Csa6G448180.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G448180.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Histone H2B; contains IPR000558 (Histone H2B), IPR009072 (Histone-fold)
Location	Chr6 : 21141417 .. 21142146 (+)
Sequence length	420

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTTTCTAAAACCAAACCCCTCTTACCCATCTCATATCCGAAGACTTGTTCAACTGAAATGGCTCCAAGGGCAGAGAAGAAGCCCGCCGAGAAGAAACCAGCGGAGAAGGCTCCAGCCGGCGAGAAGAAGCCTCGAGCGGAGAAAAAGATTTCGAAAGATGCTTCGTCGTCAGATAAGAAGAAGAAGAGGACGAAGAAGAGCGTTGAGACCTACAAGATTTACATCTTCAAGGTCTTGAAGCAGGTTCATCCCGATATCGGAATCTCTAGCAAGGCCATGGGGATTATGAACAGTTTTATTAACGACATTTTTGAGAAGCTTGCTCAGGAATCGTCGCGATTGGCTAGGTATAACAAGAAGCCGACTATCACCTCTAGGGAAATCCAAACGGCTGTTCGGCTTGTGCTTCCTGGTGAACTTGCCAAGCATGCTGTATCGGAAGGGACGAAAGCAGTTACTAAATTCACCAGTTCTTAGAAATTTCGATCGTATCTGTTAGTGTTTAGAAATTAGTTTTGATAGTGTGTGATGACATAGATTGCGATAGCTTTTGTCTGGCTTAGTATGAAACTGAAATTCTTTGTTTAAATTTGATGCTTTCTTTTCGTATAATTGTAGATCAGTAATCAGAAAGTGTTTAGAATTCGTCGTTTGTTCCTACTTTTTCTTTATTCTAATTGAATAGAACACTTGGGAAGAGAATTCTTGATCGAAATTTTACACTTGGC

mRNA sequence

ATGGCTCCAAGGGCAGAGAAGAAGCCCGCCGAGAAGAAACCAGCGGAGAAGGCTCCAGCCGGCGAGAAGAAGCCTCGAGCGGAGAAAAAGATTTCGAAAGATGCTTCGTCGTCAGATAAGAAGAAGAAGAGGACGAAGAAGAGCGTTGAGACCTACAAGATTTACATCTTCAAGGTCTTGAAGCAGGTTCATCCCGATATCGGAATCTCTAGCAAGGCCATGGGGATTATGAACAGTTTTATTAACGACATTTTTGAGAAGCTTGCTCAGGAATCGTCGCGATTGGCTAGGTATAACAAGAAGCCGACTATCACCTCTAGGGAAATCCAAACGGCTGTTCGGCTTGTGCTTCCTGGTGAACTTGCCAAGCATGCTGTATCGGAAGGGACGAAAGCAGTTACTAAATTCACCAGTTCTTAG

Coding sequence (CDS)

ATGGCTCCAAGGGCAGAGAAGAAGCCCGCCGAGAAGAAACCAGCGGAGAAGGCTCCAGCCGGCGAGAAGAAGCCTCGAGCGGAGAAAAAGATTTCGAAAGATGCTTCGTCGTCAGATAAGAAGAAGAAGAGGACGAAGAAGAGCGTTGAGACCTACAAGATTTACATCTTCAAGGTCTTGAAGCAGGTTCATCCCGATATCGGAATCTCTAGCAAGGCCATGGGGATTATGAACAGTTTTATTAACGACATTTTTGAGAAGCTTGCTCAGGAATCGTCGCGATTGGCTAGGTATAACAAGAAGCCGACTATCACCTCTAGGGAAATCCAAACGGCTGTTCGGCTTGTGCTTCCTGGTGAACTTGCCAAGCATGCTGTATCGGAAGGGACGAAAGCAGTTACTAAATTCACCAGTTCTTAG

Protein sequence

MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS*

Homology

[Close]

BLAST of Csa6G448180.1 vs. Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 244.2 bits (622), Expect = 8.5e-64
Identity = 129/136 (94.85%), Postives = 131/136 (96.32%), Query Frame = 1


Query: 4   RAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVLKQV 63
           +AEKKPAEKKPAEKAPA EKKP+AEKKISK+ SS DKKKKRTKKSVETYKIYIFKVLKQV
Sbjct: 5   KAEKKPAEKKPAEKAPA-EKKPKAEKKISKEGSS-DKKKKRTKKSVETYKIYIFKVLKQV 64

Query: 64  HPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAK 123
           HPDIG+SSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAK
Sbjct: 65  HPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAK 124

Query: 124 HAVSEGTKAVTKFTSS 140
           HAVSEGTKAVTKFTSS
Sbjct: 125 HAVSEGTKAVTKFTSS 138

[Close]

BLAST of Csa6G448180.1 vs. Swiss-Prot
Match: H2B4_ARATH (Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 238.0 bits (606), Expect = 6.1e-62
Identity = 125/139 (89.93%), Postives = 130/139 (93.53%), Query Frame = 1


Query: 1   MAPRA-EKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKV 60
           MAP+A EKKPAEKKPA KAPA EK P+AEKKISKDA  S+KKKK++KKSVETYKIYIFKV
Sbjct: 1   MAPKAAEKKPAEKKPAGKAPA-EKLPKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPD+GIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTS 139
           ELAKHAVSEGTKAVTKFTS
Sbjct: 121 ELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of Csa6G448180.1 vs. Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 234.2 bits (596), Expect = 8.8e-61
Identity = 127/148 (85.81%), Postives = 132/148 (89.19%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPAE-------KAPAGEKKPRAEKKISKD--ASSSDKKKKRTKKSVET 60
           MAP+AEKKPAEKKPAE       KAPA EKKP+A KK+ K+  A++ DKKKKR KKSVET
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPA-EKKPKAGKKLPKEGGAAAGDKKKKRVKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Csa6G448180.1 vs. Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.0e-60
Identity = 123/136 (90.44%), Postives = 128/136 (94.12%), Query Frame = 1


Query: 5   AEKKPAEKKP-AEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVLKQV 64
           AEKKPAEK P AEKAPA EKKP+A KK+ KDA++ DKKKKR+KK+VETYKIYIFKVLKQV
Sbjct: 3   AEKKPAEKTPVAEKAPA-EKKPKAGKKLPKDAAAGDKKKKRSKKAVETYKIYIFKVLKQV 62

Query: 65  HPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAK 124
           HPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAK
Sbjct: 63  HPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAK 122

Query: 125 HAVSEGTKAVTKFTSS 140
           HAVSEGTKAVTKFTSS
Sbjct: 123 HAVSEGTKAVTKFTSS 137

[Close]

BLAST of Csa6G448180.1 vs. Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 231.9 bits (590), Expect = 4.4e-60
Identity = 126/149 (84.56%), Postives = 131/149 (87.92%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPAE--------KAPAGEKKPRAEKKISKDASSS--DKKKKRTKKSVE 60
           MAP+ EKKPAEKKPAE        KAPA EKKP+A KK+ K+  S+  +KKKKR+KKSVE
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPA-EKKPKAGKKLPKEGGSAAGEKKKKRSKKSVE 60

Query: 61  TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 120
           TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ
Sbjct: 61  TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 120

Query: 121 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           TAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Csa6G448180.1 vs. TrEMBL
Match: A0A0A0KHB8_CUCSA (Histone H2B OS=Cucumis sativus GN=Csa_6G448180 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.7e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL 60
           MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL
Sbjct: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Csa6G448180.1 vs. TrEMBL
Match: I3T995_LOTJA (Histone H2B OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-63
Identity = 133/141 (94.33%), Postives = 137/141 (97.16%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPA--EKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFK 60
           MAP+AEKKPAEKKPA  EKAPA EKKP+AEKKISKDA+ S+KKKKRTKKSVETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAAAEKAPA-EKKPKAEKKISKDATGSEKKKKRTKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 140
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 140

[Close]

BLAST of Csa6G448180.1 vs. TrEMBL
Match: A5BXF9_VITVI (Histone H2B OS=Vitis vinifera GN=VITISV_016378 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.5e-63
Identity = 132/146 (90.41%), Postives = 137/146 (93.84%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPA-------EKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYK 60
           MAP+AEKKPAEKKPA       EKAPA EKKPRAEKK+ KDASS+DKKKKRTKK+VETYK
Sbjct: 1   MAPKAEKKPAEKKPAGGEEKKAEKAPA-EKKPRAEKKLPKDASSTDKKKKRTKKNVETYK 60

Query: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 120
           IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAV
Sbjct: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAV 120

Query: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 140
           RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Csa6G448180.1 vs. TrEMBL
Match: A0A067L9C8_JATCU (Histone H2B OS=Jatropha curcas GN=JCGZ_01566 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-62
Identity = 128/139 (92.09%), Postives = 133/139 (95.68%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL 60
           MAP+AEKKPAEKKPAEKAPA EKKPRAEKK+ K+  + DKKKK+ KKSVETYKIYIFKVL
Sbjct: 1   MAPKAEKKPAEKKPAEKAPA-EKKPRAEKKLPKEGGAIDKKKKKAKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Csa6G448180.1 vs. TrEMBL
Match: F6HNA5_VITVI (Histone H2B OS=Vitis vinifera GN=VIT_13s0019g05370 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.5e-62
Identity = 131/146 (89.73%), Postives = 137/146 (93.84%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPA-------EKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYK 60
           MAP+AEKKPAEKKPA       EKAPA EKKPRAEKK+ KDASS+DKKKKRT+K+VETYK
Sbjct: 1   MAPKAEKKPAEKKPAGGEEKKAEKAPA-EKKPRAEKKLPKDASSTDKKKKRTRKNVETYK 60

Query: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 120
           IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAV
Sbjct: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAV 120

Query: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 140
           RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Csa6G448180.1 vs. TAIR10
Match: AT2G37470.1 (AT2G37470.1 Histone superfamily protein)

HSP 1 Score: 238.0 bits (606), Expect = 3.4e-63
Identity = 125/139 (89.93%), Postives = 130/139 (93.53%), Query Frame = 1


Query: 1   MAPRA-EKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKV 60
           MAP+A EKKPAEKKPA KAPA EK P+AEKKISKDA  S+KKKK++KKSVETYKIYIFKV
Sbjct: 1   MAPKAAEKKPAEKKPAGKAPA-EKLPKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPD+GIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTS 139
           ELAKHAVSEGTKAVTKFTS
Sbjct: 121 ELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of Csa6G448180.1 vs. TAIR10
Match: AT3G46030.1 (AT3G46030.1 Histone superfamily protein)

HSP 1 Score: 229.9 bits (585), Expect = 9.3e-61
Identity = 125/146 (85.62%), Postives = 129/146 (88.36%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKP------AEKAPAGEKKPRAEKKISKDASSS-DKKKKRTKKSVETYK 60
           MAP+AEKKPAEKKP      AEKAPA EKKP+A KK+ K+A +  DKKKK  KKSVETYK
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPA-EKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYK 60

Query: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 120
           IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAV
Sbjct: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAV 120

Query: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 140
           RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Csa6G448180.1 vs. TAIR10
Match: AT2G28720.1 (AT2G28720.1 Histone superfamily protein)

HSP 1 Score: 229.6 bits (584), Expect = 1.2e-60
Identity = 123/151 (81.46%), Postives = 129/151 (85.43%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPAEKAPA----------GEKKPRAEKKISKDASSS--DKKKKRTKKS 60
           MAP+A KKPAEKKPAEKAPA           EKKP+A KK+ K+A +   +KKKKR KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Csa6G448180.1 vs. TAIR10
Match: AT3G53650.1 (AT3G53650.1 Histone superfamily protein)

HSP 1 Score: 229.6 bits (584), Expect = 1.2e-60
Identity = 122/140 (87.14%), Postives = 130/140 (92.86%), Query Frame = 1


Query: 1   MAPRA-EKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKV 60
           MAP+A EKKPA KKPAEKAPA EK P+AEKKI+K+  S +KKKK++KK++ETYKIYIFKV
Sbjct: 1   MAPKAAEKKPAGKKPAEKAPA-EKLPKAEKKITKEGGS-EKKKKKSKKNIETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 140
           EL+KHAVSEGTKAVTKFTSS
Sbjct: 121 ELSKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Csa6G448180.1 vs. TAIR10
Match: AT3G45980.1 (AT3G45980.1 Histone superfamily protein)

HSP 1 Score: 229.2 bits (583), Expect = 1.6e-60
Identity = 126/151 (83.44%), Postives = 129/151 (85.43%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPA-----------EKAPAGEKKPRAEKKISKDASSS-DKKKKRTKKS 60
           MAPRAEKKPAEKKPA           EKAPA EKKP+A KK+ K+A +  DKKKK  KKS
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPA-EKKPKAGKKLPKEAGAGGDKKKKMKKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 120
           VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Csa6G448180.1 vs. NCBI nr
Match: gi|449451070|ref|XP_004143285.1| (PREDICTED: probable histone H2B.3 [Cucumis sativus])

HSP 1 Score: 269.2 bits (687), Expect = 3.9e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL 60
           MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL
Sbjct: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Csa6G448180.1 vs. NCBI nr
Match: gi|659125100|ref|XP_008462509.1| (PREDICTED: probable histone H2B.3 [Cucumis melo])

HSP 1 Score: 263.8 bits (673), Expect = 1.7e-67
Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL 60
           MAP+AEKKPAEKKPAEKAPAGEKKPRAEKKI KDASSSDKKKKR KKSVETYKIYIFKVL
Sbjct: 1   MAPKAEKKPAEKKPAEKAPAGEKKPRAEKKIPKDASSSDKKKKRMKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Csa6G448180.1 vs. NCBI nr
Match: gi|388522051|gb|AFK49087.1| (unknown [Lotus japonicus])

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-63
Identity = 133/141 (94.33%), Postives = 137/141 (97.16%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPA--EKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFK 60
           MAP+AEKKPAEKKPA  EKAPA EKKP+AEKKISKDA+ S+KKKKRTKKSVETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAAAEKAPA-EKKPKAEKKISKDATGSEKKKKRTKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 140
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 140

[Close]

BLAST of Csa6G448180.1 vs. NCBI nr
Match: gi|720036249|ref|XP_010267292.1| (PREDICTED: histone H2B.3-like [Nelumbo nucifera])

HSP 1 Score: 248.4 bits (633), Expect = 7.2e-63
Identity = 130/148 (87.84%), Postives = 135/148 (91.22%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPA---------EKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVET 60
           MAP+AEKKPAEKKPA         EK P  EKKP+AEKK+ KDASSSDKKKKR+KKSVET
Sbjct: 1   MAPKAEKKPAEKKPASSAAEEKKAEKTPVAEKKPKAEKKLPKDASSSDKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Csa6G448180.1 vs. NCBI nr
Match: gi|147832884|emb|CAN72813.1| (hypothetical protein VITISV_016378 [Vitis vinifera])

HSP 1 Score: 248.1 bits (632), Expect = 9.4e-63
Identity = 132/146 (90.41%), Postives = 137/146 (93.84%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPA-------EKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYK 60
           MAP+AEKKPAEKKPA       EKAPA EKKPRAEKK+ KDASS+DKKKKRTKK+VETYK
Sbjct: 1   MAPKAEKKPAEKKPAGGEEKKAEKAPA-EKKPRAEKKLPKDASSTDKKKKRTKKNVETYK 60

Query: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 120
           IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAV
Sbjct: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAV 120

Query: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 140
           RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 145

The following BLAST results are available for this feature:

BLAST of Csa6G448180.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2B3_MEDTR	8.5e-64	94.85	Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3	[more]
H2B4_ARATH	6.1e-62	89.93	Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470 PE=1 SV=3	[more]
H2B_GOSHI	8.8e-61	85.81	Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3	[more]
H2B3_SOLLC	2.0e-60	90.44	Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1	[more]
H2B1_MEDTR	4.4e-60	84.56	Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3	[more]

BLAST of Csa6G448180.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHB8_CUCSA	2.7e-69	100.00	Histone H2B OS=Cucumis sativus GN=Csa_6G448180 PE=3 SV=1	[more]
I3T995_LOTJA	1.0e-63	94.33	Histone H2B OS=Lotus japonicus PE=2 SV=1	[more]
A5BXF9_VITVI	6.5e-63	90.41	Histone H2B OS=Vitis vinifera GN=VITISV_016378 PE=3 SV=1	[more]
A0A067L9C8_JATCU	1.1e-62	92.09	Histone H2B OS=Jatropha curcas GN=JCGZ_01566 PE=3 SV=1	[more]
F6HNA5_VITVI	1.5e-62	89.73	Histone H2B OS=Vitis vinifera GN=VIT_13s0019g05370 PE=3 SV=1	[more]

BLAST of Csa6G448180.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G37470.1	3.4e-63	89.93	Histone superfamily protein	[more]
AT3G46030.1	9.3e-61	85.62	Histone superfamily protein	[more]
AT2G28720.1	1.2e-60	81.46	Histone superfamily protein	[more]
AT3G53650.1	1.2e-60	87.14	Histone superfamily protein	[more]
AT3G45980.1	1.6e-60	83.44	Histone superfamily protein	[more]

BLAST of Csa6G448180.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451070\|ref\|XP_004143285.1\|	3.9e-69	100.00	PREDICTED: probable histone H2B.3 [Cucumis sativus]	[more]
gi\|659125100\|ref\|XP_008462509.1\|	1.7e-67	97.84	PREDICTED: probable histone H2B.3 [Cucumis melo]	[more]
gi\|388522051\|gb\|AFK49087.1\|	1.4e-63	94.33	unknown [Lotus japonicus]	[more]
gi\|720036249\|ref\|XP_010267292.1\|	7.2e-63	87.84	PREDICTED: histone H2B.3-like [Nelumbo nucifera]	[more]
gi\|147832884\|emb\|CAN72813.1\|	9.4e-63	90.41	hypothetical protein VITISV_016378 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000558	Histone_H2B
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G448180	Csa6G448180	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa6G448180.1	Csa6G448180.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G448180.1.utr5p1	Csa6G448180.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G448180.1.cds1	Csa6G448180.1.cds1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G448180.1.utr3p1	Csa6G448180.1.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 123..136 score: 2.8E-49coord: 93..110 score: 2.8E-49coord: 71..91 score: 2.8E-49coord: 110..123 score: 2.8E-49coord: 52..70 score: 2.8
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 8..139 score: 4.0E
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 42..138 score: 4.6
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 107..129 scor
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 5..115 score: 6.5
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 21..139 score: 3.0
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 25..139 score: 1.61