CsGy6G024360 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G024360
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Histone H2B
Location	Chr6 : 24216346 .. 24216765 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCAAGGGCAGAGAAGAAGCCCGCCGAGAAGAAACCAGCGGAGAAGGCTCCAGCCGGCGAGAAGAAGCCTCGAGCGGAGAAAAAGATTTCGAAAGATGCTTCGTCGTCAGATAAGAAGAAGAAGAGGACGAAGAAGAGCGTTGAGACCTACAAGATTTACATCTTCAAGGTCTTGAAGCAGGTTCATCCCGATATCGGAATCTCTAGCAAGGCCATGGGGATTATGAACAGTTTTATTAACGACATTTTTGAGAAGCTTGCTCAGGAATCGTCGCGATTGGCTAGGTATAACAAGAAGCCGACTATCACCTCTAGGGAAATCCAAACGGCTGTTCGGCTTGTGCTTCCTGGTGAACTTGCCAAGCATGCTGTATCGGAAGGGACGAAAGCAGTTACTAAATTCACCAGTTCTTAG

mRNA sequence

ATGGCTCCAAGGGCAGAGAAGAAGCCCGCCGAGAAGAAACCAGCGGAGAAGGCTCCAGCCGGCGAGAAGAAGCCTCGAGCGGAGAAAAAGATTTCGAAAGATGCTTCGTCGTCAGATAAGAAGAAGAAGAGGACGAAGAAGAGCGTTGAGACCTACAAGATTTACATCTTCAAGGTCTTGAAGCAGGTTCATCCCGATATCGGAATCTCTAGCAAGGCCATGGGGATTATGAACAGTTTTATTAACGACATTTTTGAGAAGCTTGCTCAGGAATCGTCGCGATTGGCTAGGTATAACAAGAAGCCGACTATCACCTCTAGGGAAATCCAAACGGCTGTTCGGCTTGTGCTTCCTGGTGAACTTGCCAAGCATGCTGTATCGGAAGGGACGAAAGCAGTTACTAAATTCACCAGTTCTTAG

Coding sequence (CDS)

ATGGCTCCAAGGGCAGAGAAGAAGCCCGCCGAGAAGAAACCAGCGGAGAAGGCTCCAGCCGGCGAGAAGAAGCCTCGAGCGGAGAAAAAGATTTCGAAAGATGCTTCGTCGTCAGATAAGAAGAAGAAGAGGACGAAGAAGAGCGTTGAGACCTACAAGATTTACATCTTCAAGGTCTTGAAGCAGGTTCATCCCGATATCGGAATCTCTAGCAAGGCCATGGGGATTATGAACAGTTTTATTAACGACATTTTTGAGAAGCTTGCTCAGGAATCGTCGCGATTGGCTAGGTATAACAAGAAGCCGACTATCACCTCTAGGGAAATCCAAACGGCTGTTCGGCTTGTGCTTCCTGGTGAACTTGCCAAGCATGCTGTATCGGAAGGGACGAAAGCAGTTACTAAATTCACCAGTTCTTAG

Protein sequence

MAPRAEKKPAEKKPAEKAPAGEKKPRAEKKISKDASSSDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

[Close]

BLAST of CsGy6G024360 vs. NCBI nr
Match: XP_004143285.1 (PREDICTED: probable histone H2B.3 [Cucumis sativus] >KGN48209.1 Histone H2B [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 5.1e-41
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MAPRAEKKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL 60
           MAPRAEKKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL
Sbjct: 1   MAPRAEKKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of CsGy6G024360 vs. NCBI nr
Match: ABK94031.1 (unknown [Populus trichocarpa] >PNT18249.1 hypothetical protein POPTR_010G230800v3 [Populus trichocarpa])

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 130/139 (93.53%), Postives = 131/139 (94.24%), Query Frame = 0


Query: 1   MAPRAEKKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL 60
           MAP+AEKKP      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ETYKIYIFKVL
Sbjct: 1   MAPKAEKKPAEKKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of CsGy6G024360 vs. NCBI nr
Match: XP_006379508.1 (probable histone H2B.3 [Populus trichocarpa] >ABK92758.1 unknown [Populus trichocarpa] >PNT22389.1 hypothetical protein POPTR_008G029900v3 [Populus trichocarpa])

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 132/139 (94.96%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MAPRAEKKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL 60
           MAP+AEKKP      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL
Sbjct: 1   MAPKAEKKPAEKKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of CsGy6G024360 vs. NCBI nr
Match: ABK96597.1 (unknown [Populus trichocarpa x Populus deltoides])

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 131/139 (94.24%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 1   MAPRAEKKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL 60
           MAP+AEKKP      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ETYKIYIFKVL
Sbjct: 1   MAPKAEKKPAEKKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of CsGy6G024360 vs. NCBI nr
Match: PNT22397.1 (hypothetical protein POPTR_008G030600v3 [Populus trichocarpa])

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 131/139 (94.24%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 1   MAPRAEKKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL 60
           MAP+AEKKP      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ETYKIYIFKVL
Sbjct: 1   MAPKAEKKPAEKKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of CsGy6G024360 vs. TAIR10
Match: AT1G07790.1 (Histone superfamily protein)

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-43
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 50  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 109
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREI
Sbjct: 59  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 118

Query: 110 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 119 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of CsGy6G024360 vs. TAIR10
Match: AT5G02570.1 (Histone superfamily protein)

HSP 1 Score: 172.6 bits (436), Expect = 1.8e-43
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 50  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 109
           ETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI
Sbjct: 43  ETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 102

Query: 110 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 103 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 132

[Close]

BLAST of CsGy6G024360 vs. TAIR10
Match: AT2G28720.1 (Histone superfamily protein)

HSP 1 Score: 171.8 bits (434), Expect = 3.0e-43
Identity = 88/90 (97.78%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 50  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 109
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREI
Sbjct: 62  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 121

Query: 110 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 122 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of CsGy6G024360 vs. TAIR10
Match: AT5G59910.1 (Histone superfamily protein)

HSP 1 Score: 171.8 bits (434), Expect = 3.0e-43
Identity = 88/90 (97.78%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 50  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 109
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 110 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CsGy6G024360 vs. TAIR10
Match: AT3G53650.1 (Histone superfamily protein)

HSP 1 Score: 171.4 bits (433), Expect = 3.9e-43
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 50  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 109
           ETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI
Sbjct: 49  ETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 108

Query: 110 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           QTAVRLVLPGEL+KHAVSEGTKAVTKFTSS
Sbjct: 109 QTAVRLVLPGELSKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of CsGy6G024360 vs. Swiss-Prot
Match: sp|Q1S9I9|H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-42
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 50  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 109
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI
Sbjct: 59  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 118

Query: 110 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 119 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of CsGy6G024360 vs. Swiss-Prot
Match: sp|Q1SU99|H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 173.7 bits (439), Expect = 1.4e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 50  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 109
           ETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI
Sbjct: 49  ETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 108

Query: 110 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 109 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 138

[Close]

BLAST of CsGy6G024360 vs. Swiss-Prot
Match: sp|Q9LQQ4|H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana OX=3702 GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 172.9 bits (437), Expect = 2.4e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 50  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 109
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREI
Sbjct: 59  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 118

Query: 110 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 119 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of CsGy6G024360 vs. Swiss-Prot
Match: sp|O65819|H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum OX=4081 GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.4e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 50  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 109
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREI
Sbjct: 48  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREI 107

Query: 110 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 108 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137

[Close]

BLAST of CsGy6G024360 vs. Swiss-Prot
Match: sp|O49118|H2B_CAPAN (Histone H2B OS=Capsicum annuum OX=4072 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 172.9 bits (437), Expect = 2.4e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 50  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 109
           ETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI
Sbjct: 56  ETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI 115

Query: 110 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 116 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of CsGy6G024360 vs. TrEMBL
Match: tr|A0A0A0KHB8|A0A0A0KHB8_CUCSA (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_6G448180 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.4e-41
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MAPRAEKKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL 60
           MAPRAEKKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL
Sbjct: 1   MAPRAEKKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of CsGy6G024360 vs. TrEMBL
Match: tr|A9P8Q5|A9P8Q5_POPTR (Histone H2B OS=Populus trichocarpa OX=3694 GN=POPTR_008G029900v3 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 7.6e-41
Identity = 132/139 (94.96%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MAPRAEKKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL 60
           MAP+AEKKP      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL
Sbjct: 1   MAPKAEKKPAEKKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of CsGy6G024360 vs. TrEMBL
Match: tr|A9PCC8|A9PCC8_POPTR (Histone H2B OS=Populus trichocarpa OX=3694 GN=POPTR_010G230800v3 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 7.6e-41
Identity = 130/139 (93.53%), Postives = 131/139 (94.24%), Query Frame = 0


Query: 1   MAPRAEKKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL 60
           MAP+AEKKP      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ETYKIYIFKVL
Sbjct: 1   MAPKAEKKPAEKKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of CsGy6G024360 vs. TrEMBL
Match: tr|A0A103XPM6|A0A103XPM6_CYNCS (Histone H2B OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_003328 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 7.6e-41
Identity = 130/139 (93.53%), Postives = 131/139 (94.24%), Query Frame = 0


Query: 1   MAPRAEKKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL 60
           MAP+AEKKP       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ETYKIYIFKVL
Sbjct: 1   MAPKAEKKPTEEKKTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

[Close]

BLAST of CsGy6G024360 vs. TrEMBL
Match: tr|A0A2U1LM69|A0A2U1LM69_ARTAN (Histone H2B OS=Artemisia annua OX=35608 GN=CTI12_AA476220 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 7.6e-41
Identity = 133/139 (95.68%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MAPRAEKKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIFKVL 60
           MAP+AEKKP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ETYKIYIFKVL
Sbjct: 1   MAPKAEKKPAEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVETYKIYIFKVL 60

Query: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120
           KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 61  KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGE 120

Query: 121 LAKHAVSEGTKAVTKFTSS 140
           LAKHAVSEGTKAVTKFTSS
Sbjct: 121 LAKHAVSEGTKAVTKFTSS 139

The following BLAST results are available for this feature:

BLAST of CsGy6G024360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143285.1	5.1e-41	100.00	PREDICTED: probable histone H2B.3 [Cucumis sativus] >KGN48209.1 Histone H2B [Cuc...	[more]
ABK94031.1	1.1e-40	93.53	unknown [Populus trichocarpa] >PNT18249.1 hypothetical protein POPTR_010G230800v...	[more]
XP_006379508.1	1.1e-40	94.96	probable histone H2B.3 [Populus trichocarpa] >ABK92758.1 unknown [Populus tricho...	[more]
ABK96597.1	1.1e-40	94.24	unknown [Populus trichocarpa x Populus deltoides]	[more]
PNT22397.1	1.1e-40	94.24	hypothetical protein POPTR_008G030600v3 [Populus trichocarpa]	[more]

BLAST of CsGy6G024360 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07790.1	1.3e-43	98.89	Histone superfamily protein	[more]
AT5G02570.1	1.8e-43	98.89	Histone superfamily protein	[more]
AT2G28720.1	3.0e-43	97.78	Histone superfamily protein	[more]
AT5G59910.1	3.0e-43	97.78	Histone superfamily protein	[more]
AT3G53650.1	3.9e-43	97.78	Histone superfamily protein	[more]

BLAST of CsGy6G024360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q1S9I9\|H2B1_MEDTR	1.1e-42	100.00	Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
sp\|Q1SU99\|H2B3_MEDTR	1.4e-42	98.89	Probable histone H2B.3 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
sp\|Q9LQQ4\|H2B1_ARATH	2.4e-42	98.89	Histone H2B.1 OS=Arabidopsis thaliana OX=3702 GN=At1g07790 PE=1 SV=3	[more]
sp\|O65819\|H2B3_SOLLC	2.4e-42	98.89	Histone H2B.3 (Fragment) OS=Solanum lycopersicum OX=4081 GN=H2B-3 PE=2 SV=1	[more]
sp\|O49118\|H2B_CAPAN	2.4e-42	98.89	Histone H2B OS=Capsicum annuum OX=4072 GN=HIS2B PE=2 SV=3	[more]

BLAST of CsGy6G024360 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KHB8\|A0A0A0KHB8_CUCSA	3.4e-41	100.00	Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_6G448180 PE=3 SV=1	[more]
tr\|A9P8Q5\|A9P8Q5_POPTR	7.6e-41	94.96	Histone H2B OS=Populus trichocarpa OX=3694 GN=POPTR_008G029900v3 PE=2 SV=1	[more]
tr\|A9PCC8\|A9PCC8_POPTR	7.6e-41	93.53	Histone H2B OS=Populus trichocarpa OX=3694 GN=POPTR_010G230800v3 PE=2 SV=1	[more]
tr\|A0A103XPM6\|A0A103XPM6_CYNCS	7.6e-41	93.53	Histone H2B OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_003328 PE=3 SV=...	[more]
tr\|A0A2U1LM69\|A0A2U1LM69_ARTAN	7.6e-41	95.68	Histone H2B OS=Artemisia annua OX=35608 GN=CTI12_AA476220 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold
IPR000558	Histone_H2B

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G024360.1	CsGy6G024360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 123..136 score: 92.65 coord: 93..110 score: 79.1 coord: 71..91 score: 75.74 coord: 110..123 score: 92.45 coord: 52..70 score: 80.55
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 42..138 e-value: 4.6E-73 score: 258.7
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 1..139
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 107..129
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 4..139 e-value: 1.0E-59 score: 202.0
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 25..139
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 5..115 e-value: 2.1E-22 score: 79.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	PANTHER	PTHR23428:SF155	HISTONE H2B.5-RELATED	coord: 1..139

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G024360	Cla018341	Watermelon (97103) v1	cgybwmB472
CsGy6G024360	Csa6G448180	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G024360	MELO3C024490	Melon (DHL92) v3.5.1	cgybmeB446
CsGy6G024360	ClCG04G009530	Watermelon (Charleston Gray)	cgybwcgB426
CsGy6G024360	CSPI06G24940	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G024360	Lsi01G012850	Bottle gourd (USVL1VR-Ls)	cgyblsiB398
CsGy6G024360	MELO3C024490.2	Melon (DHL92) v3.6.1	cgybmedB443
CsGy6G024360	CsaV3_6G040150	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G024360	Cla97C04G076300	Watermelon (97103) v2	cgybwmbB431
CsGy6G024360	Bhi03G001177	Wax gourd	cgybwgoB599

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G024360	Cucumber (Gy14) v2	cgybcgybB100
CsGy6G024360	Cucumber (Gy14) v2	cgybcgybB151
CsGy6G024360	Cucurbita maxima (Rimu)	cgybcmaB729
CsGy6G024360	Cucurbita maxima (Rimu)	cgybcmaB795
CsGy6G024360	Cucurbita maxima (Rimu)	cgybcmaB831
CsGy6G024360	Cucurbita maxima (Rimu)	cgybcmaB861
CsGy6G024360	Cucurbita moschata (Rifu)	cgybcmoB712
CsGy6G024360	Cucurbita moschata (Rifu)	cgybcmoB773
CsGy6G024360	Cucurbita moschata (Rifu)	cgybcmoB811
CsGy6G024360	Cucurbita moschata (Rifu)	cgybcmoB843
CsGy6G024360	Cucurbita pepo (Zucchini)	cgybcpeB710
CsGy6G024360	Cucurbita pepo (Zucchini)	cgybcpeB773
CsGy6G024360	Cucurbita pepo (Zucchini)	cgybcpeB810
CsGy6G024360	Cucurbita pepo (Zucchini)	cgybcpeB826
CsGy6G024360	Cucumber (Chinese Long) v2	cgybcuB254
CsGy6G024360	Cucumber (Chinese Long) v2	cgybcuB283
CsGy6G024360	Bottle gourd (USVL1VR-Ls)	cgyblsiB384
CsGy6G024360	Melon (DHL92) v3.5.1	cgybmeB373
CsGy6G024360	Melon (DHL92) v3.6.1	cgybmedB374
CsGy6G024360	Melon (DHL92) v3.6.1	cgybmedB420
CsGy6G024360	Watermelon (Charleston Gray)	cgybwcgB392
CsGy6G024360	Watermelon (Charleston Gray)	cgybwcgB406
CsGy6G024360	Watermelon (97103) v1	cgybwmB423
CsGy6G024360	Watermelon (97103) v1	cgybwmB483
CsGy6G024360	Wild cucumber (PI 183967)	cgybcpiB263
CsGy6G024360	Wild cucumber (PI 183967)	cgybcpiB289
CsGy6G024360	Silver-seed gourd	carcgybB0255
CsGy6G024360	Silver-seed gourd	carcgybB0264
CsGy6G024360	Silver-seed gourd	carcgybB0654
CsGy6G024360	Cucumber (Chinese Long) v3	cgybcucB268
CsGy6G024360	Cucumber (Chinese Long) v3	cgybcucB300
CsGy6G024360	Watermelon (97103) v2	cgybwmbB398
CsGy6G024360	Watermelon (97103) v2	cgybwmbB414
CsGy6G024360	Wax gourd	cgybwgoB504
CsGy6G024360	Wax gourd	cgybwgoB586