CmaCh17G010730 (gene) Cucurbita maxima (Rimu)

NameCmaCh17G010730
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr17 : 7645515 .. 7646343 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTCCACCTCTCCCTCCTTCCCCAATCGATCATATCAATGCCGTTCGATCGGGAAAAATTAAGCTTGAGATCGGACAAGCTATCGCGGTGGGTCACGTGGGGTGGTGGTGTCTTCGTTTTTGCCTGTTTACTCGTAGTTTCTACGTTCAAGATGAGCAAGAAGATCATAACCTCTCCTAAAACGGGTCGAGACGATGATTCAAATCTCGATGTTGATAGTTTTGGAGAAAGTACTCGTTGCGTAGACGAAGAAACTCGACAAGAGGATGAACGACAATGGTTTCGTCAGTCTTCATCAACTGATCTCATCAGCCATTCATGGTTAGGACTAAAAAAACAATATCGATATTGTAATAATGATTCGTTTTTATCATTGCTTATTTGTGATATTATGTTGTAGCTACCCAACGTCGCAAATGTTGGTAAAATATTCTCTGCTAGAAGACTCTGTCATTGATGAAACTCAAACCCTAACGACGAAATCCATCCCAGAAAAGAATGACGAAGAAAATATTGTGGTTAATAATTATGAAGAAGAAGAGTATACAGATTCAGAAAAATCAGTTGAAAATGGAGTTGCAGAGAGTTTTTCATCAGAAGAATTTGATGAAGCCACTTGGCTAATTGGATGGACAGATAAATCATCATCGTATTCATTAACATCGTCGTCATCATTAGAAGAAGCTTTATCTCAAAAAGACGATCGGAAGAGTGGACGAAAACGATATAATTATATTTATTGATGATGTAAATTTTGTTTTGTTTTTATATTTGAATAAAAAAATTATTAATTATTTTTTACTCCTTAAAAAAAAAATTAGAAGAGAA

mRNA sequence

CCTTCCACCTCTCCCTCCTTCCCCAATCGATCATATCAATGCCGTTCGATCGGGAAAAATTAAGCTTGAGATCGGACAAGCTATCGCGGTGGGTCACGTGGGGTGGTGGTGTCTTCGTTTTTGCCTGTTTACTCGTAGTTTCTACGTTCAAGATGAGCAAGAAGATCATAACCTCTCCTAAAACGGGTCGAGACGATGATTCAAATCTCGATGTTGATAGTTTTGGAGAAAGTACTCGTTGCGTAGACGAAGAAACTCGACAAGAGGATGAACGACAATGGTTTCGTCAGTCTTCATCAACTGATCTCATCAGCCATTCATGCTACCCAACGTCGCAAATGTTGGTAAAATATTCTCTGCTAGAAGACTCTGTCATTGATGAAACTCAAACCCTAACGACGAAATCCATCCCAGAAAAGAATGACGAAGAAAATATTGTGGTTAATAATTATGAAGAAGAAGAGTATACAGATTCAGAAAAATCAGTTGAAAATGGAGTTGCAGAGAGTTTTTCATCAGAAGAATTTGATGAAGCCACTTGGCTAATTGGATGGACAGATAAATCATCATCGTATTCATTAACATCGTCGTCATCATTAGAAGAAGCTTTATCTCAAAAAGACGATCGGAAGAGTGGACGAAAACGATATAATTATATTTATTGATGATGTAAATTTTGTTTTGTTTTTATATTTGAATAAAAAAATTATTAATTATTTTTTACTCCTTAAAAAAAAAATTAGAAGAGAA

Coding sequence (CDS)

ATGCCGTTCGATCGGGAAAAATTAAGCTTGAGATCGGACAAGCTATCGCGGTGGGTCACGTGGGGTGGTGGTGTCTTCGTTTTTGCCTGTTTACTCGTAGTTTCTACGTTCAAGATGAGCAAGAAGATCATAACCTCTCCTAAAACGGGTCGAGACGATGATTCAAATCTCGATGTTGATAGTTTTGGAGAAAGTACTCGTTGCGTAGACGAAGAAACTCGACAAGAGGATGAACGACAATGGTTTCGTCAGTCTTCATCAACTGATCTCATCAGCCATTCATGCTACCCAACGTCGCAAATGTTGGTAAAATATTCTCTGCTAGAAGACTCTGTCATTGATGAAACTCAAACCCTAACGACGAAATCCATCCCAGAAAAGAATGACGAAGAAAATATTGTGGTTAATAATTATGAAGAAGAAGAGTATACAGATTCAGAAAAATCAGTTGAAAATGGAGTTGCAGAGAGTTTTTCATCAGAAGAATTTGATGAAGCCACTTGGCTAATTGGATGGACAGATAAATCATCATCGTATTCATTAACATCGTCGTCATCATTAGAAGAAGCTTTATCTCAAAAAGACGATCGGAAGAGTGGACGAAAACGATATAATTATATTTATTGA

Protein sequence

MPFDREKLSLRSDKLSRWVTWGGGVFVFACLLVVSTFKMSKKIITSPKTGRDDDSNLDVDSFGESTRCVDEETRQEDERQWFRQSSSTDLISHSCYPTSQMLVKYSLLEDSVIDETQTLTTKSIPEKNDEENIVVNNYEEEEYTDSEKSVENGVAESFSSEEFDEATWLIGWTDKSSSYSLTSSSSLEEALSQKDDRKSGRKRYNYIY
BLAST of CmaCh17G010730 vs. TrEMBL
Match: A0A0A0K656_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398200 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.0e-20
Identity = 85/175 (48.57%), Postives = 109/175 (62.29%), Query Frame = 1

Query: 17  RWVTWGGGVFVFACLLVVSTFKMSKKIITSPKTGRDDDSNLDV-DSFGESTRCVDEETRQ 76
           R V WGG  FVF CLL+ STFK SKK I SPKT R+  SNLDV   F ES+   D++  +
Sbjct: 37  RLVMWGGA-FVFGCLLIASTFKKSKKSI-SPKTCREGVSNLDVIGGFKESSTRDDDDKAR 96

Query: 77  EDERQWFRQSSSTDLISHSCYPTSQMLVKYSLLEDSVIDETQTLTTKSIPEKNDEENIVV 136
           + E      SSSTD+ISH C+ +S+M    + +EDSV DE  TLTT+ I EK +E+NIV+
Sbjct: 97  KMEGLRLILSSSTDIISHPCHTSSKM--STNSIEDSV-DENLTLTTEPILEKKEEDNIVI 156

Query: 137 NNYEEEEYTDSEKSVENGVAESFSSEEFDE---ATWLIGWTDKSSSYSLTSSSSL 188
             YEEEEYT+SE+S E    +   S E  +   +T L    DK+   S +SSSSL
Sbjct: 157 IIYEEEEYTNSEESKETATQKYDESSEVPQSFPSTALFDEDDKNRPSSTSSSSSL 206

BLAST of CmaCh17G010730 vs. NCBI nr
Match: gi|778730411|ref|XP_011659778.1| (PREDICTED: putative uncharacterized protein DDB_G0281733 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 2.3e-20
Identity = 86/180 (47.78%), Postives = 111/180 (61.67%), Query Frame = 1

Query: 17  RWVTWGGGVFVFACLLVVSTFKMSKKIITSPKTGRDDDSNLDV-DSFGESTRCVDEETRQ 76
           R V WGG  FVF CLL+ STFK SKK I SPKT R+  SNLDV   F ES+   D++  +
Sbjct: 37  RLVMWGGA-FVFGCLLIASTFKKSKKSI-SPKTCREGVSNLDVIGGFKESSTRDDDDKAR 96

Query: 77  EDERQWFRQSSSTDLISHSCYPTSQMLVKYSLLEDSVIDETQTLTTKSIPEKNDEENIVV 136
           + E      SSSTD+ISH C+ +S+M    + +EDSV DE  TLTT+ I EK +E+NIV+
Sbjct: 97  KMEGLRLILSSSTDIISHPCHTSSKM--STNSIEDSV-DENLTLTTEPILEKKEEDNIVI 156

Query: 137 NNYEEEEYTDSEKSVENGVAESFSSEEFDE---ATWLIGWTDKSSSYSLTSSSSLEEALS 193
             YEEEEYT+SE+S E    +   S E  +   +T L    DK+   S +SSSSL  + S
Sbjct: 157 IIYEEEEYTNSEESKETATQKYDESSEVPQSFPSTALFDEDDKNRPSSTSSSSSLYSSSS 211

BLAST of CmaCh17G010730 vs. NCBI nr
Match: gi|700189725|gb|KGN44958.1| (hypothetical protein Csa_7G398200 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 2.9e-20
Identity = 85/175 (48.57%), Postives = 109/175 (62.29%), Query Frame = 1

Query: 17  RWVTWGGGVFVFACLLVVSTFKMSKKIITSPKTGRDDDSNLDV-DSFGESTRCVDEETRQ 76
           R V WGG  FVF CLL+ STFK SKK I SPKT R+  SNLDV   F ES+   D++  +
Sbjct: 37  RLVMWGGA-FVFGCLLIASTFKKSKKSI-SPKTCREGVSNLDVIGGFKESSTRDDDDKAR 96

Query: 77  EDERQWFRQSSSTDLISHSCYPTSQMLVKYSLLEDSVIDETQTLTTKSIPEKNDEENIVV 136
           + E      SSSTD+ISH C+ +S+M    + +EDSV DE  TLTT+ I EK +E+NIV+
Sbjct: 97  KMEGLRLILSSSTDIISHPCHTSSKM--STNSIEDSV-DENLTLTTEPILEKKEEDNIVI 156

Query: 137 NNYEEEEYTDSEKSVENGVAESFSSEEFDE---ATWLIGWTDKSSSYSLTSSSSL 188
             YEEEEYT+SE+S E    +   S E  +   +T L    DK+   S +SSSSL
Sbjct: 157 IIYEEEEYTNSEESKETATQKYDESSEVPQSFPSTALFDEDDKNRPSSTSSSSSL 206

BLAST of CmaCh17G010730 vs. NCBI nr
Match: gi|659101325|ref|XP_008451548.1| (PREDICTED: protein gar2-like [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 91/201 (45.27%), Postives = 119/201 (59.20%), Query Frame = 1

Query: 9   SLRSDKLSRWVTWGGGVFVFACLLVVSTFKMSKKIITSPKTGRDDDSNLDVDSFGESTRC 68
           ++ ++ + R V WGG  FVF CLL+ STFK SKKI TSPK  R+ DS+LDV         
Sbjct: 32  TVENNGVLRLVMWGGA-FVFGCLLIASTFKKSKKITTSPKRSREGDSDLDV--------- 91

Query: 69  VDEETRQEDERQWFRQSSSTDLISHSCYPTSQMLVKYSLLEDSVIDETQTLTTKSIPEKN 128
           + ++  QE E      SSSTD+ISH C+ +S+ML   + +EDS   E   +TT+SI EK 
Sbjct: 92  IADDKAQEMEGLRLVLSSSTDIISHLCHTSSKMLT--NSIEDSEY-ENLPITTESILEKK 151

Query: 129 D-EENIVVNNYEEEEYTDSE-KSVEN---------GVAESFSS----EEFDEATWLIGWT 188
           D EENIVV  YEEEEYT+SE  S+EN          VA+SF S    +E+D+       +
Sbjct: 152 DQEENIVVIIYEEEEYTNSELDSIENATQKYDESSNVAQSFPSTALFDEYDKKR----PS 211

Query: 189 DKSSSYSLTSSSSLEEALSQK 195
             SSS S  SSSSL   LS++
Sbjct: 212 STSSSSSSYSSSSLSSTLSEE 215

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K656_CUCSA2.0e-2048.57Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398200 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778730411|ref|XP_011659778.1|2.3e-2047.78PREDICTED: putative uncharacterized protein DDB_G0281733 [Cucumis sativus][more]
gi|700189725|gb|KGN44958.1|2.9e-2048.57hypothetical protein Csa_7G398200 [Cucumis sativus][more]
gi|659101325|ref|XP_008451548.1|1.1e-1945.27PREDICTED: protein gar2-like [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G010730.1CmaCh17G010730.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..30
score:

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G010730Cucurbita maxima (Rimu)cmacmaB250
CmaCh17G010730Cucurbita maxima (Rimu)cmacmaB360
CmaCh17G010730Cucurbita maxima (Rimu)cmacmaB382
CmaCh17G010730Cucumber (Gy14) v1cgycmaB0198
CmaCh17G010730Cucumber (Gy14) v1cgycmaB0606
CmaCh17G010730Cucumber (Gy14) v1cgycmaB0713
CmaCh17G010730Cucurbita moschata (Rifu)cmacmoB351
CmaCh17G010730Cucurbita moschata (Rifu)cmacmoB354
CmaCh17G010730Cucurbita moschata (Rifu)cmacmoB374
CmaCh17G010730Wild cucumber (PI 183967)cmacpiB367
CmaCh17G010730Wild cucumber (PI 183967)cmacpiB369
CmaCh17G010730Cucumber (Chinese Long) v2cmacuB363
CmaCh17G010730Cucumber (Chinese Long) v2cmacuB365
CmaCh17G010730Melon (DHL92) v3.5.1cmameB320
CmaCh17G010730Melon (DHL92) v3.5.1cmameB347
CmaCh17G010730Watermelon (Charleston Gray)cmawcgB306
CmaCh17G010730Watermelon (Charleston Gray)cmawcgB314
CmaCh17G010730Watermelon (97103) v1cmawmB345
CmaCh17G010730Watermelon (97103) v1cmawmB328
CmaCh17G010730Watermelon (97103) v1cmawmB334
CmaCh17G010730Watermelon (97103) v1cmawmB336
CmaCh17G010730Cucurbita pepo (Zucchini)cmacpeB376
CmaCh17G010730Cucurbita pepo (Zucchini)cmacpeB410
CmaCh17G010730Bottle gourd (USVL1VR-Ls)cmalsiB351
CmaCh17G010730Melon (DHL92) v3.6.1cmamedB400
CmaCh17G010730Melon (DHL92) v3.6.1cmamedB401
CmaCh17G010730Silver-seed gourdcarcmaB0787
CmaCh17G010730Silver-seed gourdcarcmaB1058
CmaCh17G010730Silver-seed gourdcarcmaB1133
CmaCh17G010730Cucumber (Chinese Long) v3cmacucB0437
CmaCh17G010730Watermelon (97103) v2cmawmbB360
CmaCh17G010730Watermelon (97103) v2cmawmbB368
CmaCh17G010730Watermelon (97103) v2cmawmbB386
CmaCh17G010730Watermelon (97103) v2cmawmbB393
CmaCh17G010730Wax gourdcmawgoB0454
CmaCh17G010730Wax gourdcmawgoB0478
CmaCh17G010730Wax gourdcmawgoB0494