Lsi01G012850 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G012850
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Histone H2B
Location	chr01 : 11119852 .. 11120268 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCAAGGGCTGAGAAGAAGCCCGCCGAGAAGAAACCAGCGGAGAAGGCTCCCGCCGGCGAGAAGAAGCCTCGGGCGGAGAAAAAGCTTCCAAAAGATGCTTCGACGGAAAAGAAAAAGAAGAAGATGAAGAAGGGCGTTGAGACCTACAAGATTTACATCTTCAAGGTCTTGAAGCAAGTTCATCCCGATATCGGAATCTCGAGCAAGGCTATGGGGATTATGAACAGTTTTATTAACGATATTTTCGAGAAACTGGCTCAGGAATCATCGCGATTGGCTAGGTATAACAAGAAGCCGACGATCACATCGAGGGAAATCCAAACGGCTGTACGACTTGTGCTTCCTGGTGAACTTGCGAAGCATGCTGTATCTGAGGGGACAAAAGCGGTTACCAAATTCACCAGTTCTTAG

mRNA sequence

ATGGCTCCAAGGGCTGAGAAGAAGCCCGCCGAGAAGAAACCAGCGGAGAAGGCTCCCGCCGGCGAGAAGAAGCCTCGGGCGGAGAAAAAGCTTCCAAAAGATGCTTCGACGGAAAAGAAAAAGAAGAAGATGAAGAAGGGCGTTGAGACCTACAAGATTTACATCTTCAAGGTCTTGAAGCAAGTTCATCCCGATATCGGAATCTCGAGCAAGGCTATGGGGATTATGAACAGTTTTATTAACGATATTTTCGAGAAACTGGCTCAGGAATCATCGCGATTGGCTAGGTATAACAAGAAGCCGACGATCACATCGAGGGAAATCCAAACGGCTGTACGACTTGTGCTTCCTGGTGAACTTGCGAAGCATGCTGTATCTGAGGGGACAAAAGCGGTTACCAAATTCACCAGTTCTTAG

Coding sequence (CDS)

ATGGCTCCAAGGGCTGAGAAGAAGCCCGCCGAGAAGAAACCAGCGGAGAAGGCTCCCGCCGGCGAGAAGAAGCCTCGGGCGGAGAAAAAGCTTCCAAAAGATGCTTCGACGGAAAAGAAAAAGAAGAAGATGAAGAAGGGCGTTGAGACCTACAAGATTTACATCTTCAAGGTCTTGAAGCAAGTTCATCCCGATATCGGAATCTCGAGCAAGGCTATGGGGATTATGAACAGTTTTATTAACGATATTTTCGAGAAACTGGCTCAGGAATCATCGCGATTGGCTAGGTATAACAAGAAGCCGACGATCACATCGAGGGAAATCCAAACGGCTGTACGACTTGTGCTTCCTGGTGAACTTGCGAAGCATGCTGTATCTGAGGGGACAAAAGCGGTTACCAAATTCACCAGTTCTTAG

Protein sequence

MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

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BLAST of Lsi01G012850 vs. Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 219.2 bits (557), Expect = 2.9e-56
Identity = 122/135 (90.37%), Postives = 130/135 (96.30%), Query Frame = 1


Query: 4   RAEKKPAEKKPAEKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKVLKQVH 63
           +AEKKPAEKKPAEKAPA EKKP+AEKK+ K+ S++KKKK+ KK VETYKIYIFKVLKQVH
Sbjct: 5   KAEKKPAEKKPAEKAPA-EKKPKAEKKISKEGSSDKKKKRTKKSVETYKIYIFKVLKQVH 64

Query: 64  PDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKH 123
           PDIG+SSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKH
Sbjct: 65  PDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKH 124

Query: 124 AVSEGTKAVTKFTSS 139
           AVSEGTKAVTKFTSS
Sbjct: 125 AVSEGTKAVTKFTSS 138

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BLAST of Lsi01G012850 vs. Swiss-Prot
Match: H2B3_ARATH (Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 213.4 bits (542), Expect = 1.6e-54
Identity = 125/151 (82.78%), Postives = 132/151 (87.42%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPAEKAPA----------GEKKPRAEKKLPKDAST---EKKKKKMKKG 60
           MAP+A KKPAEKKPAEKAPA           EKKP+A KKLPK+A T   EKKKK++KK 
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 139
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Lsi01G012850 vs. Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 212.6 bits (540), Expect = 2.7e-54
Identity = 126/148 (85.14%), Postives = 134/148 (90.54%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPAE-------KAPAGEKKPRAEKKLPKD---ASTEKKKKKMKKGVET 60
           MAP+AEKKPAEKKPAE       KAPA EKKP+A KKLPK+   A+ +KKKK++KK VET
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPA-EKKPKAGKKLPKEGGAAAGDKKKKRVKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 139
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Lsi01G012850 vs. Swiss-Prot
Match: H2B8_ARATH (Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 212.6 bits (540), Expect = 2.7e-54
Identity = 122/139 (87.77%), Postives = 129/139 (92.81%), Query Frame = 1


Query: 1   MAPRA-EKKPAEKKPAEKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKVL 60
           MAP+A EKKPA KKPAEKAPA EK P+AEKK+ K+  +EKKKKK KK +ETYKIYIFKVL
Sbjct: 1   MAPKAAEKKPAGKKPAEKAPA-EKLPKAEKKITKEGGSEKKKKKSKKNIETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           L+KHAVSEGTKAVTKFTSS
Sbjct: 121 LSKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Lsi01G012850 vs. Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 212.2 bits (539), Expect = 3.5e-54
Identity = 127/149 (85.23%), Postives = 132/149 (88.59%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPAE--------KAPAGEKKPRAEKKLPKD---ASTEKKKKKMKKGVE 60
           MAP+ EKKPAEKKPAE        KAPA EKKP+A KKLPK+   A+ EKKKK+ KK VE
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPA-EKKPKAGKKLPKEGGSAAGEKKKKRSKKSVE 60

Query: 61  TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 120
           TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ
Sbjct: 61  TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 120

Query: 121 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 139
           TAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

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BLAST of Lsi01G012850 vs. TrEMBL
Match: A0A0A0KHB8_CUCSA (Histone H2B OS=Cucumis sativus GN=Csa_6G448180 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.8e-58
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKLPKDAST-EKKKKKMKKGVETYKIYIFKVL 60
           MAPRAEKKPAEKKPAEKAPAGEKKPRAEKK+ KDAS+ +KKKK+ KK VETYKIYIFKVL
Sbjct: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lsi01G012850 vs. TrEMBL
Match: F4YF90_CAMSI (Histone H2B OS=Camellia sinensis PE=2 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.6e-56
Identity = 129/139 (92.81%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKP-AEKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKVL 60
           MAP+A+KKPAEKKP AEKAPA EKKP+AEKKLPK+ASTEKKKK+ KK VETYKIYIFKVL
Sbjct: 1   MAPKADKKPAEKKPAAEKAPA-EKKPKAEKKLPKEASTEKKKKRSKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Lsi01G012850 vs. TrEMBL
Match: A9PC90_POPTR (Histone H2B OS=Populus trichocarpa GN=POPTR_0010s23770g PE=2 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 5.8e-56
Identity = 130/140 (92.86%), Postives = 133/140 (95.00%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPA--EKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKV 60
           MAP+AEKKPAEKKPA  EKAPA EKKPRAEKKLPK+  +EKKKKK KK VETYKIYIFKV
Sbjct: 1   MAPKAEKKPAEKKPAAAEKAPA-EKKPRAEKKLPKEGVSEKKKKKAKKSVETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 139
           ELAKHAVSEGTKAVTKFTSS
Sbjct: 121 ELAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lsi01G012850 vs. TrEMBL
Match: A9P8Q5_POPTR (Histone H2B OS=Populus trichocarpa GN=POPTR_0008s02990g PE=2 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 5.8e-56
Identity = 129/140 (92.14%), Postives = 134/140 (95.71%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPA--EKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKV 60
           MAP+AEKKPAEKKPA  EKAPA EKKPRAEKKLPK+ ++EKKKK+ KK VETYKIYIFKV
Sbjct: 1   MAPKAEKKPAEKKPAAAEKAPA-EKKPRAEKKLPKEGASEKKKKRTKKNVETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 139
           ELAKHAVSEGTKAVTKFTSS
Sbjct: 121 ELAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lsi01G012850 vs. TrEMBL
Match: A0A067L9C8_JATCU (Histone H2B OS=Jatropha curcas GN=JCGZ_01566 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.6e-56
Identity = 129/139 (92.81%), Postives = 133/139 (95.68%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKLPKD-ASTEKKKKKMKKGVETYKIYIFKVL 60
           MAP+AEKKPAEKKPAEKAPA EKKPRAEKKLPK+  + +KKKKK KK VETYKIYIFKVL
Sbjct: 1   MAPKAEKKPAEKKPAEKAPA-EKKPRAEKKLPKEGGAIDKKKKKAKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Lsi01G012850 vs. TAIR10
Match: AT2G28720.1 (AT2G28720.1 Histone superfamily protein)

HSP 1 Score: 213.4 bits (542), Expect = 8.9e-56
Identity = 125/151 (82.78%), Postives = 132/151 (87.42%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPAEKAPA----------GEKKPRAEKKLPKDAST---EKKKKKMKKG 60
           MAP+A KKPAEKKPAEKAPA           EKKP+A KKLPK+A T   EKKKK++KK 
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 139
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Lsi01G012850 vs. TAIR10
Match: AT3G53650.1 (AT3G53650.1 Histone superfamily protein)

HSP 1 Score: 212.6 bits (540), Expect = 1.5e-55
Identity = 122/139 (87.77%), Postives = 129/139 (92.81%), Query Frame = 1


Query: 1   MAPRA-EKKPAEKKPAEKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKVL 60
           MAP+A EKKPA KKPAEKAPA EK P+AEKK+ K+  +EKKKKK KK +ETYKIYIFKVL
Sbjct: 1   MAPKAAEKKPAGKKPAEKAPA-EKLPKAEKKITKEGGSEKKKKKSKKNIETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           L+KHAVSEGTKAVTKFTSS
Sbjct: 121 LSKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Lsi01G012850 vs. TAIR10
Match: AT3G46030.1 (AT3G46030.1 Histone superfamily protein)

HSP 1 Score: 209.9 bits (533), Expect = 9.8e-55
Identity = 125/146 (85.62%), Postives = 130/146 (89.04%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKP------AEKAPAGEKKPRAEKKLPKDAST--EKKKKKMKKGVETYK 60
           MAP+AEKKPAEKKP      AEKAPA EKKP+A KKLPK+A    +KKKK  KK VETYK
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPA-EKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYK 60

Query: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 120
           IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAV
Sbjct: 61  IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAV 120

Query: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 139
           RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 RLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Lsi01G012850 vs. TAIR10
Match: AT2G37470.1 (AT2G37470.1 Histone superfamily protein)

HSP 1 Score: 209.9 bits (533), Expect = 9.8e-55
Identity = 123/139 (88.49%), Postives = 129/139 (92.81%), Query Frame = 1


Query: 1   MAPR-AEKKPAEKKPAEKAPAGEKKPRAEKKLPKDA-STEKKKKKMKKGVETYKIYIFKV 60
           MAP+ AEKKPAEKKPA KAPA EK P+AEKK+ KDA  +EKKKKK KK VETYKIYIFKV
Sbjct: 1   MAPKAAEKKPAEKKPAGKAPA-EKLPKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPD+GIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTS 138
           ELAKHAVSEGTKAVTKFTS
Sbjct: 121 ELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of Lsi01G012850 vs. TAIR10
Match: AT3G45980.1 (AT3G45980.1 Histone superfamily protein)

HSP 1 Score: 209.1 bits (531), Expect = 1.7e-54
Identity = 126/151 (83.44%), Postives = 130/151 (86.09%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPA-----------EKAPAGEKKPRAEKKLPKDAST--EKKKKKMKKG 60
           MAPRAEKKPAEKKPA           EKAPA EKKP+A KKLPK+A    +KKKK  KK 
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPA-EKKPKAGKKLPKEAGAGGDKKKKMKKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 120
           VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 139
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Lsi01G012850 vs. NCBI nr
Match: gi|659125100|ref|XP_008462509.1| (PREDICTED: probable histone H2B.3 [Cucumis melo])

HSP 1 Score: 236.9 bits (603), Expect = 2.1e-59
Identity = 132/139 (94.96%), Postives = 137/139 (98.56%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKLPKDAST-EKKKKKMKKGVETYKIYIFKVL 60
           MAP+AEKKPAEKKPAEKAPAGEKKPRAEKK+PKDAS+ +KKKK+MKK VETYKIYIFKVL
Sbjct: 1   MAPKAEKKPAEKKPAEKAPAGEKKPRAEKKIPKDASSSDKKKKRMKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lsi01G012850 vs. NCBI nr
Match: gi|449451070|ref|XP_004143285.1| (PREDICTED: probable histone H2B.3 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 4.0e-58
Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKLPKDAST-EKKKKKMKKGVETYKIYIFKVL 60
           MAPRAEKKPAEKKPAEKAPAGEKKPRAEKK+ KDAS+ +KKKK+ KK VETYKIYIFKVL
Sbjct: 1   MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lsi01G012850 vs. NCBI nr
Match: gi|330318558|gb|AEC10951.1| (histone H2B.2 [Camellia sinensis])

HSP 1 Score: 226.1 bits (575), Expect = 3.8e-56
Identity = 129/139 (92.81%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKP-AEKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKVL 60
           MAP+A+KKPAEKKP AEKAPA EKKP+AEKKLPK+ASTEKKKK+ KK VETYKIYIFKVL
Sbjct: 1   MAPKADKKPAEKKPAAEKAPA-EKKPKAEKKLPKEASTEKKKKRSKKSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 139
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of Lsi01G012850 vs. NCBI nr
Match: gi|743832539|ref|XP_011024306.1| (PREDICTED: probable histone H2B.1 [Populus euphratica])

HSP 1 Score: 225.7 bits (574), Expect = 4.9e-56
Identity = 130/140 (92.86%), Postives = 133/140 (95.00%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPA--EKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKV 60
           MAP+AEKKPAEKKPA  EKAPA EKKPRAEKKLPK+  +EKKKKK KK VETYKIYIFKV
Sbjct: 1   MAPKAEKKPAEKKPAAAEKAPA-EKKPRAEKKLPKEGGSEKKKKKSKKSVETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 139
           ELAKHAVSEGTKAVTKFTSS
Sbjct: 121 ELAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of Lsi01G012850 vs. NCBI nr
Match: gi|566182061|ref|XP_006379508.1| (hypothetical protein POPTR_0008s02990g [Populus trichocarpa])

HSP 1 Score: 224.9 bits (572), Expect = 8.4e-56
Identity = 129/140 (92.14%), Postives = 134/140 (95.71%), Query Frame = 1


Query: 1   MAPRAEKKPAEKKPA--EKAPAGEKKPRAEKKLPKDASTEKKKKKMKKGVETYKIYIFKV 60
           MAP+AEKKPAEKKPA  EKAPA EKKPRAEKKLPK+ ++EKKKK+ KK VETYKIYIFKV
Sbjct: 1   MAPKAEKKPAEKKPAAAEKAPA-EKKPRAEKKLPKEGASEKKKKRTKKNVETYKIYIFKV 60

Query: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120
           LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG
Sbjct: 61  LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 120

Query: 121 ELAKHAVSEGTKAVTKFTSS 139
           ELAKHAVSEGTKAVTKFTSS
Sbjct: 121 ELAKHAVSEGTKAVTKFTSS 139

The following BLAST results are available for this feature:

BLAST of Lsi01G012850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2B3_MEDTR	2.9e-56	90.37	Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3	[more]
H2B3_ARATH	1.6e-54	82.78	Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3	[more]
H2B_GOSHI	2.7e-54	85.14	Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3	[more]
H2B8_ARATH	2.7e-54	87.77	Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650 PE=1 SV=3	[more]
H2B1_MEDTR	3.5e-54	85.23	Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3	[more]

BLAST of Lsi01G012850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHB8_CUCSA	2.8e-58	94.24	Histone H2B OS=Cucumis sativus GN=Csa_6G448180 PE=3 SV=1	[more]
F4YF90_CAMSI	2.6e-56	92.81	Histone H2B OS=Camellia sinensis PE=2 SV=1	[more]
A9PC90_POPTR	5.8e-56	92.86	Histone H2B OS=Populus trichocarpa GN=POPTR_0010s23770g PE=2 SV=1	[more]
A9P8Q5_POPTR	5.8e-56	92.14	Histone H2B OS=Populus trichocarpa GN=POPTR_0008s02990g PE=2 SV=1	[more]
A0A067L9C8_JATCU	7.6e-56	92.81	Histone H2B OS=Jatropha curcas GN=JCGZ_01566 PE=3 SV=1	[more]

BLAST of Lsi01G012850 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28720.1	8.9e-56	82.78	Histone superfamily protein	[more]
AT3G53650.1	1.5e-55	87.77	Histone superfamily protein	[more]
AT3G46030.1	9.8e-55	85.62	Histone superfamily protein	[more]
AT2G37470.1	9.8e-55	88.49	Histone superfamily protein	[more]
AT3G45980.1	1.7e-54	83.44	Histone superfamily protein	[more]

BLAST of Lsi01G012850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125100\|ref\|XP_008462509.1\|	2.1e-59	94.96	PREDICTED: probable histone H2B.3 [Cucumis melo]	[more]
gi\|449451070\|ref\|XP_004143285.1\|	4.0e-58	94.24	PREDICTED: probable histone H2B.3 [Cucumis sativus]	[more]
gi\|330318558\|gb\|AEC10951.1\|	3.8e-56	92.81	histone H2B.2 [Camellia sinensis]	[more]
gi\|743832539\|ref\|XP_011024306.1\|	4.9e-56	92.86	PREDICTED: probable histone H2B.1 [Populus euphratica]	[more]
gi\|566182061\|ref\|XP_006379508.1\|	8.4e-56	92.14	hypothetical protein POPTR_0008s02990g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR000558	Histone_H2B

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0008150	biological_process
cellular_component	GO:0000788	nuclear nucleosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G012850.1	Lsi01G012850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 70..90 score: 2.7E-49coord: 92..109 score: 2.7E-49coord: 122..135 score: 2.7E-49coord: 109..122 score: 2.7E-49coord: 51..69 score: 2.7
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 8..138 score: 1.5E
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 41..137 score: 2.3
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 106..128 scor
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 6..114 score: 5.0
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 21..138 score: 5.1
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 22..138 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G012850	Csa6G448180	Cucumber (Chinese Long) v2	culsiB435
Lsi01G012850	CSPI06G24940	Wild cucumber (PI 183967)	cpilsiB440
Lsi01G012850	Cucsa.124890	Cucumber (Gy14) v1	cgylsiB190
Lsi01G012850	Cla018341	Watermelon (97103) v1	lsiwmB152
Lsi01G012850	MELO3C024490	Melon (DHL92) v3.5.1	lsimeB150
Lsi01G012850	ClCG04G009530	Watermelon (Charleston Gray)	lsiwcgB142
Lsi01G012850	MELO3C024490.2	Melon (DHL92) v3.6.1	lsimedB157
Lsi01G012850	Cla97C04G076300	Watermelon (97103) v2	lsiwmbB140
Lsi01G012850	Bhi03G001177	Wax gourd	lsiwgoB170
Lsi01G012850	CsGy6G024360	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G012850	CsaV3_6G040150	Cucumber (Chinese Long) v3	cuclsiB462

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G012850	Silver-seed gourd	carlsiB138
Lsi01G012850	Silver-seed gourd	carlsiB214
Lsi01G012850	Silver-seed gourd	carlsiB223
Lsi01G012850	Silver-seed gourd	carlsiB598
Lsi01G012850	Cucumber (Chinese Long) v3	cuclsiB185
Lsi01G012850	Cucumber (Chinese Long) v3	cuclsiB463
Lsi01G012850	Watermelon (97103) v2	lsiwmbB116
Lsi01G012850	Watermelon (97103) v2	lsiwmbB124
Lsi01G012850	Wax gourd	lsiwgoB147
Lsi01G012850	Wax gourd	lsiwgoB161
Lsi01G012850	Bottle gourd (USVL1VR-Ls)	lsilsiB025
Lsi01G012850	Bottle gourd (USVL1VR-Ls)	lsilsiB070
Lsi01G012850	Cucumber (Gy14) v1	cgylsiB626
Lsi01G012850	Cucurbita maxima (Rimu)	cmalsiB230
Lsi01G012850	Cucurbita maxima (Rimu)	cmalsiB518
Lsi01G012850	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G012850	Cucurbita maxima (Rimu)	cmalsiB747
Lsi01G012850	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G012850	Cucurbita moschata (Rifu)	cmolsiB218
Lsi01G012850	Cucurbita moschata (Rifu)	cmolsiB503
Lsi01G012850	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G012850	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G012850	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G012850	Cucurbita pepo (Zucchini)	cpelsiB324
Lsi01G012850	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G012850	Cucurbita pepo (Zucchini)	cpelsiB491
Lsi01G012850	Wild cucumber (PI 183967)	cpilsiB167
Lsi01G012850	Wild cucumber (PI 183967)	cpilsiB441
Lsi01G012850	Cucumber (Chinese Long) v2	culsiB168
Lsi01G012850	Cucumber (Chinese Long) v2	culsiB436
Lsi01G012850	Melon (DHL92) v3.5.1	lsimeB125
Lsi01G012850	Watermelon (Charleston Gray)	lsiwcgB118
Lsi01G012850	Watermelon (Charleston Gray)	lsiwcgB130
Lsi01G012850	Watermelon (97103) v1	lsiwmB127
Lsi01G012850	Watermelon (97103) v1	lsiwmB161
Lsi01G012850	Cucumber (Gy14) v2	cgyblsiB153
Lsi01G012850	Cucumber (Gy14) v2	cgyblsiB399
Lsi01G012850	Melon (DHL92) v3.6.1	lsimedB133
Lsi01G012850	Melon (DHL92) v3.6.1	lsimedB146