MELO3C015982 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015982
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Peptidyl-tRNA hydrolase
Location	chr1 : 30972440 .. 30974129 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACCAAACTACCTCCCACACTGATTTCCTCCTTCCCTTGATGATCATTTCAATGCCGCCCGACCACGAAAAATCAAGCTTTCACCTCGAGAGACCGAACAAACCAACCAACAAGAAGAACGTCGAATTGGGTACTGTCGAAAATAATGGTGTTTTGCGGTTGGTCATGTGGGGTGGAGCCTTCGTTTTTGGATGTCTACTCATAGCTTCTACATTTAAGAAGAGCAAGAAGATCACCACATCCCCTAAAAGGAGTCGAGAGGGTGATTCAGATCTTGACGTTATTGCGGACGATAAAGCTCAAGAAATGGAAGGATTGCGACTTGTTCTGTCTTCATCAACTGATATCATCAGTCATCTATGGTTAGAACTAAAAACTCCACATTTCCTTTGTTGAGTGAGATGTGTGATCATTTCTTCCCTTTAACATCCCTACCTATATTTGATTTCTACTTTGCAGTTAAAAACAATTAAAACTAATCAAAATTAACAATTGTTTGAACTTTAACTCGTCCATTATCCATGTAATTATGTGTTTTTTCATAAATGTTTTCACTTGATTTCATTCAAAATAAACTACACAAAAACATTTAATTTTCTCCCAAAATCCTACCAAAGTAAAAAAAAAATTGTAATAATTATTTTTCAAATAAGTGAAGAAACATGTTGGGAAGAAGAGAGGATGAAAAACTATGTAAGTTTATCTTTAATATTTTGAGCACCAAAAGACAATAGATCATGTGTTAAAATCTCTAAAATGTTATTTGATTTCATTCTCAATTAATTATATTAATTTTTAATTATTGTATATTTTTTTACATATTTGAATTAGTTTACCAAGTAAAGTGAAAAGTGAATAAGATGATGTAAATATTAATTTAATCTAATCCATAAGCTTAAGTTTTTGAATCAATGATGATTTAAAACGACTTAATTATAAGCTTAATATTCATTTGATTATAGTATTAATTCCATCTTGAGATGAGAATAATAATACATGTATAACTGCTGGTGAATACTAATATGAAGATCATCTAAATTCTAAATTGGTTTCATCTATAATAGTTTAATAATTGAGAGGTTTATTTAGTGTATATATTATCTTTTTGTAGCCACACGTCGTCAAAAATGTTAACGAATTCAATAGAAGACTCCGAATATGAAAATCTACCTATAACAACGGAATCCATCTTAGAAAAGAAAGATCAAGAGGAAAATATTGTGGTTATTATTTATGAAGAAGAAGAGTACACAAATTCAGAATTAGATTCCATAGAAAATGCAACCCAGAAATATGATGAAAGCTCAAACGTTGCACAAAGTTTTCCATCTACAGCATTATTTGATGAATATGACAAGAAAAGGCCATCATCGACATCATCTTCCTCGTCTTCGTATTCATCTTCATCATTGTCATCTACATTGTCAGAAGAAACTTCATCTACTGGAGTTCTTTCACAAGAGATCGAAGAAGATGACAAAAATATTGATATCATTATATATATTGATCATGATGATGAGAATTACGAAGGCGAACATGATCATATATATATAGTGTGATATGTCGGAGAATCTTGATCTAATTTGTGTTTATATTTGGTAAGGAAAATACTATTTAGTTTTCATCTTGTTTATATTGGTTTGTTTTAGTTCATTATGATTTCGTTTATAATCAGATAATCGATATATA

mRNA sequence

ACACCAAACTACCTCCCACACTGATTTCCTCCTTCCCTTGATGATCATTTCAATGCCGCCCGACCACGAAAAATCAAGCTTTCACCTCGAGAGACCGAACAAACCAACCAACAAGAAGAACGTCGAATTGGGTACTGTCGAAAATAATGGTGTTTTGCGGTTGGTCATGTGGGGTGGAGCCTTCGTTTTTGGATGTCTACTCATAGCTTCTACATTTAAGAAGAGCAAGAAGATCACCACATCCCCTAAAAGGAGTCGAGAGGGTGATTCAGATCTTGACGTTATTGCGGACGATAAAGCTCAAGAAATGGAAGGATTGCGACTTGTTCTGTCTTCATCAACTGATATCATCAGTCATCTATGCCACACGTCGTCAAAAATGTTAACGAATTCAATAGAAGACTCCGAATATGAAAATCTACCTATAACAACGGAATCCATCTTAGAAAAGAAAGATCAAGAGGAAAATATTGTGGTTATTATTTATGAAGAAGAAGAGTACACAAATTCAGAATTAGATTCCATAGAAAATGCAACCCAGAAATATGATGAAAGCTCAAACGTTGCACAAAGTTTTCCATCTACAGCATTATTTGATGAATATGACAAGAAAAGGCCATCATCGACATCATCTTCCTCGTCTTCGTATTCATCTTCATCATTGTCATCTACATTGTCAGAAGAAACTTCATCTACTGGAGTTCTTTCACAAGAGATCGAAGAAGATGACAAAAATATTGATATCATTATATATATTGATCATGATGATGAGAATTACGAAGGCGAACATGATCATATATATATAGTGTGATATGTCGGAGAATCTTGATCTAATTTGTGTTTATATTTGGTAAGGAAAATACTATTTAGTTTTCATCTTGTTTATATTGGTTTGTTTTAGTTCATTATGATTTCGTTTATAATCAGATAATCGATATATA

Coding sequence (CDS)

ATGATCATTTCAATGCCGCCCGACCACGAAAAATCAAGCTTTCACCTCGAGAGACCGAACAAACCAACCAACAAGAAGAACGTCGAATTGGGTACTGTCGAAAATAATGGTGTTTTGCGGTTGGTCATGTGGGGTGGAGCCTTCGTTTTTGGATGTCTACTCATAGCTTCTACATTTAAGAAGAGCAAGAAGATCACCACATCCCCTAAAAGGAGTCGAGAGGGTGATTCAGATCTTGACGTTATTGCGGACGATAAAGCTCAAGAAATGGAAGGATTGCGACTTGTTCTGTCTTCATCAACTGATATCATCAGTCATCTATGCCACACGTCGTCAAAAATGTTAACGAATTCAATAGAAGACTCCGAATATGAAAATCTACCTATAACAACGGAATCCATCTTAGAAAAGAAAGATCAAGAGGAAAATATTGTGGTTATTATTTATGAAGAAGAAGAGTACACAAATTCAGAATTAGATTCCATAGAAAATGCAACCCAGAAATATGATGAAAGCTCAAACGTTGCACAAAGTTTTCCATCTACAGCATTATTTGATGAATATGACAAGAAAAGGCCATCATCGACATCATCTTCCTCGTCTTCGTATTCATCTTCATCATTGTCATCTACATTGTCAGAAGAAACTTCATCTACTGGAGTTCTTTCACAAGAGATCGAAGAAGATGACAAAAATATTGATATCATTATATATATTGATCATGATGATGAGAATTACGAAGGCGAACATGATCATATATATATAGTGTGA

Protein sequence

MIISMPPDHEKSSFHLERPNKPTNKKNVELGTVENNGVLRLVMWGGAFVFGCLLIASTFKKSKKITTSPKRSREGDSDLDVIADDKAQEMEGLRLVLSSSTDIISHLCHTSSKMLTNSIEDSEYENLPITTESILEKKDQEENIVVIIYEEEEYTNSELDSIENATQKYDESSNVAQSFPSTALFDEYDKKRPSSTSSSSSSYSSSSLSSTLSEETSSTGVLSQEIEEDDKNIDIIIYIDHDDENYEGEHDHIYIV*

Homology

[Close]

BLAST of MELO3C015982 vs. TrEMBL
Match: A0A0A0K656_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398200 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 3.1e-79
Identity = 168/216 (77.78%), Postives = 180/216 (83.33%), Query Frame = 1


Query: 5   MPPDHE-KSSFHLERPNKPTNKKNVELGTVENNGVLRLVMWGGAFVFGCLLIASTFKKSK 64
           MPPDH+ KSSFHLERP+KP NKKNVELGTVEN GVLRLVMWGGAFVFGCLLIASTFKKSK
Sbjct: 1   MPPDHKTKSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSK 60

Query: 65  KITTSPKRSREGDSDLDVIA----------DDKAQEMEGLRLVLSSSTDIISHLCHTSSK 124
           K + SPK  REG S+LDVI           DDKA++MEGLRL+LSSSTDIISH CHTSSK
Sbjct: 61  K-SISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLILSSSTDIISHPCHTSSK 120

Query: 125 MLTNSIEDSEYENLPITTESILEKKDQEENIVVIIYEEEEYTNSELDSIENATQKYDESS 184
           M TNSIEDS  ENL +TTE ILEKK +E+NIV+IIYEEEEYTNSE +S E ATQKYDESS
Sbjct: 121 MSTNSIEDSVDENLTLTTEPILEKK-EEDNIVIIIYEEEEYTNSE-ESKETATQKYDESS 180

Query: 185 NVAQSFPSTALFDEYDKKRPSSTSSSSSSYSSSSLS 210
            V QSFPSTALFDE DK RPSSTSSSSS YSSS  S
Sbjct: 181 EVPQSFPSTALFDEDDKNRPSSTSSSSSLYSSSKFS 213

[Close]

BLAST of MELO3C015982 vs. NCBI nr
Match: gi|659101325|ref|XP_008451548.1| (PREDICTED: protein gar2-like [Cucumis melo])

HSP 1 Score: 503.8 bits (1296), Expect = 1.7e-139
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 1


Query: 1   MIISMPPDHEKSSFHLERPNKPTNKKNVELGTVENNGVLRLVMWGGAFVFGCLLIASTFK 60
           MIISMPPDHEKSSFHLERPNKPTNKKNVELGTVENNGVLRLVMWGGAFVFGCLLIASTFK
Sbjct: 1   MIISMPPDHEKSSFHLERPNKPTNKKNVELGTVENNGVLRLVMWGGAFVFGCLLIASTFK 60

Query: 61  KSKKITTSPKRSREGDSDLDVIADDKAQEMEGLRLVLSSSTDIISHLCHTSSKMLTNSIE 120
           KSKKITTSPKRSREGDSDLDVIADDKAQEMEGLRLVLSSSTDIISHLCHTSSKMLTNSIE
Sbjct: 61  KSKKITTSPKRSREGDSDLDVIADDKAQEMEGLRLVLSSSTDIISHLCHTSSKMLTNSIE 120

Query: 121 DSEYENLPITTESILEKKDQEENIVVIIYEEEEYTNSELDSIENATQKYDESSNVAQSFP 180
           DSEYENLPITTESILEKKDQEENIVVIIYEEEEYTNSELDSIENATQKYDESSNVAQSFP
Sbjct: 121 DSEYENLPITTESILEKKDQEENIVVIIYEEEEYTNSELDSIENATQKYDESSNVAQSFP 180

Query: 181 STALFDEYDKKRPSSTSSSSSSYSSSSLSSTLSEETSSTGVLSQEIEEDDKNIDIIIYID 240
           STALFDEYDKKRPSSTSSSSSSYSSSSLSSTLSEETSSTGVLSQEIEEDDKNIDIIIYID
Sbjct: 181 STALFDEYDKKRPSSTSSSSSSYSSSSLSSTLSEETSSTGVLSQEIEEDDKNIDIIIYID 240

Query: 241 HDDENYEGEHDHIYIV 257
           HDDENYEGEHDHIYIV
Sbjct: 241 HDDENYEGEHDHIYIV 256

[Close]

BLAST of MELO3C015982 vs. NCBI nr
Match: gi|778730411|ref|XP_011659778.1| (PREDICTED: putative uncharacterized protein DDB_G0281733 [Cucumis sativus])

HSP 1 Score: 360.1 bits (923), Expect = 3.1e-96
Identity = 202/263 (76.81%), Postives = 220/263 (83.65%), Query Frame = 1


Query: 5   MPPDHE-KSSFHLERPNKPTNKKNVELGTVENNGVLRLVMWGGAFVFGCLLIASTFKKSK 64
           MPPDH+ KSSFHLERP+KP NKKNVELGTVEN GVLRLVMWGGAFVFGCLLIASTFKKSK
Sbjct: 1   MPPDHKTKSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSK 60

Query: 65  KITTSPKRSREGDSDLDVIA----------DDKAQEMEGLRLVLSSSTDIISHLCHTSSK 124
           K + SPK  REG S+LDVI           DDKA++MEGLRL+LSSSTDIISH CHTSSK
Sbjct: 61  K-SISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLILSSSTDIISHPCHTSSK 120

Query: 125 MLTNSIEDSEYENLPITTESILEKKDQEENIVVIIYEEEEYTNSELDSIENATQKYDESS 184
           M TNSIEDS  ENL +TTE ILEKK+ E+NIV+IIYEEEEYTNSE +S E ATQKYDESS
Sbjct: 121 MSTNSIEDSVDENLTLTTEPILEKKE-EDNIVIIIYEEEEYTNSE-ESKETATQKYDESS 180

Query: 185 NVAQSFPSTALFDEYDKKRPSSTSSSSSSYSSSSLSSTLSEETSSTGV-LSQEIEEDDKN 244
            V QSFPSTALFDE DK RPSSTSSSSS YSSSS SS+ SEETSS+GV LSQEI+ DD N
Sbjct: 181 EVPQSFPSTALFDEDDKNRPSSTSSSSSLYSSSSSSSSSSEETSSSGVDLSQEIDGDDNN 240

Query: 245 IDIIIYIDHDDENYEGEHDHIYI 256
           IDIIIYID DDEN+E +H  IY+
Sbjct: 241 IDIIIYID-DDENHEDKHARIYV 259

[Close]

BLAST of MELO3C015982 vs. NCBI nr
Match: gi|700189725|gb|KGN44958.1| (hypothetical protein Csa_7G398200 [Cucumis sativus])

HSP 1 Score: 303.1 bits (775), Expect = 4.5e-79
Identity = 168/216 (77.78%), Postives = 180/216 (83.33%), Query Frame = 1


Query: 5   MPPDHE-KSSFHLERPNKPTNKKNVELGTVENNGVLRLVMWGGAFVFGCLLIASTFKKSK 64
           MPPDH+ KSSFHLERP+KP NKKNVELGTVEN GVLRLVMWGGAFVFGCLLIASTFKKSK
Sbjct: 1   MPPDHKTKSSFHLERPDKPANKKNVELGTVENTGVLRLVMWGGAFVFGCLLIASTFKKSK 60

Query: 65  KITTSPKRSREGDSDLDVIA----------DDKAQEMEGLRLVLSSSTDIISHLCHTSSK 124
           K + SPK  REG S+LDVI           DDKA++MEGLRL+LSSSTDIISH CHTSSK
Sbjct: 61  K-SISPKTCREGVSNLDVIGGFKESSTRDDDDKARKMEGLRLILSSSTDIISHPCHTSSK 120

Query: 125 MLTNSIEDSEYENLPITTESILEKKDQEENIVVIIYEEEEYTNSELDSIENATQKYDESS 184
           M TNSIEDS  ENL +TTE ILEKK +E+NIV+IIYEEEEYTNSE +S E ATQKYDESS
Sbjct: 121 MSTNSIEDSVDENLTLTTEPILEKK-EEDNIVIIIYEEEEYTNSE-ESKETATQKYDESS 180

Query: 185 NVAQSFPSTALFDEYDKKRPSSTSSSSSSYSSSSLS 210
            V QSFPSTALFDE DK RPSSTSSSSS YSSS  S
Sbjct: 181 EVPQSFPSTALFDEDDKNRPSSTSSSSSLYSSSKFS 213

The following BLAST results are available for this feature:

BLAST of MELO3C015982 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K656_CUCSA	3.1e-79	77.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398200 PE=4 SV=1	[more]

BLAST of MELO3C015982 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101325\|ref\|XP_008451548.1\|	1.7e-139	100.00	PREDICTED: protein gar2-like [Cucumis melo]	[more]
gi\|778730411\|ref\|XP_011659778.1\|	3.1e-96	76.81	PREDICTED: putative uncharacterized protein DDB_G0281733 [Cucumis sativus]	[more]
gi\|700189725\|gb\|KGN44958.1\|	4.5e-79	77.78	hypothetical protein Csa_7G398200 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU64056	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015982T1	MELO3C015982T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU64056	MU64056	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015982	Csa7G398200	Cucumber (Chinese Long) v2	cumeB532
MELO3C015982	Cla015082	Watermelon (97103) v1	mewmB209
MELO3C015982	ClCG09G005730	Watermelon (Charleston Gray)	mewcgB183
MELO3C015982	Bhi09G000736	Wax gourd	mewgoB254
MELO3C015982	CSPI07G17640	Wild cucumber (PI 183967)	cpimeB540
MELO3C015982	Lsi02G024180	Bottle gourd (USVL1VR-Ls)	lsimeB192
MELO3C015982	CsGy7G016080	Cucumber (Gy14) v2	cgybmeB470
MELO3C015982	Carg07161	Silver-seed gourd	carmeB0110
MELO3C015982	CsaV3_7G029450	Cucumber (Chinese Long) v3	cucmeB550

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015982	Cucumber (Gy14) v1	cgymeB371
MELO3C015982	Cucurbita maxima (Rimu)	cmameB320
MELO3C015982	Cucurbita maxima (Rimu)	cmameB831
MELO3C015982	Cucurbita moschata (Rifu)	cmomeB313
MELO3C015982	Cucurbita moschata (Rifu)	cmomeB815
MELO3C015982	Watermelon (Charleston Gray)	mewcgB162
MELO3C015982	Watermelon (97103) v1	mewmB184
MELO3C015982	Cucurbita pepo (Zucchini)	cpemeB118
MELO3C015982	Cucurbita pepo (Zucchini)	cpemeB293
MELO3C015982	Silver-seed gourd	carmeB0566
MELO3C015982	Watermelon (97103) v2	mewmbB209
MELO3C015982	Watermelon (97103) v2	mewmbB232