Csa6G448180 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G448180
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionHistone H2B; contains IPR000558 (Histone H2B), IPR009072 (Histone-fold)
LocationChr6 : 21141417 .. 21142146 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTTTCTAAAACCAAACCCCTCTTACCCATCTCATATCCGAAGACTTGTTCAACTGAAATGGCTCCAAGGGCAGAGAAGAAGCCCGCCGAGAAGAAACCAGCGGAGAAGGCTCCAGCCGGCGAGAAGAAGCCTCGAGCGGAGAAAAAGATTTCGAAAGATGCTTCGTCGTCAGATAAGAAGAAGAAGAGGACGAAGAAGAGCGTTGAGACCTACAAGATTTACATCTTCAAGGTCTTGAAGCAGGTTCATCCCGATATCGGAATCTCTAGCAAGGCCATGGGGATTATGAACAGTTTTATTAACGACATTTTTGAGAAGCTTGCTCAGGAATCGTCGCGATTGGCTAGGTATAACAAGAAGCCGACTATCACCTCTAGGGAAATCCAAACGGCTGTTCGGCTTGTGCTTCCTGGTGAACTTGCCAAGCATGCTGTATCGGAAGGGACGAAAGCAGTTACTAAATTCACCAGTTCTTAGAAATTTCGATCGTATCTGTTAGTGTTTAGAAATTAGTTTTGATAGTGTGTGATGACATAGATTGCGATAGCTTTTGTCTGGCTTAGTATGAAACTGAAATTCTTTGTTTAAATTTGATGCTTTCTTTTCGTATAATTGTAGATCAGTAATCAGAAAGTGTTTAGAATTCGTCGTTTGTTCCTACTTTTTCTTTATTCTAATTGAATAGAACACTTGGGAAGAGAATTCTTGATCGAAATTTTACACTTGGC

mRNA sequence

ATGGCTCCAAGGGCAGAGAAGAAGCCCGCCGAGAAGAAACCAGCGGAGAAGGCTCCAGCCGGCGAGAAGAAGCCTCGAGCGGAGAAAAAGATTTCGAAAGATGCTTCGTCGTCAGATAAGAAGAAGAAGAGGACGAAGAAGAGCGTTGAGACCTACAAGATTTACATCTTCAAGGTCTTGAAGCAGGTTCATCCCGATATCGGAATCTCTAGCAAGGCCATGGGGATTATGAACAGTTTTATTAACGACATTTTTGAGAAGCTTGCTCAGGAATCGTCGCGATTGGCTAGGTATAACAAGAAGCCGACTATCACCTCTAGGGAAATCCAAACGGCTGTTCGGCTTGTGCTTCCTGGTGAACTTGCCAAGCATGCTGTATCGGAAGGGACGAAAGCAGTTACTAAATTCACCAGTTCTTAG

Coding sequence (CDS)

ATGGCTCCAAGGGCAGAGAAGAAGCCCGCCGAGAAGAAACCAGCGGAGAAGGCTCCAGCCGGCGAGAAGAAGCCTCGAGCGGAGAAAAAGATTTCGAAAGATGCTTCGTCGTCAGATAAGAAGAAGAAGAGGACGAAGAAGAGCGTTGAGACCTACAAGATTTACATCTTCAAGGTCTTGAAGCAGGTTCATCCCGATATCGGAATCTCTAGCAAGGCCATGGGGATTATGAACAGTTTTATTAACGACATTTTTGAGAAGCTTGCTCAGGAATCGTCGCGATTGGCTAGGTATAACAAGAAGCCGACTATCACCTCTAGGGAAATCCAAACGGCTGTTCGGCTTGTGCTTCCTGGTGAACTTGCCAAGCATGCTGTATCGGAAGGGACGAAAGCAGTTACTAAATTCACCAGTTCTTAG

Protein sequence

MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS*
Homology
[Close]
BLAST of Csa6G448180 vs. Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 244.2 bits (622), Expect = 8.5e-64
Identity = 129/136 (94.85%), Postives = 131/136 (96.32%), Query Frame = 1 

Query: 4   RAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVLKQV 63
           +AEKKPAEKKPAEKAPA EKKP+AEKKISK+ SS DKKKKRTKKSVETYKIYIFKVLKQV
Sbjct: 5   KAEKKPAEKKPAEKAPA-EKKPKAEKKISKEGSS-DKKKKRTKKSVETYKIYIFKVLKQV 64

Query: 64  HPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAK 123
           HPDIG+SSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAK
Sbjct: 65  HPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAK 124

Query: 124 HAVSEGTKAVTKFTSS 140
           HAVSEGTKAVTKFTSS
Sbjct: 125 HAVSEGTKAVTKFTSS 138

[Close]
BLAST of Csa6G448180 vs. Swiss-Prot
Match: H2B4_ARATH (Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 238.0 bits (606), Expect = 6.1e-62
Identity = 125/139 (89.93%), Postives = 130/139 (93.53%), Query Frame = 1 

Query: 1   MAPRA-EKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKV 60
           MAP+A EKKPAEKKPA KAPA EK P+AEKKISKDA  S+KKKK++KKSVETYKIYIFKV
Sbjct: 1   MAPKAAEKKPAEKKPAGKAPA-EKLPKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPD+GIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTS 139
           ELAKHAVSEGTKAVTKFTS
Sbjct: 121 ELAKHAVSEGTKAVTKFTS 138

[Close]
BLAST of Csa6G448180 vs. Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 234.2 bits (596), Expect = 8.8e-61
Identity = 127/148 (85.81%), Postives = 132/148 (89.19%), Query Frame = 1 

Query: 1   MAPRAEKKPAEKKPAE-------KAPAGEKKPRAEKKISKD--ASSSDKKKKRTKKSVET 60
           MAP+AEKKPAEKKPAE       KAPA EKKP+A KK+ K+  A++ DKKKKR KKSVET
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPA-EKKPKAGKKLPKEGGAAAGDKKKKRVKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]
BLAST of Csa6G448180 vs. Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.0e-60
Identity = 123/136 (90.44%), Postives = 128/136 (94.12%), Query Frame = 1 

Query: 5   AEKKPAEKKP-AEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVLKQV 64
           AEKKPAEK P AEKAPA EKKP+A KK+ KDA++ DKKKKR+KK+VETYKIYIFKVLKQV
Sbjct: 3   AEKKPAEKTPVAEKAPA-EKKPKAGKKLPKDAAAGDKKKKRSKKAVETYKIYIFKVLKQV 62

Query: 65  HPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAK 124
           HPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAK
Sbjct: 63  HPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAK 122

Query: 125 HAVSEGTKAVTKFTSS 140
           HAVSEGTKAVTKFTSS
Sbjct: 123 HAVSEGTKAVTKFTSS 137

[Close]
BLAST of Csa6G448180 vs. Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 231.9 bits (590), Expect = 4.4e-60
Identity = 126/149 (84.56%), Postives = 131/149 (87.92%), Query Frame = 1 

Query: 1   MAPRAEKKPAEKKPAE--------KAPAGEKKPRAEKKISKDASSS--DKKKKRTKKSVE 60
           MAP+ EKKPAEKKPAE        KAPA EKKP+A KK+ K+  S+  +KKKKR+KKSVE
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPA-EKKPKAGKKLPKEGGSAAGEKKKKRSKKSVE 60

Query: 61  TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 120
           TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ
Sbjct: 61  TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 120

Query: 121 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           TAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]
BLAST of Csa6G448180 vs. TrEMBL
Match: A0A0A0KHB8_CUCSA (Histone H2B OS=Cucumis sativus GN=Csa_6G448180 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.7e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1 

Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL 60
           MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL
Sbjct: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]
BLAST of Csa6G448180 vs. TrEMBL
Match: I3T995_LOTJA (Histone H2B OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-63
Identity = 133/141 (94.33%), Postives = 137/141 (97.16%), Query Frame = 1 

Query: 1   MAPRAEKKPAEKKPA--EKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFK 60
           MAP+AEKKPAEKKPA  EKAPA EKKP+AEKKISKDA+ S+KKKKRTKKSVETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAAAEKAPA-EKKPKAEKKISKDATGSEKKKKRTKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 140
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 140

[Close]
BLAST of Csa6G448180 vs. TrEMBL
Match: A5BXF9_VITVI (Histone H2B OS=Vitis vinifera GN=VITISV_016378 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.5e-63
Identity = 132/146 (90.41%), Postives = 137/146 (93.84%), Query Frame = 1 

Query: 1   MAPRAEKKPAEKKPA-------EKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYK 60
           MAP+AEKKPAEKKPA       EKAPA EKKPRAEKK+ KDASS+DKKKKRTKK+VETYK
Sbjct: 1   MAPKAEKKPAEKKPAGGEEKKAEKAPA-EKKPRAEKKLPKDASSTDKKKKRTKKNVETYK 60

Query: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 120
           IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAV
Sbjct: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAV 120

Query: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 140
           RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]
BLAST of Csa6G448180 vs. TrEMBL
Match: A0A067L9C8_JATCU (Histone H2B OS=Jatropha curcas GN=JCGZ_01566 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-62
Identity = 128/139 (92.09%), Postives = 133/139 (95.68%), Query Frame = 1 

Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL 60
           MAP+AEKKPAEKKPAEKAPA EKKPRAEKK+ K+  + DKKKK+ KKSVETYKIYIFKVL
Sbjct: 1   MAPKAEKKPAEKKPAEKAPA-EKKPRAEKKLPKEGGAIDKKKKKAKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 138

[Close]
BLAST of Csa6G448180 vs. TrEMBL
Match: F6HNA5_VITVI (Histone H2B OS=Vitis vinifera GN=VIT_13s0019g05370 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.5e-62
Identity = 131/146 (89.73%), Postives = 137/146 (93.84%), Query Frame = 1 

Query: 1   MAPRAEKKPAEKKPA-------EKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYK 60
           MAP+AEKKPAEKKPA       EKAPA EKKPRAEKK+ KDASS+DKKKKRT+K+VETYK
Sbjct: 1   MAPKAEKKPAEKKPAGGEEKKAEKAPA-EKKPRAEKKLPKDASSTDKKKKRTRKNVETYK 60

Query: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 120
           IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAV
Sbjct: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAV 120

Query: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 140
           RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]
BLAST of Csa6G448180 vs. TAIR10
Match: AT2G37470.1 (AT2G37470.1 Histone superfamily protein)

HSP 1 Score: 238.0 bits (606), Expect = 3.4e-63
Identity = 125/139 (89.93%), Postives = 130/139 (93.53%), Query Frame = 1 

Query: 1   MAPRA-EKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKV 60
           MAP+A EKKPAEKKPA KAPA EK P+AEKKISKDA  S+KKKK++KKSVETYKIYIFKV
Sbjct: 1   MAPKAAEKKPAEKKPAGKAPA-EKLPKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPD+GIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTS 139
           ELAKHAVSEGTKAVTKFTS
Sbjct: 121 ELAKHAVSEGTKAVTKFTS 138

[Close]
BLAST of Csa6G448180 vs. TAIR10
Match: AT3G46030.1 (AT3G46030.1 Histone superfamily protein)

HSP 1 Score: 229.9 bits (585), Expect = 9.3e-61
Identity = 125/146 (85.62%), Postives = 129/146 (88.36%), Query Frame = 1 

Query: 1   MAPRAEKKPAEKKP------AEKAPAGEKKPRAEKKISKDASSS-DKKKKRTKKSVETYK 60
           MAP+AEKKPAEKKP      AEKAPA EKKP+A KK+ K+A +  DKKKK  KKSVETYK
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPA-EKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYK 60

Query: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 120
           IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAV
Sbjct: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAV 120

Query: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 140
           RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]
BLAST of Csa6G448180 vs. TAIR10
Match: AT2G28720.1 (AT2G28720.1 Histone superfamily protein)

HSP 1 Score: 229.6 bits (584), Expect = 1.2e-60
Identity = 123/151 (81.46%), Postives = 129/151 (85.43%), Query Frame = 1 

Query: 1   MAPRAEKKPAEKKPAEKAPA----------GEKKPRAEKKISKDASSS--DKKKKRTKKS 60
           MAP+A KKPAEKKPAEKAPA           EKKP+A KK+ K+A +   +KKKKR KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]
BLAST of Csa6G448180 vs. TAIR10
Match: AT3G53650.1 (AT3G53650.1 Histone superfamily protein)

HSP 1 Score: 229.6 bits (584), Expect = 1.2e-60
Identity = 122/140 (87.14%), Postives = 130/140 (92.86%), Query Frame = 1 

Query: 1   MAPRA-EKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKV 60
           MAP+A EKKPA KKPAEKAPA EK P+AEKKI+K+  S +KKKK++KK++ETYKIYIFKV
Sbjct: 1   MAPKAAEKKPAGKKPAEKAPA-EKLPKAEKKITKEGGS-EKKKKKSKKNIETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 140
           EL+KHAVSEGTKAVTKFTSS
Sbjct: 121 ELSKHAVSEGTKAVTKFTSS 138

[Close]
BLAST of Csa6G448180 vs. TAIR10
Match: AT3G45980.1 (AT3G45980.1 Histone superfamily protein)

HSP 1 Score: 229.2 bits (583), Expect = 1.6e-60
Identity = 126/151 (83.44%), Postives = 129/151 (85.43%), Query Frame = 1 

Query: 1   MAPRAEKKPAEKKPA-----------EKAPAGEKKPRAEKKISKDASSS-DKKKKRTKKS 60
           MAPRAEKKPAEKKPA           EKAPA EKKP+A KK+ K+A +  DKKKK  KKS
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPA-EKKPKAGKKLPKEAGAGGDKKKKMKKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 120
           VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]
BLAST of Csa6G448180 vs. NCBI nr
Match: gi|449451070|ref|XP_004143285.1| (PREDICTED: probable histone H2B.3 [Cucumis sativus])

HSP 1 Score: 269.2 bits (687), Expect = 3.9e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1 

Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL 60
           MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL
Sbjct: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]
BLAST of Csa6G448180 vs. NCBI nr
Match: gi|659125100|ref|XP_008462509.1| (PREDICTED: probable histone H2B.3 [Cucumis melo])

HSP 1 Score: 263.8 bits (673), Expect = 1.7e-67
Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 1 

Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL 60
           MAP+AEKKPAEKKPAEKAPAGEKKPRAEKKI KDASSSDKKKKR KKSVETYKIYIFKVL
Sbjct: 1   MAPKAEKKPAEKKPAEKAPAGEKKPRAEKKIPKDASSSDKKKKRMKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]
BLAST of Csa6G448180 vs. NCBI nr
Match: gi|388522051|gb|AFK49087.1| (unknown [Lotus japonicus])

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-63
Identity = 133/141 (94.33%), Postives = 137/141 (97.16%), Query Frame = 1 

Query: 1   MAPRAEKKPAEKKPA--EKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFK 60
           MAP+AEKKPAEKKPA  EKAPA EKKP+AEKKISKDA+ S+KKKKRTKKSVETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAAAEKAPA-EKKPKAEKKISKDATGSEKKKKRTKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 140
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 140

[Close]
BLAST of Csa6G448180 vs. NCBI nr
Match: gi|720036249|ref|XP_010267292.1| (PREDICTED: histone H2B.3-like [Nelumbo nucifera])

HSP 1 Score: 248.4 bits (633), Expect = 7.2e-63
Identity = 130/148 (87.84%), Postives = 135/148 (91.22%), Query Frame = 1 

Query: 1   MAPRAEKKPAEKKPA---------EKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVET 60
           MAP+AEKKPAEKKPA         EK P  EKKP+AEKK+ KDASSSDKKKKR+KKSVET
Sbjct: 1   MAPKAEKKPAEKKPASSAAEEKKAEKTPVAEKKPKAEKKLPKDASSSDKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]
BLAST of Csa6G448180 vs. NCBI nr
Match: gi|147832884|emb|CAN72813.1| (hypothetical protein VITISV_016378 [Vitis vinifera])

HSP 1 Score: 248.1 bits (632), Expect = 9.4e-63
Identity = 132/146 (90.41%), Postives = 137/146 (93.84%), Query Frame = 1 

Query: 1   MAPRAEKKPAEKKPA-------EKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYK 60
           MAP+AEKKPAEKKPA       EKAPA EKKPRAEKK+ KDASS+DKKKKRTKK+VETYK
Sbjct: 1   MAPKAEKKPAEKKPAGGEEKKAEKAPA-EKKPRAEKKLPKDASSTDKKKKRTKKNVETYK 60

Query: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 120
           IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAV
Sbjct: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAV 120

Query: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 140
           RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 145

The following BLAST results are available for this feature:
BLAST of Csa6G448180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
H2B3_MEDTR8.5e-6494.85Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3[more]
H2B4_ARATH6.1e-6289.93Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470 PE=1 SV=3[more]
H2B_GOSHI8.8e-6185.81Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3[more]
H2B3_SOLLC2.0e-6090.44Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1[more]
H2B1_MEDTR4.4e-6084.56Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3[more]
BLAST of Csa6G448180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHB8_CUCSA2.7e-69100.00Histone H2B OS=Cucumis sativus GN=Csa_6G448180 PE=3 SV=1[more]
I3T995_LOTJA1.0e-6394.33Histone H2B OS=Lotus japonicus PE=2 SV=1[more]
A5BXF9_VITVI6.5e-6390.41Histone H2B OS=Vitis vinifera GN=VITISV_016378 PE=3 SV=1[more]
A0A067L9C8_JATCU1.1e-6292.09Histone H2B OS=Jatropha curcas GN=JCGZ_01566 PE=3 SV=1[more]
F6HNA5_VITVI1.5e-6289.73Histone H2B OS=Vitis vinifera GN=VIT_13s0019g05370 PE=3 SV=1[more]
BLAST of Csa6G448180 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37470.13.4e-6389.93 Histone superfamily protein[more]
AT3G46030.19.3e-6185.62 Histone superfamily protein[more]
AT2G28720.11.2e-6081.46 Histone superfamily protein[more]
AT3G53650.11.2e-6087.14 Histone superfamily protein[more]
AT3G45980.11.6e-6083.44 Histone superfamily protein[more]
BLAST of Csa6G448180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449451070|ref|XP_004143285.1|3.9e-69100.00PREDICTED: probable histone H2B.3 [Cucumis sativus][more]
gi|659125100|ref|XP_008462509.1|1.7e-6797.84PREDICTED: probable histone H2B.3 [Cucumis melo][more]
gi|388522051|gb|AFK49087.1|1.4e-6394.33unknown [Lotus japonicus][more]
gi|720036249|ref|XP_010267292.1|7.2e-6387.84PREDICTED: histone H2B.3-like [Nelumbo nucifera][more]
gi|147832884|emb|CAN72813.1|9.4e-6390.41hypothetical protein VITISV_016378 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000558Histone_H2B
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU098002cucumber EST collection version 3.0transcribed_cluster
CU159011cucumber EST collection version 3.0transcribed_cluster
CU169718cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G448180.1Csa6G448180.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU159011CU159011transcribed_cluster
CU169718CU169718transcribed_cluster
CU098002CU098002transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000558Histone H2BPRINTSPR00621HISTONEH2Bcoord: 123..136
score: 2.8E-49coord: 93..110
score: 2.8E-49coord: 71..91
score: 2.8E-49coord: 110..123
score: 2.8E-49coord: 52..70
score: 2.8
IPR000558Histone H2BPANTHERPTHR23428HISTONE H2Bcoord: 8..139
score: 4.0E
IPR000558Histone H2BSMARTSM00427h2b3coord: 42..138
score: 4.6
IPR000558Histone H2BPROSITEPS00357HISTONE_H2Bcoord: 107..129
scor
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 5..115
score: 6.5
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 21..139
score: 3.0
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 25..139
score: 1.61

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G448180Cla018341Watermelon (97103) v1cuwmB505
Csa6G448180MELO3C024490Melon (DHL92) v3.5.1cumeB508
Csa6G448180ClCG04G009530Watermelon (Charleston Gray)cuwcgB464
Csa6G448180Lsi01G012850Bottle gourd (USVL1VR-Ls)culsiB435
Csa6G448180MELO3C024490.2Melon (DHL92) v3.6.1cumedB487
Csa6G448180Cla97C04G076300Watermelon (97103) v2cuwmbB455
Csa6G448180Bhi03G001177Wax gourdcuwgoB629
Csa6G448180CSPI06G24940Wild cucumber (PI 183967)cpicuB313
Csa6G448180Cucsa.124890Cucumber (Gy14) v1cgycuB167
Csa6G448180CsGy6G024360Cucumber (Gy14) v2cgybcuB281
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G448180Melon (DHL92) v3.5.1cumeB484
Csa6G448180Watermelon (Charleston Gray)cuwcgB424
Csa6G448180Watermelon (Charleston Gray)cuwcgB444
Csa6G448180Watermelon (97103) v1cuwmB452
Csa6G448180Watermelon (97103) v1cuwmB518
Csa6G448180Cucurbita pepo (Zucchini)cpecuB085
Csa6G448180Cucurbita pepo (Zucchini)cpecuB296
Csa6G448180Cucurbita pepo (Zucchini)cpecuB503
Csa6G448180Cucurbita pepo (Zucchini)cpecuB624
Csa6G448180Cucurbita pepo (Zucchini)cpecuB876
Csa6G448180Bottle gourd (USVL1VR-Ls)culsiB445
Csa6G448180Cucumber (Gy14) v2cgybcuB137
Csa6G448180Cucumber (Gy14) v2cgybcuB284
Csa6G448180Melon (DHL92) v3.6.1cumedB411
Csa6G448180Melon (DHL92) v3.6.1cumedB464
Csa6G448180Silver-seed gourdcarcuB0181
Csa6G448180Silver-seed gourdcarcuB0267
Csa6G448180Silver-seed gourdcarcuB0278
Csa6G448180Silver-seed gourdcarcuB0678
Csa6G448180Watermelon (97103) v2cuwmbB418
Csa6G448180Watermelon (97103) v2cuwmbB434
Csa6G448180Wax gourdcuwgoB529
Csa6G448180Wax gourdcuwgoB614
Csa6G448180Cucumber (Chinese Long) v2cucuB109
Csa6G448180Cucumber (Chinese Long) v2cucuB168
Csa6G448180Cucumber (Gy14) v1cgycuB439
Csa6G448180Cucumber (Gy14) v1cgycuB542
Csa6G448180Cucurbita maxima (Rimu)cmacuB267
Csa6G448180Cucurbita maxima (Rimu)cmacuB561
Csa6G448180Cucurbita maxima (Rimu)cmacuB681
Csa6G448180Cucurbita maxima (Rimu)cmacuB840
Csa6G448180Cucurbita maxima (Rimu)cmacuB878
Csa6G448180Cucurbita moschata (Rifu)cmocuB253
Csa6G448180Cucurbita moschata (Rifu)cmocuB670
Csa6G448180Cucurbita moschata (Rifu)cmocuB828
Csa6G448180Cucurbita moschata (Rifu)cmocuB865