Cp4.1LG12g05680 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG12g05680
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 7938929 .. 7939872 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTCCCAAAGATATTAACTGCCTTCCACGTCTTCCTCCTTTCCCAATCGATGATATCAATGCCGTTCGATCGGGAAAAATTAAGCTTGAGCTCGGACAGCCTATCCCGATGGGTCACGTGGGGTGGTGGAGCTTTCGTTTTTGGTTGTTTACTCGCAGTTTCTACGTTCAAGATGAGAAAGAATATCATAACCCCTCCTAAAAGGGGTCGAGACGATGATTCAAATCTCGATGTTGGTTTTGGAGAAAGTACTCGTTGCGTCGACGAAGAAACTCGACAAAAGGATGAACTGCAACTGTTTCGTCAGTCTTCATCAACTGATCTCATCAGCCATTCACGGTTAGGACTAAAAAACAATATCGATATTGTAATAATGACTCATTTTTATTATTGCTTATTTGTGATATTATGTTGTAGCCACCCAACGTCGCAAATATTGGTAAAATATTCTCCACCGGAAGACTCTGTCTTTGACGAAACTCAAACCGTAACGACGAAATCCGTCCTAGAAAAGAATGACGAAGAAAATGTTGTGGTTAATAATTATGACGAAGAAGAGTATCCAGATTCAGAAAAATCCGTAGAAAATGAAGTTGCAGAGAGTGTTTCATCCGAAGAATTTGATGAAGCCACTTGGCTTATTGGGTGGACAGATAAATCATCATCATATTCATTAACATCGTCGTCGTCATTAGAAGAAGCTTTATCTCAGGGAGTTTTTTCTGGAGAAGATCGAAAGAGTTGACGAGAAAACGATATAATTATATTTATTGACGATGTAAATTTTGTTTTGTTTTTATATTTGAATAAAAAAAAATTATTAATTATTTTTTAATTTAAATATAAATAAAACAAAAACCCATAACTTTAGGGGAATTTTATAGAATTTAATCCATTTTACATCAATATTAATAGGTACAAGCTTGGTCGTATTAATGTTATAC

mRNA sequence

GCTCCCAAAGATATTAACTGCCTTCCACGTCTTCCTCCTTTCCCAATCGATGATATCAATGCCGTTCGATCGGGAAAAATTAAGCTTGAGCTCGGACAGCCTATCCCGATGGGTCACGTGGGGTGGTGGAGCTTTCGTTTTTGGTTGTTTACTCGCAGTTTCTACGTTCAAGATGAGAAAGAATATCATAACCCCTCCTAAAAGGGGTCGAGACGATGATTCAAATCTCGATGTTGGTTTTGGAGAAAGTACTCGTTGCGTCGACGAAGAAACTCGACAAAAGGATGAACTGCAACTGTTTCGTCAGTCTTCATCAACTGATCTCATCAGCCATTCACGGTTAGGACTAAAAAACAATATCGATATTGTAATAATGACTCATTTTTATTATTGCTTATTTGTGATATTATGTTGTAGCCACCCAACGTCGCAAATATTGGTAAAATATTCTCCACCGGAAGACTCTGTCTTTGACGAAACTCAAACCGTAACGACGAAATCCGTCCTAGAAAAGAATGACGAAGAAAATGTTGTGGTTAATAATTATGACGAAGAAGAGTATCCAGATTCAGAAAAATCCGTAGAAAATGAAGTTGCAGAGAGTGTTTCATCCGAAGAATTTGATGAAGCCACTTGGCTTATTGGGTGGACAGATAAATCATCATCATATTCATTAACATCGTCGTCGTCATTAGAAGAAGCTTTATCTCAGGGAGTACAAGCTTGGTCGTATTAATGTTATAC

Coding sequence (CDS)

ATGATATCAATGCCGTTCGATCGGGAAAAATTAAGCTTGAGCTCGGACAGCCTATCCCGATGGGTCACGTGGGGTGGTGGAGCTTTCGTTTTTGGTTGTTTACTCGCAGTTTCTACGTTCAAGATGAGAAAGAATATCATAACCCCTCCTAAAAGGGGTCGAGACGATGATTCAAATCTCGATGTTGGTTTTGGAGAAAGTACTCGTTGCGTCGACGAAGAAACTCGACAAAAGGATGAACTGCAACTGTTTCGTCAGTCTTCATCAACTGATCTCATCAGCCATTCACGGTTAGGACTAAAAAACAATATCGATATTGTAATAATGACTCATTTTTATTATTGCTTATTTGTGATATTATGTTGTAGCCACCCAACGTCGCAAATATTGGTAAAATATTCTCCACCGGAAGACTCTGTCTTTGACGAAACTCAAACCGTAACGACGAAATCCGTCCTAGAAAAGAATGACGAAGAAAATGTTGTGGTTAATAATTATGACGAAGAAGAGTATCCAGATTCAGAAAAATCCGTAGAAAATGAAGTTGCAGAGAGTGTTTCATCCGAAGAATTTGATGAAGCCACTTGGCTTATTGGGTGGACAGATAAATCATCATCATATTCATTAACATCGTCGTCGTCATTAGAAGAAGCTTTATCTCAGGGAGTACAAGCTTGGTCGTATTAA

Protein sequence

MISMPFDREKLSLSSDSLSRWVTWGGGAFVFGCLLAVSTFKMRKNIITPPKRGRDDDSNLDVGFGESTRCVDEETRQKDELQLFRQSSSTDLISHSRLGLKNNIDIVIMTHFYYCLFVILCCSHPTSQILVKYSPPEDSVFDETQTVTTKSVLEKNDEENVVVNNYDEEEYPDSEKSVENEVAESVSSEEFDEATWLIGWTDKSSSYSLTSSSSLEEALSQGVQAWSY
BLAST of Cp4.1LG12g05680 vs. TrEMBL
Match: A0A0A0K656_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398200 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.7e-15
Identity = 83/210 (39.52%), Postives = 114/210 (54.29%), Query Frame = 1

Query: 12  SLSSDSLSRWVTWGGGAFVFGCLLAVSTFKMRKNIITPPKRGRDDDSNLDV--GFGES-T 71
           ++ +  + R V WGG AFVFGCLL  STFK  K  I+P K  R+  SNLDV  GF ES T
Sbjct: 29  TVENTGVLRLVMWGG-AFVFGCLLIASTFKKSKKSISP-KTCREGVSNLDVIGGFKESST 88

Query: 72  RCVDEETRQKDELQLFRQSSSTDLISHSRLGLKNNIDIVIMTHFYYCLFVILCCSHPTSQ 131
           R  D++ R+ + L+L   SSSTD+ISH                            H +S+
Sbjct: 89  RDDDDKARKMEGLRLIL-SSSTDIISHP--------------------------CHTSSK 148

Query: 132 ILVKYSPPEDSVFDETQTVTTKSVLEKNDEENVVVNNYDEEEYPDSEKSVENEVAESVSS 191
           +    +  EDSV DE  T+TT+ +LEK +E+N+V+  Y+EEEY +SE+S E    +   S
Sbjct: 149 MST--NSIEDSV-DENLTLTTEPILEKKEEDNIVIIIYEEEEYTNSEESKETATQKYDES 206

Query: 192 EEFDE---ATWLIGWTDKSSSYSLTSSSSL 216
            E  +   +T L    DK+   S +SSSSL
Sbjct: 209 SEVPQSFPSTALFDEDDKNRPSSTSSSSSL 206

BLAST of Cp4.1LG12g05680 vs. NCBI nr
Match: gi|778730411|ref|XP_011659778.1| (PREDICTED: putative uncharacterized protein DDB_G0281733 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 4.1e-15
Identity = 84/215 (39.07%), Postives = 116/215 (53.95%), Query Frame = 1

Query: 12  SLSSDSLSRWVTWGGGAFVFGCLLAVSTFKMRKNIITPPKRGRDDDSNLDV--GFGES-T 71
           ++ +  + R V WGG AFVFGCLL  STFK  K  I+P K  R+  SNLDV  GF ES T
Sbjct: 29  TVENTGVLRLVMWGG-AFVFGCLLIASTFKKSKKSISP-KTCREGVSNLDVIGGFKESST 88

Query: 72  RCVDEETRQKDELQLFRQSSSTDLISHSRLGLKNNIDIVIMTHFYYCLFVILCCSHPTSQ 131
           R  D++ R+ + L+L   SSSTD+ISH                            H +S+
Sbjct: 89  RDDDDKARKMEGLRLIL-SSSTDIISHP--------------------------CHTSSK 148

Query: 132 ILVKYSPPEDSVFDETQTVTTKSVLEKNDEENVVVNNYDEEEYPDSEKSVENEVAESVSS 191
           +    +  EDSV DE  T+TT+ +LEK +E+N+V+  Y+EEEY +SE+S E    +   S
Sbjct: 149 MST--NSIEDSV-DENLTLTTEPILEKKEEDNIVIIIYEEEEYTNSEESKETATQKYDES 208

Query: 192 EEFDE---ATWLIGWTDKSSSYSLTSSSSLEEALS 221
            E  +   +T L    DK+   S +SSSSL  + S
Sbjct: 209 SEVPQSFPSTALFDEDDKNRPSSTSSSSSLYSSSS 211

BLAST of Cp4.1LG12g05680 vs. NCBI nr
Match: gi|700189725|gb|KGN44958.1| (hypothetical protein Csa_7G398200 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 5.3e-15
Identity = 83/210 (39.52%), Postives = 114/210 (54.29%), Query Frame = 1

Query: 12  SLSSDSLSRWVTWGGGAFVFGCLLAVSTFKMRKNIITPPKRGRDDDSNLDV--GFGES-T 71
           ++ +  + R V WGG AFVFGCLL  STFK  K  I+P K  R+  SNLDV  GF ES T
Sbjct: 29  TVENTGVLRLVMWGG-AFVFGCLLIASTFKKSKKSISP-KTCREGVSNLDVIGGFKESST 88

Query: 72  RCVDEETRQKDELQLFRQSSSTDLISHSRLGLKNNIDIVIMTHFYYCLFVILCCSHPTSQ 131
           R  D++ R+ + L+L   SSSTD+ISH                            H +S+
Sbjct: 89  RDDDDKARKMEGLRLIL-SSSTDIISHP--------------------------CHTSSK 148

Query: 132 ILVKYSPPEDSVFDETQTVTTKSVLEKNDEENVVVNNYDEEEYPDSEKSVENEVAESVSS 191
           +    +  EDSV DE  T+TT+ +LEK +E+N+V+  Y+EEEY +SE+S E    +   S
Sbjct: 149 MST--NSIEDSV-DENLTLTTEPILEKKEEDNIVIIIYEEEEYTNSEESKETATQKYDES 206

Query: 192 EEFDE---ATWLIGWTDKSSSYSLTSSSSL 216
            E  +   +T L    DK+   S +SSSSL
Sbjct: 209 SEVPQSFPSTALFDEDDKNRPSSTSSSSSL 206

BLAST of Cp4.1LG12g05680 vs. NCBI nr
Match: gi|659101325|ref|XP_008451548.1| (PREDICTED: protein gar2-like [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 9.1e-15
Identity = 94/251 (37.45%), Postives = 127/251 (50.60%), Query Frame = 1

Query: 1   MISMPFDREKLS-------------------LSSDSLSRWVTWGGGAFVFGCLLAVSTFK 60
           +ISMP D EK S                   + ++ + R V WGG AFVFGCLL  STFK
Sbjct: 2   IISMPPDHEKSSFHLERPNKPTNKKNVELGTVENNGVLRLVMWGG-AFVFGCLLIASTFK 61

Query: 61  MRKNIITPPKRGRDDDSNLDVGFGESTRCVDEETRQKDELQLFRQSSSTDLISHSRLGLK 120
             K I T PKR R+ DS+LDV         D++ ++ + L+L   SSSTD+ISH      
Sbjct: 62  KSKKITTSPKRSREGDSDLDV-------IADDKAQEMEGLRLVL-SSSTDIISH------ 121

Query: 121 NNIDIVIMTHFYYCLFVILCCSHPTSQILVKYSPPEDSVFDETQTVTTKSVL-EKNDEEN 180
                             LC  H +S++L   +  EDS + E   +TT+S+L +K+ EEN
Sbjct: 122 ------------------LC--HTSSKMLT--NSIEDSEY-ENLPITTESILEKKDQEEN 181

Query: 181 VVVNNYDEEEYPDSE-KSVEN---EVAESVSSEEFDEATWLIGWTDK------SSSYSLT 222
           +VV  Y+EEEY +SE  S+EN   +  ES +  +   +T L    DK      SSS S  
Sbjct: 182 IVVIIYEEEEYTNSELDSIENATQKYDESSNVAQSFPSTALFDEYDKKRPSSTSSSSSSY 214

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K656_CUCSA3.7e-1539.52Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398200 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778730411|ref|XP_011659778.1|4.1e-1539.07PREDICTED: putative uncharacterized protein DDB_G0281733 [Cucumis sativus][more]
gi|700189725|gb|KGN44958.1|5.3e-1539.52hypothetical protein Csa_7G398200 [Cucumis sativus][more]
gi|659101325|ref|XP_008451548.1|9.1e-1537.45PREDICTED: protein gar2-like [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g05680.1Cp4.1LG12g05680.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g05680CmaCh17G010730Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g05680CmoCh17G010450Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g05680Csa7G398200Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g05680MELO3C015982.2Melon (DHL92) v3.6.1cpemedB145
Cp4.1LG12g05680Carg07161Silver-seed gourdcarcpeB0158
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g05680Silver-seed gourdcarcpeB0801
Cp4.1LG12g05680Silver-seed gourdcarcpeB1070
Cp4.1LG12g05680Silver-seed gourdcarcpeB1143
Cp4.1LG12g05680Cucumber (Chinese Long) v3cpecucB0162
Cp4.1LG12g05680Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g05680Wax gourdcpewgoB0171
Cp4.1LG12g05680Wax gourdcpewgoB0193
Cp4.1LG12g05680Wax gourdcpewgoB0210
Cp4.1LG12g05680Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g05680Cucurbita pepo (Zucchini)cpecpeB193
Cp4.1LG12g05680Cucumber (Gy14) v1cgycpeB0185
Cp4.1LG12g05680Cucumber (Gy14) v1cgycpeB0579
Cp4.1LG12g05680Cucumber (Gy14) v1cgycpeB0669
Cp4.1LG12g05680Cucurbita maxima (Rimu)cmacpeB260
Cp4.1LG12g05680Cucurbita maxima (Rimu)cmacpeB465
Cp4.1LG12g05680Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g05680Cucurbita moschata (Rifu)cmocpeB224
Cp4.1LG12g05680Cucurbita moschata (Rifu)cmocpeB425
Cp4.1LG12g05680Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g05680Wild cucumber (PI 183967)cpecpiB140
Cp4.1LG12g05680Wild cucumber (PI 183967)cpecpiB141
Cp4.1LG12g05680Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g05680Cucumber (Chinese Long) v2cpecuB139
Cp4.1LG12g05680Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g05680Bottle gourd (USVL1VR-Ls)cpelsiB116
Cp4.1LG12g05680Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g05680Watermelon (Charleston Gray)cpewcgB132
Cp4.1LG12g05680Watermelon (Charleston Gray)cpewcgB134
Cp4.1LG12g05680Watermelon (97103) v1cpewmB131
Cp4.1LG12g05680Watermelon (97103) v1cpewmB138
Cp4.1LG12g05680Watermelon (97103) v1cpewmB141
Cp4.1LG12g05680Watermelon (97103) v1cpewmB153
Cp4.1LG12g05680Melon (DHL92) v3.5.1cpemeB118
Cp4.1LG12g05680Melon (DHL92) v3.5.1cpemeB144
Cp4.1LG12g05680Melon (DHL92) v3.5.1cpemeB146
Cp4.1LG12g05680Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g05680Melon (DHL92) v3.6.1cpemedB172