CSPI07G17640 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G17640
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr7 : 15937933 .. 15939157 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCCGATCACAAAACTAAATCAAGCTTTCACCTCGAGAGACTAGACAAACCAGCCAACAAGAAGAACGTCGAATTGGGTACCGTCGAAAACACTGGTGTTTTGCGGTTGGTCATGTGGGGTGAAGCCTTCGTTTTTGGATGTCTACTCATAGCTTCTACATTTAAGAAGAGCAAGAAGAGCATATCCCCTAAAACATGTCGAGAGGGTGTCTCAAATCTTGATGTTATTGGTGGTTTCAAAGAAAGTAGTACCCGAGATGATGACGATAAAGCTCGAAAAATGGAAGGATTACGACTTCTTTTGTCTTCATCAACTGATATCATCAGTCATCCATGGTTAGAACTAAAAAGTCCATATATTTCCTTTGTTGAGTGAGTTCGAGAGGTGTGCGATCATTTAATTTCTTCCCTTTAACATCCTACCTTTATTTGATTTCTACTTTGCAGTTAAAACAATTCAAATTAATCAAAACTAACAATCGTATCAAGTAAAACTTGTCCATTATCCATGTAGTTAGGTGTTTTTTCATAAACGTTTTCACTTTGATTTCATTCAAAATAAACTAAAACATAAAAATATTTAATTTTCTCCCAAAATCCTACCAAAGTAACCAAGAAAAATAAAGGTAATTCCTTTTCAAATAAGTGATCAAGAAACATGTTGTTGGAAGAAGAGAGGATGAAATACTAATATGCATGGAAGATCGTCTAAATTCAAAATTGATCTCATCTATGATAGTTCGTTTAATAATAATTTAGAGGTTTATTTAATATATATATTATCTTTTTGTAGTCACACGTCGTCAAAGATGTCAACGAATTCAATAGAAGACTCCGTAGATGAAAATTTAACTCTAACAACAGAACCCATTTTAGAAAAGAAAGAGGAGAATAATATTGTGATTATTATTTATGAAGAAGAAGAGTACACAAATTCAGAAGAATCTAAAGAAACTGCAACCCAGAAATATGATGAAAGCTCAGAAGTTCCACAAAGTTTTCCATCTACAGCATTATTTGATGAAGATGACAAAAATAGACCATCATCAACATCATCTTCCTCGTCTTTGTATTCATCCTCATCATCCTCATCGTCAGAAGAAACTTCATCTAGTGGAGTTGATCTTTCACAAGAGATTGATGGAGATGACAATAATATTGATATCATTATATATATTGATGATGATGAGAATCACGAAGACAAACATGCTCGTATATAT

mRNA sequence

ATGCCGCCCGATCACAAAACTAAATCAAGCTTTCACCTCGAGAGACTAGACAAACCAGCCAACAAGAAGAACGTCGAATTGGGTACCGTCGAAAACACTGGTGTTTTGCGGTTGGTCATGTGGGGTGAAGCCTTCGTTTTTGGATGTCTACTCATAGCTTCTACATTTAAGAAGAGCAAGAAGAGCATATCCCCTAAAACATGTCGAGAGGGTGTCTCAAATCTTGATGTTATTGGTGGTTTCAAAGAAAGTAGTACCCGAGATGATGACGATAAAGCTCGAAAAATGGAAGGATTACGACTTCTTTTGTCTTCATCAACTGATATCATCAGTCATCCATGTCACACGTCGTCAAAGATGTCAACGAATTCAATAGAAGACTCCGTAGATGAAAATTTAACTCTAACAACAGAACCCATTTTAGAAAAGAAAGAGGAGAATAATATTGTGATTATTATTTATGAAGAAGAAGAGTACACAAATTCAGAAGAATCTAAAGAAACTGCAACCCAGAAATATGATGAAAGCTCAGAAGTTCCACAAAGTTTTCCATCTACAGCATTATTTGATGAAGATGACAAAAATAGACCATCATCAACATCATCTTCCTCGTCTTTGTATTCATCCTCATCATCCTCATCGTCAGAAGAAACTTCATCTAGTGGAGTTGATCTTTCACAAGAGATTGATGGAGATGACAATAATATTGATATCATTATATATATTGATGATGATGAGAATCACGAAGACAAACATGCTCGTATATAT

Coding sequence (CDS)

ATGCCGCCCGATCACAAAACTAAATCAAGCTTTCACCTCGAGAGACTAGACAAACCAGCCAACAAGAAGAACGTCGAATTGGGTACCGTCGAAAACACTGGTGTTTTGCGGTTGGTCATGTGGGGTGAAGCCTTCGTTTTTGGATGTCTACTCATAGCTTCTACATTTAAGAAGAGCAAGAAGAGCATATCCCCTAAAACATGTCGAGAGGGTGTCTCAAATCTTGATGTTATTGGTGGTTTCAAAGAAAGTAGTACCCGAGATGATGACGATAAAGCTCGAAAAATGGAAGGATTACGACTTCTTTTGTCTTCATCAACTGATATCATCAGTCATCCATGTCACACGTCGTCAAAGATGTCAACGAATTCAATAGAAGACTCCGTAGATGAAAATTTAACTCTAACAACAGAACCCATTTTAGAAAAGAAAGAGGAGAATAATATTGTGATTATTATTTATGAAGAAGAAGAGTACACAAATTCAGAAGAATCTAAAGAAACTGCAACCCAGAAATATGATGAAAGCTCAGAAGTTCCACAAAGTTTTCCATCTACAGCATTATTTGATGAAGATGACAAAAATAGACCATCATCAACATCATCTTCCTCGTCTTTGTATTCATCCTCATCATCCTCATCGTCAGAAGAAACTTCATCTAGTGGAGTTGATCTTTCACAAGAGATTGATGGAGATGACAATAATATTGATATCATTATATATATTGATGATGATGAGAATCACGAAGACAAACATGCTCGTATATAT

Homology

[Close]

BLAST of CSPI07G17640 vs. TrEMBL
Match: A0A0A0K656_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398200 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 1.8e-103
Identity = 207/213 (97.18%), Postives = 209/213 (98.12%), Query Frame = 1


Query: 1   MPPDHKTKSSFHLERLDKPANKKNVELGTVENTGVLRLVMWGEAFVFGCLLIASTFKKSK 60
           MPPDHKTKSSFHLER DKPANKKNVELGTVENTGVLRLVMWG AFVFGCLLIASTFKKSK
Sbjct: 1   MPPDHKTKSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSK 60

Query: 61  KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLLLSSSTDIISHPCHTSSKM 120
           KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRL+LSSSTDIISHPCHTSSKM
Sbjct: 61  KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLILSSSTDIISHPCHTSSKM 120

Query: 121 STNSIEDSVDENLTLTTEPILEKKEENNIVIIIYEEEEYTNSEESKETATQKYDESSEVP 180
           STNSIEDSVDENLTLTTEPILEKKEE+NIVIIIYEEEEYTNSEESKETATQKYDESSEVP
Sbjct: 121 STNSIEDSVDENLTLTTEPILEKKEEDNIVIIIYEEEEYTNSEESKETATQKYDESSEVP 180

Query: 181 QSFPSTALFDEDDKNRPSSTSSSSSLYSSSSSS 214
           QSFPSTALFDEDDKNRPSSTSSSSSLYSSS  S
Sbjct: 181 QSFPSTALFDEDDKNRPSSTSSSSSLYSSSKFS 213

[Close]

BLAST of CSPI07G17640 vs. NCBI nr
Match: gi|778730411|ref|XP_011659778.1| (PREDICTED: putative uncharacterized protein DDB_G0281733 [Cucumis sativus])

HSP 1 Score: 457.6 bits (1176), Expect = 1.4e-125
Identity = 252/258 (97.67%), Postives = 254/258 (98.45%), Query Frame = 1


Query: 1   MPPDHKTKSSFHLERLDKPANKKNVELGTVENTGVLRLVMWGEAFVFGCLLIASTFKKSK 60
           MPPDHKTKSSFHLER DKPANKKNVELGTVENTGVLRLVMWG AFVFGCLLIASTFKKSK
Sbjct: 1   MPPDHKTKSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSK 60

Query: 61  KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLLLSSSTDIISHPCHTSSKM 120
           KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRL+LSSSTDIISHPCHTSSKM
Sbjct: 61  KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLILSSSTDIISHPCHTSSKM 120

Query: 121 STNSIEDSVDENLTLTTEPILEKKEENNIVIIIYEEEEYTNSEESKETATQKYDESSEVP 180
           STNSIEDSVDENLTLTTEPILEKKEE+NIVIIIYEEEEYTNSEESKETATQKYDESSEVP
Sbjct: 121 STNSIEDSVDENLTLTTEPILEKKEEDNIVIIIYEEEEYTNSEESKETATQKYDESSEVP 180

Query: 181 QSFPSTALFDEDDKNRPSSTSSSSSLY--SSSSSSSSEETSSSGVDLSQEIDGDDNNIDI 240
           QSFPSTALFDEDDKNRPSSTSSSSSLY  SSSSSSSSEETSSSGVDLSQEIDGDDNNIDI
Sbjct: 181 QSFPSTALFDEDDKNRPSSTSSSSSLYSSSSSSSSSSEETSSSGVDLSQEIDGDDNNIDI 240

Query: 241 IIYIDDDENHEDKHARIY 257
           IIYIDDDENHEDKHARIY
Sbjct: 241 IIYIDDDENHEDKHARIY 258

[Close]

BLAST of CSPI07G17640 vs. NCBI nr
Match: gi|700189725|gb|KGN44958.1| (hypothetical protein Csa_7G398200 [Cucumis sativus])

HSP 1 Score: 383.6 bits (984), Expect = 2.6e-103
Identity = 207/213 (97.18%), Postives = 209/213 (98.12%), Query Frame = 1


Query: 1   MPPDHKTKSSFHLERLDKPANKKNVELGTVENTGVLRLVMWGEAFVFGCLLIASTFKKSK 60
           MPPDHKTKSSFHLER DKPANKKNVELGTVENTGVLRLVMWG AFVFGCLLIASTFKKSK
Sbjct: 1   MPPDHKTKSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSK 60

Query: 61  KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLLLSSSTDIISHPCHTSSKM 120
           KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRL+LSSSTDIISHPCHTSSKM
Sbjct: 61  KSISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLILSSSTDIISHPCHTSSKM 120

Query: 121 STNSIEDSVDENLTLTTEPILEKKEENNIVIIIYEEEEYTNSEESKETATQKYDESSEVP 180
           STNSIEDSVDENLTLTTEPILEKKEE+NIVIIIYEEEEYTNSEESKETATQKYDESSEVP
Sbjct: 121 STNSIEDSVDENLTLTTEPILEKKEEDNIVIIIYEEEEYTNSEESKETATQKYDESSEVP 180

Query: 181 QSFPSTALFDEDDKNRPSSTSSSSSLYSSSSSS 214
           QSFPSTALFDEDDKNRPSSTSSSSSLYSSS  S
Sbjct: 181 QSFPSTALFDEDDKNRPSSTSSSSSLYSSSKFS 213

[Close]

BLAST of CSPI07G17640 vs. NCBI nr
Match: gi|659101325|ref|XP_008451548.1| (PREDICTED: protein gar2-like [Cucumis melo])

HSP 1 Score: 311.6 bits (797), Expect = 1.3e-81
Identity = 200/262 (76.34%), Postives = 215/262 (82.06%), Query Frame = 1


Query: 1   MPPDHKTKSSFHLERLDKPANKKNVELGTVENTGVLRLVMWGEAFVFGCLLIASTFKKSK 60
           MPPDH+ KSSFHLER +KP NKKNVELGTVEN GVLRLVMWG AFVFGCLLIASTFKKSK
Sbjct: 5   MPPDHE-KSSFHLERPNKPTNKKNVELGTVENNGVLRLVMWGGAFVFGCLLIASTFKKSK 64

Query: 61  K-SISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLLLSSSTDIISHPCHTSSK 120
           K + SPK  REG S+LDVI           DDKA++MEGLRL+LSSSTDIISH CHTSSK
Sbjct: 65  KITTSPKRSREGDSDLDVIA----------DDKAQEMEGLRLVLSSSTDIISHLCHTSSK 124

Query: 121 MSTNSIEDSVDENLTLTTEPILEKK-EENNIVIIIYEEEEYTNSE-ESKETATQKYDESS 180
           M TNSIEDS  ENL +TTE ILEKK +E NIV+IIYEEEEYTNSE +S E ATQKYDESS
Sbjct: 125 MLTNSIEDSEYENLPITTESILEKKDQEENIVVIIYEEEEYTNSELDSIENATQKYDESS 184

Query: 181 EVPQSFPSTALFDEDDKNRPSSTSSSSSLYSSSSSSS--SEETSSSGVDLSQEIDGDDNN 240
            V QSFPSTALFDE DK RPSSTSSSSS YSSSS SS  SEETSS+GV LSQEI+ DD N
Sbjct: 185 NVAQSFPSTALFDEYDKKRPSSTSSSSSSYSSSSLSSTLSEETSSTGV-LSQEIEEDDKN 244

Query: 241 IDIIIYID-DDENHEDKHARIY 257
           IDIIIYID DDEN+E +H  IY
Sbjct: 245 IDIIIYIDHDDENYEGEHDHIY 254

The following BLAST results are available for this feature:

BLAST of CSPI07G17640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G17640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K656_CUCSA	1.8e-103	97.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398200 PE=4 SV=1	[more]

BLAST of CSPI07G17640 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G17640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730411\|ref\|XP_011659778.1\|	1.4e-125	97.67	PREDICTED: putative uncharacterized protein DDB_G0281733 [Cucumis sativus]	[more]
gi\|700189725\|gb\|KGN44958.1\|	2.6e-103	97.18	hypothetical protein Csa_7G398200 [Cucumis sativus]	[more]
gi\|659101325\|ref\|XP_008451548.1\|	1.3e-81	76.34	PREDICTED: protein gar2-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G17640.1	CSPI07G17640.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G17640	Cla015082	Watermelon (97103) v1	cpiwmB578
CSPI07G17640	Csa7G398200	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G17640	MELO3C015982	Melon (DHL92) v3.5.1	cpimeB540
CSPI07G17640	ClCG09G005730	Watermelon (Charleston Gray)	cpiwcgB547
CSPI07G17640	Lsi02G024180	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G17640	MELO3C015982.2	Melon (DHL92) v3.6.1	cpimedB525
CSPI07G17640	CsaV3_7G029450	Cucumber (Chinese Long) v3	cpicucB414
CSPI07G17640	Bhi09G000736	Wax gourd	cpiwgoB703
CSPI07G17640	CmaCh17G010730	Cucurbita maxima (Rimu)	cmacpiB392
CSPI07G17640	CmoCh17G010450	Cucurbita moschata (Rifu)	cmocpiB381
CSPI07G17640	CsGy7G016080	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G17640	Carg07161	Silver-seed gourd	carcpiB0124

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G17640	Cucumber (Chinese Long) v3	cpicucB402
CSPI07G17640	Watermelon (97103) v2	cpiwmbB541
CSPI07G17640	Watermelon (97103) v2	cpiwmbB564
CSPI07G17640	Watermelon (97103) v2	cpiwmbB590
CSPI07G17640	Watermelon (97103) v2	cpiwmbB598
CSPI07G17640	Wax gourd	cpiwgoB658
CSPI07G17640	Wax gourd	cpiwgoB666
CSPI07G17640	Cucurbita maxima (Rimu)	cmacpiB934
CSPI07G17640	Wild cucumber (PI 183967)	cpicpiB167
CSPI07G17640	Cucumber (Gy14) v1	cgycpiB106
CSPI07G17640	Cucumber (Gy14) v1	cgycpiB325
CSPI07G17640	Cucurbita moschata (Rifu)	cmocpiB913
CSPI07G17640	Cucumber (Chinese Long) v2	cpicuB345
CSPI07G17640	Melon (DHL92) v3.5.1	cpimeB572
CSPI07G17640	Watermelon (Charleston Gray)	cpiwcgB555
CSPI07G17640	Watermelon (Charleston Gray)	cpiwcgB560
CSPI07G17640	Watermelon (97103) v1	cpiwmB587
CSPI07G17640	Watermelon (97103) v1	cpiwmB593
CSPI07G17640	Cucurbita pepo (Zucchini)	cpecpiB163
CSPI07G17640	Cucurbita pepo (Zucchini)	cpecpiB344
CSPI07G17640	Bottle gourd (USVL1VR-Ls)	cpilsiB530
CSPI07G17640	Melon (DHL92) v3.6.1	cpimedB557
CSPI07G17640	Silver-seed gourd	carcpiB0599
CSPI07G17640	Silver-seed gourd	carcpiB0855