTSAAIQMKVETSLERR+WAS+MTK+VMDMNNHLQSRLLDMMRIRLF P KIS
Sbjct: 389 ILDMKTEGTSAAIQMKVETSLERRMWASRMTKEVMDMNNHLQSRLLDMMRIRLFEPAKIS 448

Query: 74  SSSKKRKDERDRVARTREKRPLSFH 99
           SSSKK+KDERDRVA+ REKR LSFH
Sbjct: 449 SSSKKQKDERDRVAKKREKRTLSFH 473

[Close]

BLAST of Bhi08G001218 vs. TrEMBL
Match: tr|A0A1S4DU54|A0A1S4DU54_CUCME (protein ROOT INITIATION DEFECTIVE 3-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-28
Identity = 70/85 (82.35%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 14  LLFIQTEGTSAAIQMKVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKIS 73
           +L ++TEGTSAAIQMKVETSLERR+WAS+MTKQVMDMNNHLQSR+LDMMRIRLF PTKI+
Sbjct: 386 ILDMKTEGTSAAIQMKVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKIN 445

Query: 74  SSSKKRKDERDRVARTREKRPLSFH 99
           SSSKK+KDERDRVA+  EK P SFH
Sbjct: 446 SSSKKQKDERDRVAKKMEKLPSSFH 470

[Close]

BLAST of Bhi08G001218 vs. TrEMBL
Match: tr|A0A1S4DU43|A0A1S4DU43_CUCME (protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-28
Identity = 70/85 (82.35%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 14  LLFIQTEGTSAAIQMKVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKIS 73
           +L ++TEGTSAAIQMKVETSLERR+WAS+MTKQVMDMNNHLQSR+LDMMRIRLF PTKI+
Sbjct: 406 ILDMKTEGTSAAIQMKVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKIN 465

Query: 74  SSSKKRKDERDRVARTREKRPLSFH 99
           SSSKK+KDERDRVA+  EK P SFH
Sbjct: 466 SSSKKQKDERDRVAKKMEKLPSSFH 490

[Close]

BLAST of Bhi08G001218 vs. TrEMBL
Match: tr|A0A1S4DUX3|A0A1S4DUX3_CUCME (protein ROOT INITIATION DEFECTIVE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-28
Identity = 70/85 (82.35%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 14  LLFIQTEGTSAAIQMKVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKIS 73
           +L ++TEGTSAAIQMKVETSLERR+WAS+MTKQVMDMNNHLQSR+LDMMRIRLF PTKI+
Sbjct: 479 ILDMKTEGTSAAIQMKVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKIN 538

Query: 74  SSSKKRKDERDRVARTREKRPLSFH 99
           SSSKK+KDERDRVA+  EK P SFH
Sbjct: 539 SSSKKQKDERDRVAKKMEKLPSSFH 563

[Close]

BLAST of Bhi08G001218 vs. TrEMBL
Match: tr|A0A2I4EWM9|A0A2I4EWM9_9ROSI (protein ROOT INITIATION DEFECTIVE 3-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108993342 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-11
Identity = 37/63 (58.73%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 17  IQTEGTSAAIQMKVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKISSSS 76
           ++ E T AA+QMKVET +E R+WA++MTK VM+MN HLQSRLLD+M+ RL  PT+I S++
Sbjct: 413 LEKEQTPAAMQMKVETCIENRMWATRMTKHVMEMNKHLQSRLLDLMQCRLLWPTEIDSTT 472

Query: 77  KKR 80
            K+
Sbjct: 473 SKK 475

[Close]

BLAST of Bhi08G001218 vs. NCBI nr
Match: KGN64400.1 (hypothetical protein Csa_1G050390 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 2.4e-29
Identity = 72/85 (84.71%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 14  LLFIQTEGTSAAIQMKVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKIS 73
           +L ++TEGTSAAIQMKVETSLERR+WAS+MTK+VMDMNNHLQSRLLDMMRIRLF P KIS
Sbjct: 389 ILDMKTEGTSAAIQMKVETSLERRMWASRMTKEVMDMNNHLQSRLLDMMRIRLFEPAKIS 448

Query: 74  SSSKKRKDERDRVARTREKRPLSFH 99
           SSSKK+KDERDRVA+ REKR LSFH
Sbjct: 449 SSSKKQKDERDRVAKKREKRTLSFH 473

[Close]

BLAST of Bhi08G001218 vs. NCBI nr
Match: XP_016899510.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 2.7e-28
Identity = 70/85 (82.35%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 14  LLFIQTEGTSAAIQMKVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKIS 73
           +L ++TEGTSAAIQMKVETSLERR+WAS+MTKQVMDMNNHLQSR+LDMMRIRLF PTKI+
Sbjct: 479 ILDMKTEGTSAAIQMKVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKIN 538

Query: 74  SSSKKRKDERDRVARTREKRPLSFH 99
           SSSKK+KDERDRVA+  EK P SFH
Sbjct: 539 SSSKKQKDERDRVAKKMEKLPSSFH 563

[Close]

BLAST of Bhi08G001218 vs. NCBI nr
Match: XP_016899511.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 2.7e-28
Identity = 70/85 (82.35%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 14  LLFIQTEGTSAAIQMKVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKIS 73
           +L ++TEGTSAAIQMKVETSLERR+WAS+MTKQVMDMNNHLQSR+LDMMRIRLF PTKI+
Sbjct: 406 ILDMKTEGTSAAIQMKVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKIN 465

Query: 74  SSSKKRKDERDRVARTREKRPLSFH 99
           SSSKK+KDERDRVA+  EK P SFH
Sbjct: 466 SSSKKQKDERDRVAKKMEKLPSSFH 490

[Close]

BLAST of Bhi08G001218 vs. NCBI nr
Match: XP_016899514.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X3 [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 2.7e-28
Identity = 70/85 (82.35%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 14  LLFIQTEGTSAAIQMKVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKIS 73
           +L ++TEGTSAAIQMKVETSLERR+WAS+MTKQVMDMNNHLQSR+LDMMRIRLF PTKI+
Sbjct: 386 ILDMKTEGTSAAIQMKVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKIN 445

Query: 74  SSSKKRKDERDRVARTREKRPLSFH 99
           SSSKK+KDERDRVA+  EK P SFH
Sbjct: 446 SSSKKQKDERDRVAKKMEKLPSSFH 470

[Close]

BLAST of Bhi08G001218 vs. NCBI nr
Match: XP_022137407.1 (protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Momordica charantia])

HSP 1 Score: 115.5 bits (288), Expect = 9.9e-23
Identity = 60/82 (73.17%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 17  IQTEGTSAAIQMKVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKISSSS 76
           ++TEGTSAAIQMKVETSLE ++WAS++TKQVM+MNNHLQSRLLDMMRIRLF   K++S +
Sbjct: 407 MKTEGTSAAIQMKVETSLESQMWASRITKQVMEMNNHLQSRLLDMMRIRLFKSAKVNSPT 466

Query: 77  KKRKDERDRVARTREKRPLSFH 99
           KK K +RDRVA  REK+P SFH
Sbjct: 467 KKLKGKRDRVAGMREKQPSSFH 488

The following BLAST results are available for this feature:

BLAST of Bhi08G001218 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi08G001218 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi08G001218 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LR59\|A0A0A0LR59_CUCSA	1.6e-29	84.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050390 PE=4 SV=1	[more]
tr\|A0A1S4DU54\|A0A1S4DU54_CUCME	1.8e-28	82.35	protein ROOT INITIATION DEFECTIVE 3-like isoform X3 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A1S4DU43\|A0A1S4DU43_CUCME	1.8e-28	82.35	protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A1S4DUX3\|A0A1S4DUX3_CUCME	1.8e-28	82.35	protein ROOT INITIATION DEFECTIVE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A2I4EWM9\|A0A2I4EWM9_9ROSI	2.0e-11	58.73	protein ROOT INITIATION DEFECTIVE 3-like isoform X1 OS=Juglans regia OX=51240 GN...	[more]

BLAST of Bhi08G001218 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64400.1	2.4e-29	84.71	hypothetical protein Csa_1G050390 [Cucumis sativus]	[more]
XP_016899510.1	2.7e-28	82.35	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Cucumis melo]	[more]
XP_016899511.1	2.7e-28	82.35	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X2 [Cucumis melo]	[more]
XP_016899514.1	2.7e-28	82.35	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X3 [Cucumis melo]	[more]
XP_022137407.1	9.9e-23	73.17	protein ROOT INITIATION DEFECTIVE 3-like isoform X1 [Momordica charantia]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030174	regulation of DNA-dependent DNA replication initiation
biological_process	GO:0008150	biological_process
biological_process	GO:0006567	threonine catabolic process
biological_process	GO:0009165	nucleotide biosynthetic process
biological_process	GO:0006522	alanine metabolic process
biological_process	GO:0006526	arginine biosynthetic process
biological_process	GO:0006531	aspartate metabolic process
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0097344	Rix1 complex
cellular_component	GO:0005656	nuclear pre-replicative complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004055	argininosuccinate synthase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M001218	Bhi08M001218	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..98

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi08G001218	Csa1G050390	Cucumber (Chinese Long) v2	cuwgoB032
Bhi08G001218	MELO3C002353	Melon (DHL92) v3.5.1	mewgoB177
Bhi08G001218	ClCG03G003660	Watermelon (Charleston Gray)	wcgwgoB342
Bhi08G001218	CSPI01G09440	Wild cucumber (PI 183967)	cpiwgoB032
Bhi08G001218	Cucsa.392000	Cucumber (Gy14) v1	cgywgoB780
Bhi08G001218	CmaCh18G003250	Cucurbita maxima (Rimu)	cmawgoB0533
Bhi08G001218	Lsi02G004930	Bottle gourd (USVL1VR-Ls)	lsiwgoB242
Bhi08G001218	CsGy1G009490	Cucumber (Gy14) v2	cgybwgoB029
Bhi08G001218	CsaV3_1G009550	Cucumber (Chinese Long) v3	cucwgoB035
Bhi08G001218	Cla002610	Watermelon (97103) v1	wgowmB474
Bhi08G001218	Cla97C03G054800	Watermelon (97103) v2	wgowmbB472

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G001218	Cucumber (Gy14) v1	cgywgoB303
Bhi08G001218	Cucumber (Gy14) v2	cgybwgoB060
Bhi08G001218	Cucurbita maxima (Rimu)	cmawgoB0066
Bhi08G001218	Cucurbita maxima (Rimu)	cmawgoB0256
Bhi08G001218	Cucurbita moschata (Rifu)	cmowgoB0060
Bhi08G001218	Cucurbita moschata (Rifu)	cmowgoB0249
Bhi08G001218	Cucurbita moschata (Rifu)	cmowgoB0518
Bhi08G001218	Cucurbita pepo (Zucchini)	cpewgoB0048
Bhi08G001218	Cucurbita pepo (Zucchini)	cpewgoB0447
Bhi08G001218	Cucurbita pepo (Zucchini)	cpewgoB0654
Bhi08G001218	Wild cucumber (PI 183967)	cpiwgoB061
Bhi08G001218	Cucumber (Chinese Long) v3	cucwgoB062
Bhi08G001218	Cucumber (Chinese Long) v2	cuwgoB061
Bhi08G001218	Bottle gourd (USVL1VR-Ls)	lsiwgoB491
Bhi08G001218	Melon (DHL92) v3.6.1	medwgoB179
Bhi08G001218	Melon (DHL92) v3.6.1	medwgoB282
Bhi08G001218	Melon (DHL92) v3.5.1	mewgoB282
Bhi08G001218	Watermelon (Charleston Gray)	wcgwgoB530
Bhi08G001218	Watermelon (97103) v2	wgowmbB499
Bhi08G001218	Watermelon (97103) v1	wgowmB526
Bhi08G001218	Silver-seed gourd	carwgoB0445
Bhi08G001218	Silver-seed gourd	carwgoB0602
Bhi08G001218	Silver-seed gourd	carwgoB1177