Csa7G398200 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G398200
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 15411328 .. 15412440 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCTGATCACAAAACTAAATCAAGCTTTCACCTCGAGAGACCAGACAAACCAGCCAACAAGAAGAACGTCGAATTGGGTACCGTCGAAAACACTGGTGTTTTGCGGTTGGTCATGTGGGGTGGAGCCTTCGTTTTTGGATGTCTACTCATAGCTTCTACATTTAAGAAGAGCAAGAAGAGCATATCCCCTAAAACATGTCGAGAGGGTGTCTCAAATCTTGATGTTATTGGTGGTTTCAAAGAAAGTAGCACCCGAGATGATGACGATAAAGCTCGAAAAATGGAAGGATTACGACTTATTTTGTCTTCATCAACTGATATCATCAGTCATCCATGGTTAGAACTAAAAAGTCCATATATTTCCTTTGTTGAGTGAGTTCGAGAGGTGTGCGGTCATTTAATTTCTTCCCTTTAACATCCTACCTTTATTTGATTTCTACTTTGCAGTTAAAACAGTTCAAATTAATCAAAACTAACAATCGTATCAGCTAAAACTTGTCCATTATCCATGTAGTTAGGTGTTTTTTCATAAACGTTTTCACTTGATTTCATTCAAAATAAACTAAAACATAAAAATATTTAATTTTCTCCCCAAATCCTACCAAAGTAACCAAGAAAAATAAAAGTAATTCCTTTTCAAATAAGTGATCAAGAAACATGTTGTTGGAAGAAGAGAGGATGAAATACTAATATGCATGGAAGATCGTCTAAATTCAAAATTGATCTCATCTATGATAGTTCGTTTAATAATAATTTAGAGGTTTATTTAATATATATATTATCTTTTTGTAGTCACACGTCGTCAAAGATGTCAACGAATTCAATAGAAGACTCCGTAGATGAAAATTTAACTCTAACAACAGAACCCATTTTAGAAAAGAAAGAGGAGGATAATATTGTGATTATTATTTATGAAGAAGAAGAGTACACAAATTCAGAAGAATCTAAAGAAACTGCAACCCAGAAATATGATGAAAGCTCAGAAGTTCCACAAAGTTTTCCATCTACAGCATTATTTGATGAAGATGACAAAAATAGACCATCATCAACATCATCTTCCTCGTCTTTGTATTCATCCTCAAAGTTTTCCATCTACAGCATTATTTGA

mRNA sequence

ATGCCGCCTGATCACAAAACTAAATCAAGCTTTCACCTCGAGAGACCAGACAAACCAGCCAACAAGAAGAACGTCGAATTGGGTACCGTCGAAAACACTGGTGTTTTGCGGTTGGTCATGTGGGGTGGAGCCTTCGTTTTTGGATGTCTACTCATAGCTTCTACATTTAAGAAGAGCAAGAAGAGCATATCCCCTAAAACATGTCGAGAGGGTGTCTCAAATCTTGATGTTATTGGTGGTTTCAAAGAAAGTAGCACCCGAGATGATGACGATAAAGCTCGAAAAATGGAAGGATTACGACTTATTTTGTCTTCATCAACTGATATCATCAGTCATCCATGTCACACGTCGTCAAAGATGTCAACGAATTCAATAGAAGACTCCGTAGATGAAAATTTAACTCTAACAACAGAACCCATTTTAGAAAAGAAAGAGGAGGATAATATTGTGATTATTATTTATGAAGAAGAAGAGTACACAAATTCAGAAGAATCTAAAGAAACTGCAACCCAGAAATATGATGAAAGCTCAGAAGTTCCACAAAGTTTTCCATCTACAGCATTATTTGATGAAGATGACAAAAATAGACCATCATCAACATCATCTTCCTCGTCTTTGTATTCATCCTCAAAGTTTTCCATCTACAGCATTATTTGA

Coding sequence (CDS)

ATGCCGCCTGATCACAAAACTAAATCAAGCTTTCACCTCGAGAGACCAGACAAACCAGCCAACAAGAAGAACGTCGAATTGGGTACCGTCGAAAACACTGGTGTTTTGCGGTTGGTCATGTGGGGTGGAGCCTTCGTTTTTGGATGTCTACTCATAGCTTCTACATTTAAGAAGAGCAAGAAGAGCATATCCCCTAAAACATGTCGAGAGGGTGTCTCAAATCTTGATGTTATTGGTGGTTTCAAAGAAAGTAGCACCCGAGATGATGACGATAAAGCTCGAAAAATGGAAGGATTACGACTTATTTTGTCTTCATCAACTGATATCATCAGTCATCCATGTCACACGTCGTCAAAGATGTCAACGAATTCAATAGAAGACTCCGTAGATGAAAATTTAACTCTAACAACAGAACCCATTTTAGAAAAGAAAGAGGAGGATAATATTGTGATTATTATTTATGAAGAAGAAGAGTACACAAATTCAGAAGAATCTAAAGAAACTGCAACCCAGAAATATGATGAAAGCTCAGAAGTTCCACAAAGTTTTCCATCTACAGCATTATTTGATGAAGATGACAAAAATAGACCATCATCAACATCATCTTCCTCGTCTTTGTATTCATCCTCAAAGTTTTCCATCTACAGCATTATTTGA

Protein sequence

MPPDHKTKSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSKKSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLILSSSTDIISHPCHTSSKMSTNSIEDSVDENLTLTTEPILEKKEEDNIVIIIYEEEEYTNSEESKETATQKYDESSEVPQSFPSTALFDEDDKNRPSSTSSSSSLYSSSKFSIYSII*

Homology

[Close]

BLAST of Csa7G398200 vs. TrEMBL
Match: A0A0A0K656_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398200 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 5.0e-118
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1


Query: 1   MPPDHKTKSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSK 60
           MPPDHKTKSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSK
Sbjct: 1   MPPDHKTKSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSK 60

Query: 61  KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLILSSSTDIISHPCHTSSKM 120
           KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLILSSSTDIISHPCHTSSKM
Sbjct: 61  KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLILSSSTDIISHPCHTSSKM 120

Query: 121 STNSIEDSVDENLTLTTEPILEKKEEDNIVIIIYEEEEYTNSEESKETATQKYDESSEVP 180
           STNSIEDSVDENLTLTTEPILEKKEEDNIVIIIYEEEEYTNSEESKETATQKYDESSEVP
Sbjct: 121 STNSIEDSVDENLTLTTEPILEKKEEDNIVIIIYEEEEYTNSEESKETATQKYDESSEVP 180

Query: 181 QSFPSTALFDEDDKNRPSSTSSSSSLYSSSKFSIYSII 219
           QSFPSTALFDEDDKNRPSSTSSSSSLYSSSKFSIYSII
Sbjct: 181 QSFPSTALFDEDDKNRPSSTSSSSSLYSSSKFSIYSII 218

[Close]

BLAST of Csa7G398200 vs. NCBI nr
Match: gi|700189725|gb|KGN44958.1| (hypothetical protein Csa_7G398200 [Cucumis sativus])

HSP 1 Score: 431.8 bits (1109), Expect = 7.2e-118
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1


Query: 1   MPPDHKTKSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSK 60
           MPPDHKTKSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSK
Sbjct: 1   MPPDHKTKSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSK 60

Query: 61  KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLILSSSTDIISHPCHTSSKM 120
           KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLILSSSTDIISHPCHTSSKM
Sbjct: 61  KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLILSSSTDIISHPCHTSSKM 120

Query: 121 STNSIEDSVDENLTLTTEPILEKKEEDNIVIIIYEEEEYTNSEESKETATQKYDESSEVP 180
           STNSIEDSVDENLTLTTEPILEKKEEDNIVIIIYEEEEYTNSEESKETATQKYDESSEVP
Sbjct: 121 STNSIEDSVDENLTLTTEPILEKKEEDNIVIIIYEEEEYTNSEESKETATQKYDESSEVP 180

Query: 181 QSFPSTALFDEDDKNRPSSTSSSSSLYSSSKFSIYSII 219
           QSFPSTALFDEDDKNRPSSTSSSSSLYSSSKFSIYSII
Sbjct: 181 QSFPSTALFDEDDKNRPSSTSSSSSLYSSSKFSIYSII 218

[Close]

BLAST of Csa7G398200 vs. NCBI nr
Match: gi|778730411|ref|XP_011659778.1| (PREDICTED: putative uncharacterized protein DDB_G0281733 [Cucumis sativus])

HSP 1 Score: 417.9 bits (1073), Expect = 1.1e-113
Identity = 211/213 (99.06%), Postives = 211/213 (99.06%), Query Frame = 1


Query: 1   MPPDHKTKSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSK 60
           MPPDHKTKSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSK
Sbjct: 1   MPPDHKTKSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSK 60

Query: 61  KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLILSSSTDIISHPCHTSSKM 120
           KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLILSSSTDIISHPCHTSSKM
Sbjct: 61  KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLILSSSTDIISHPCHTSSKM 120

Query: 121 STNSIEDSVDENLTLTTEPILEKKEEDNIVIIIYEEEEYTNSEESKETATQKYDESSEVP 180
           STNSIEDSVDENLTLTTEPILEKKEEDNIVIIIYEEEEYTNSEESKETATQKYDESSEVP
Sbjct: 121 STNSIEDSVDENLTLTTEPILEKKEEDNIVIIIYEEEEYTNSEESKETATQKYDESSEVP 180

Query: 181 QSFPSTALFDEDDKNRPSSTSSSSSLYSSSKFS 214
           QSFPSTALFDEDDKNRPSSTSSSSSLYSSS  S
Sbjct: 181 QSFPSTALFDEDDKNRPSSTSSSSSLYSSSSSS 213

[Close]

BLAST of Csa7G398200 vs. NCBI nr
Match: gi|659101325|ref|XP_008451548.1| (PREDICTED: protein gar2-like [Cucumis melo])

HSP 1 Score: 303.1 bits (775), Expect = 3.8e-79
Identity = 168/216 (77.78%), Postives = 180/216 (83.33%), Query Frame = 1


Query: 1   MPPDHKTKSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSK 60
           MPPDH+ KSSFHLERP+KP NKKNVELGTVEN GVLRLVMWGGAFVFGCLLIASTFKKSK
Sbjct: 5   MPPDHE-KSSFHLERPNKPTNKKNVELGTVENNGVLRLVMWGGAFVFGCLLIASTFKKSK 64

Query: 61  K-SISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLILSSSTDIISHPCHTSSK 120
           K + SPK  REG S+LDVI           DDKA++MEGLRL+LSSSTDIISH CHTSSK
Sbjct: 65  KITTSPKRSREGDSDLDVIA----------DDKAQEMEGLRLVLSSSTDIISHLCHTSSK 124

Query: 121 MSTNSIEDSVDENLTLTTEPILEKK-EEDNIVIIIYEEEEYTNSE-ESKETATQKYDESS 180
           M TNSIEDS  ENL +TTE ILEKK +E+NIV+IIYEEEEYTNSE +S E ATQKYDESS
Sbjct: 125 MLTNSIEDSEYENLPITTESILEKKDQEENIVVIIYEEEEYTNSELDSIENATQKYDESS 184

Query: 181 EVPQSFPSTALFDEDDKNRPSSTSSSSSLYSSSKFS 214
            V QSFPSTALFDE DK RPSSTSSSSS YSSS  S
Sbjct: 185 NVAQSFPSTALFDEYDKKRPSSTSSSSSSYSSSSLS 209

The following BLAST results are available for this feature:

BLAST of Csa7G398200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K656_CUCSA	5.0e-118	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398200 PE=4 SV=1	[more]

BLAST of Csa7G398200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189725\|gb\|KGN44958.1\|	7.2e-118	100.00	hypothetical protein Csa_7G398200 [Cucumis sativus]	[more]
gi\|778730411\|ref\|XP_011659778.1\|	1.1e-113	99.06	PREDICTED: putative uncharacterized protein DDB_G0281733 [Cucumis sativus]	[more]
gi\|659101325\|ref\|XP_008451548.1\|	3.8e-79	77.78	PREDICTED: protein gar2-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G398200.1	Csa7G398200.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G398200	Cla015082	Watermelon (97103) v1	cuwmB560
Csa7G398200	MELO3C015982	Melon (DHL92) v3.5.1	cumeB532
Csa7G398200	ClCG09G005730	Watermelon (Charleston Gray)	cuwcgB521
Csa7G398200	Lsi02G024180	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G398200	MELO3C015982.2	Melon (DHL92) v3.6.1	cumedB511
Csa7G398200	Bhi09G000736	Wax gourd	cuwgoB691
Csa7G398200	CSPI07G17640	Wild cucumber (PI 183967)	cpicuB354
Csa7G398200	CmaCh17G010730	Cucurbita maxima (Rimu)	cmacuB388
Csa7G398200	CmoCh17G010450	Cucurbita moschata (Rifu)	cmocuB378
Csa7G398200	Cp4.1LG12g05680	Cucurbita pepo (Zucchini)	cpecuB161
Csa7G398200	CsGy7G016080	Cucumber (Gy14) v2	cgybcuB323
Csa7G398200	Carg07161	Silver-seed gourd	carcuB0119

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G398200	Wax gourd	cuwgoB650
Csa7G398200	Wax gourd	cuwgoB657
Csa7G398200	Cucumber (Chinese Long) v2	cucuB149
Csa7G398200	Cucumber (Gy14) v1	cgycuB312
Csa7G398200	Cucurbita maxima (Rimu)	cmacuB914
Csa7G398200	Cucurbita moschata (Rifu)	cmocuB900
Csa7G398200	Watermelon (Charleston Gray)	cuwcgB526
Csa7G398200	Watermelon (Charleston Gray)	cuwcgB531
Csa7G398200	Watermelon (97103) v1	cuwmB568
Csa7G398200	Watermelon (97103) v1	cuwmB588
Csa7G398200	Watermelon (97103) v1	cuwmB574
Csa7G398200	Cucurbita pepo (Zucchini)	cpecuB343
Csa7G398200	Bottle gourd (USVL1VR-Ls)	culsiB516
Csa7G398200	Silver-seed gourd	carcuB0594
Csa7G398200	Silver-seed gourd	carcuB0833
Csa7G398200	Watermelon (97103) v2	cuwmbB517
Csa7G398200	Watermelon (97103) v2	cuwmbB539
Csa7G398200	Watermelon (97103) v2	cuwmbB565
Csa7G398200	Watermelon (97103) v2	cuwmbB572