CU098002 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU098002
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Histone H2B
Location	Chr6 : 21141695 .. 21142129 (+)
Sequence length	452

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TAGTTGGTCCTATGGGGATTATGAACAGTTTTATTAACGACATTTTTTGAGAAGCTTGCTCAGGAATCGTCGCGATTGGCTAGGTATAACAAGAAGCCGACTATCACCTCTAGGGAAATCCAAACGGCTGTTCGGCTTGTGCTTCCTGGTGAACTTGCCAAGCATGCTGTATCGGAAGGGACGAAAGCAGTTACTAAATTCACCAGTTCTTAGAAATTTCGATCGTATCTGTTAGTGTTTAGAAATTAGTTTTGATAGTGTGTGATGACATAGATTGCGATAGCTTTTGTCTGGCTTAGTATGAAACTGAAATTCTTTGTTTTAAATTTGATGCTTTCTTTTCGTATAATTGTAGATCAGTAATCAGAAAGTGTTTAGAATTCGTCGTTTGTTCCTACTTTTTTCTTTTATTCTAATTGAATAGAACACTTGGGAAGAGAATTCTTGATACG

Library


Library category	ESTs
gynoecious flower library	10
hermaphrodite flower library	8

Homology

[Close]

BLAST of CU098002 vs. Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-22
Identity = 55/55 (100.00%), Postives = 53/55 (96.36%), Query Frame = 1


Query: 46  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 105
           FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 91  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145

Query: 106  165
           
Sbjct: 151  145

Query: 166  211
           
Sbjct: 211  145

[Close]

BLAST of CU098002 vs. Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-22
Identity = 55/55 (100.00%), Postives = 53/55 (96.36%), Query Frame = 1


Query: 46  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 105
           FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 94  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

Query: 106  165
           
Sbjct: 154  148

Query: 166  211
           
Sbjct: 214  148

[Close]

BLAST of CU098002 vs. Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-22
Identity = 55/55 (100.00%), Postives = 53/55 (96.36%), Query Frame = 1


Query: 46  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 105
           FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 84  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 138

Query: 106  165
           
Sbjct: 144  138

Query: 166  211
           
Sbjct: 204  138

[Close]

BLAST of CU098002 vs. Swiss-Prot
Match: H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-22
Identity = 55/55 (100.00%), Postives = 53/55 (96.36%), Query Frame = 1


Query: 46  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 105
           FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 78  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 132

Query: 106  165
           
Sbjct: 138  132

Query: 166  211
           
Sbjct: 198  132

[Close]

BLAST of CU098002 vs. Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.9e-22
Identity = 54/55 (98.18%), Postives = 53/55 (96.36%), Query Frame = 1


Query: 46  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 105
           FEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 83  FEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137

Query: 106  165
           
Sbjct: 143  137

Query: 166  211
           
Sbjct: 203  137

[Close]

BLAST of CU098002 vs. TrEMBL
Match: A0A151SAQ0_CAJCA (Histone H2B (Fragment) OS=Cajanus cajan GN=KK1_026330 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.9e-21
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1


Query: 43  FFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 102
           FFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 4   FFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 59

Query: 103  162
           
Sbjct: 64   59

Query: 163  211
           
Sbjct: 124  59

[Close]

BLAST of CU098002 vs. TrEMBL
Match: A0A0S3SLF1_PHAAN (Histone H2B OS=Vigna angularis var. angularis GN=Vigan.08G020000 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 46  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 105
           FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 81  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 135

Query: 106  165
           
Sbjct: 141  135

Query: 166  211
           
Sbjct: 201  135

[Close]

BLAST of CU098002 vs. TrEMBL
Match: I3S6P0_LOTJA (Histone H2B OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 46  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 105
           FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 88  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142

Query: 106  165
           
Sbjct: 148  142

Query: 166  211
           
Sbjct: 208  142

[Close]

BLAST of CU098002 vs. TrEMBL
Match: I3T995_LOTJA (Histone H2B OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 46  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 105
           FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 86  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140

Query: 106  165
           
Sbjct: 146  140

Query: 166  211
           
Sbjct: 206  140

[Close]

BLAST of CU098002 vs. TrEMBL
Match: I3SY24_LOTJA (Histone H2B OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 46  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 105
           FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 85  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 139

Query: 106  165
           
Sbjct: 145  139

Query: 166  211
           
Sbjct: 205  139

[Close]

BLAST of CU098002 vs. NCBI nr
Match: gi|1012340595|gb|KYP51809.1| (Histone H2B, partial [Cajanus cajan])

HSP 1 Score: 109.4 bits (272), Expect = 5.6e-21
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1


Query: 43  FFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 102
           FFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 4   FFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 59

Query: 103  162
           
Sbjct: 64   59

Query: 163  211
           
Sbjct: 124  59

[Close]

BLAST of CU098002 vs. NCBI nr
Match: gi|151564660|gb|ABS17661.1| (histone H2B, partial [Arnebia euchroma])

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 46  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 105
           FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 33  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 87

Query: 106  165
           
Sbjct: 93   87

Query: 166  211
           
Sbjct: 153  87

[Close]

BLAST of CU098002 vs. NCBI nr
Match: gi|922369492|ref|XP_013456910.1| (core histone H2A/H2B/H3/H4 [Medicago truncatula])

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 46  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 105
           FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 89  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143

Query: 106  165
           
Sbjct: 149  143

Query: 166  211
           
Sbjct: 209  143

[Close]

BLAST of CU098002 vs. NCBI nr
Match: gi|7387727|sp|O49118.3|H2B_CAPAN (RecName: Full=Histone H2B; AltName: Full=CaH2B)

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 46  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 105
           FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 91  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145

Query: 106  165
           
Sbjct: 151  145

Query: 166  211
           
Sbjct: 211  145

[Close]

BLAST of CU098002 vs. NCBI nr
Match: gi|565453926|ref|XP_006286660.1| (hypothetical protein CARUB_v10002579mg [Capsella rubella])

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 46  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 105
           FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 75  FEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 129

Query: 106  165
           
Sbjct: 135  129

Query: 166  211
           
Sbjct: 195  129

The following BLAST results are available for this feature:

BLAST of CU098002 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2B_CAPAN	1.7e-22	100.00	Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3	[more]
H2B1_MEDTR	1.7e-22	100.00	Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3	[more]
H2B3_MEDTR	1.7e-22	100.00	Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3	[more]
H2B9_ARATH	1.7e-22	100.00	Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3	[more]
H2B3_SOLLC	3.9e-22	98.18	Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1	[more]

BLAST of CU098002 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151SAQ0_CAJCA	3.9e-21	100.00	Histone H2B (Fragment) OS=Cajanus cajan GN=KK1_026330 PE=3 SV=1	[more]
A0A0S3SLF1_PHAAN	1.9e-20	100.00	Histone H2B OS=Vigna angularis var. angularis GN=Vigan.08G020000 PE=3 SV=1	[more]
I3S6P0_LOTJA	1.9e-20	100.00	Histone H2B OS=Lotus japonicus PE=2 SV=1	[more]
I3T995_LOTJA	1.9e-20	100.00	Histone H2B OS=Lotus japonicus PE=2 SV=1	[more]
I3SY24_LOTJA	1.9e-20	100.00	Histone H2B OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of CU098002 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012340595\|gb\|KYP51809.1\|	5.6e-21	100.00	Histone H2B, partial [Cajanus cajan]	[more]
gi\|151564660\|gb\|ABS17661.1\|	2.8e-20	100.00	histone H2B, partial [Arnebia euchroma]	[more]
gi\|922369492\|ref\|XP_013456910.1\|	2.8e-20	100.00	core histone H2A/H2B/H3/H4 [Medicago truncatula]	[more]
gi\|7387727\|sp\|O49118.3\|H2B_CAPAN	2.8e-20	100.00	RecName: Full=Histone H2B; AltName: Full=CaH2B	[more]
gi\|565453926\|ref\|XP_006286660.1\|	2.8e-20	100.00	hypothetical protein CARUB_v10002579mg [Capsella rubella]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000558	Histone_H2B
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G448180	Csa6G448180	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0041853	G0041853	EST
G0080715	G0080715	EST
G0093446	G0093446	EST
G0103162	G0103162	EST
G0135844	G0135844	EST
G0153835	G0153835	EST
G0165727	G0165727	EST
G0167813	G0167813	EST
G0181637	G0181637	EST
G0202976	G0202976	EST
H0063916	H0063916	EST
H0072283	H0072283	EST
H0075887	H0075887	EST
H0093411	H0093411	EST
H0095143	H0095143	EST
H0107468	H0107468	EST
H0120105	H0120105	EST
H0172453	H0172453	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 54..67 score: 3.5E-35coord: 41..54 score: 3.5E-35coord: 24..41 score: 3.5E-35coord: 2..22 score: 3.5
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 5..70 score: 5.2
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 1..69 score: 3.3
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 38..60 scor
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 5..46 score: 5.9
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 5..70 score: 1.1
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 5..70 score: 5.59