Csa6G425170 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G425170
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Late embryogenesis abundant hydroxyproline-rich glycoprotein; contains IPR004864 (Late embryogenesis abundant protein, LEA-14)
Location	Chr6 : 19900525 .. 19901452 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTATTTTCGTCATTTACTATGGCATCCCACTCTGTCACTACACCTCATCTTTCCATTTCCTTCATTCTCTCTCTAACTTTACTTTCTCAAAATCTCACCCATCTCTCCTTCCTCCTTCCGCCGGCGAAGAAGAAGATGGGGAAAAAACGTAACTGGAGCTGGACCTCCGCTCTTGTCGGAGCGGCGTCGGCAATTGCAGCCACGGCCATCATTTCCGCAAAGCCCAAGGACCCCACCTTTCACTTGATCTCAATTAAATTCACTTCCTTCAAGCTCAAGCCGCCGGTGGTGGACACCGAGCTTATCCTCACCGTCCACGTCACCAACCCCAACGTCGCTCCCATCCACTACTCCTCCACCGCTATGTCCATTTTCTACGAGGGTTCCCTCCTCGGGTCGGCCCAGGTGGATGCCGGTTCGCAGCAGCCCCGGTCGTGTCAGGTTCTACGACTTCCAGCCCGGCTGGACGGCCTGAAACTGGCCCACCACGGCAGCCGGTTCATCTCCGACGTGGCGAAGCGAGAGATGGTTCTGGATGCGAGTGTGGACATTGGGGGTTTTGCGAGAGTGCTGTGGTGGAGTCACAAATTCAAGGTCCACGTGGACAGCCATCTCACCGTTGATCCCGTCTTCCTTGATGTCCTTGATCAGGAAAACACTTCTCAACTTGAGCTCTTTCTTAATTAGTAATAATAATTAGTTCCCTTCTCTTTCTATGATATTGTTAATGGATATTTTTGGTACACAAATTCATAACCATAGTTCCCACCCCACCCTGTTTCATTATGTTATATTAATTCATCTTTGCATTTCATAGTTCACTATCTTTTCTTAATGTTTTTGGTTCATTGTAGGATTATCAATTTTCTTCTATTTTTGTTTAAACATTAGGGTTTTGTGAAATTAAATACCATTAATTATTGCAT

mRNA sequence

ATGGCATCCCACTCTGTCACTACACCTCATCTTTCCATTTCCTTCATTCTCTCTCTAACTTTACTTTCTCAAAATCTCACCCATCTCTCCTTCCTCCTTCCGCCGGCGAAGAAGAAGATGGGGAAAAAACGTAACTGGAGCTGGACCTCCGCTCTTGTCGGAGCGGCGTCGGCAATTGCAGCCACGGCCATCATTTCCGCAAAGCCCAAGGACCCCACCTTTCACTTGATCTCAATTAAATTCACTTCCTTCAAGCTCAAGCCGCCGGTGGTGGACACCGAGCTTATCCTCACCGTCCACGTCACCAACCCCAACGTCGCTCCCATCCACTACTCCTCCACCGCTATGTCCATTTTCTACGAGGGTTCCCTCCTCGGGTCGGCCCAGGTGGATGCCGGTTCGCAGCAGCCCCGGTCGTGTCAGGTTCTACGACTTCCAGCCCGGCTGGACGGCCTGAAACTGGCCCACCACGGCAGCCGGTTCATCTCCGACGTGGCGAAGCGAGAGATGGTTCTGGATGCGAGTGTGGACATTGGGGGTTTTGCGAGAGTGCTGTGGTGGAGTCACAAATTCAAGGTCCACGTGGACAGCCATCTCACCGTTGATCCCGTCTTCCTTGATGTCCTTGATCAGGAAAACACTTCTCAACTTGAGCTCTTTCTTAATTAG

Coding sequence (CDS)

ATGGCATCCCACTCTGTCACTACACCTCATCTTTCCATTTCCTTCATTCTCTCTCTAACTTTACTTTCTCAAAATCTCACCCATCTCTCCTTCCTCCTTCCGCCGGCGAAGAAGAAGATGGGGAAAAAACGTAACTGGAGCTGGACCTCCGCTCTTGTCGGAGCGGCGTCGGCAATTGCAGCCACGGCCATCATTTCCGCAAAGCCCAAGGACCCCACCTTTCACTTGATCTCAATTAAATTCACTTCCTTCAAGCTCAAGCCGCCGGTGGTGGACACCGAGCTTATCCTCACCGTCCACGTCACCAACCCCAACGTCGCTCCCATCCACTACTCCTCCACCGCTATGTCCATTTTCTACGAGGGTTCCCTCCTCGGGTCGGCCCAGGTGGATGCCGGTTCGCAGCAGCCCCGGTCGTGTCAGGTTCTACGACTTCCAGCCCGGCTGGACGGCCTGAAACTGGCCCACCACGGCAGCCGGTTCATCTCCGACGTGGCGAAGCGAGAGATGGTTCTGGATGCGAGTGTGGACATTGGGGGTTTTGCGAGAGTGCTGTGGTGGAGTCACAAATTCAAGGTCCACGTGGACAGCCATCTCACCGTTGATCCCGTCTTCCTTGATGTCCTTGATCAGGAAAACACTTCTCAACTTGAGCTCTTTCTTAATTAG

Protein sequence

MASHSVTTPHLSISFILSLTLLSQNLTHLSFLLPPAKKKMGKKRNWSWTSALVGAASAIAATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTVHVTNPNVAPIHYSSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKREMVLDASVDIGGFARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLELFLN*

Homology

[Close]

BLAST of Csa6G425170 vs. TrEMBL
Match: A0A0A0KGW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425170 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 1.1e-120
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1


Query: 1   MASHSVTTPHLSISFILSLTLLSQNLTHLSFLLPPAKKKMGKKRNWSWTSALVGAASAIA 60
           MASHSVTTPHLSISFILSLTLLSQNLTHLSFLLPPAKKKMGKKRNWSWTSALVGAASAIA
Sbjct: 1   MASHSVTTPHLSISFILSLTLLSQNLTHLSFLLPPAKKKMGKKRNWSWTSALVGAASAIA 60

Query: 61  ATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTVHVTNPNVAPIHYSSTAMSIFY 120
           ATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTVHVTNPNVAPIHYSSTAMSIFY
Sbjct: 61  ATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTVHVTNPNVAPIHYSSTAMSIFY 120

Query: 121 EGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKREMVLDASVDIGG 180
           EGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKREMVLDASVDIGG
Sbjct: 121 EGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKREMVLDASVDIGG 180

Query: 181 FARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLELFLN 223
           FARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLELFLN
Sbjct: 181 FARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLELFLN 222

[Close]

BLAST of Csa6G425170 vs. TrEMBL
Match: A0A0S3SBZ9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G164300 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 3.0e-78
Identity = 142/181 (78.45%), Postives = 162/181 (89.50%), Query Frame = 1


Query: 40  MGKKRNWSWTSALVGAASAIAATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTV 99
           MGKK  WSW+SA++GAASA+AATA+ISAKPKDPTFHLISI  TS KL  P++D E++LTV
Sbjct: 1   MGKKVKWSWSSAIIGAASAVAATALISAKPKDPTFHLISISMTSLKLNLPLLDAEVLLTV 60

Query: 100 HVTNPNVAPIHYSSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGS 159
           HVTNPN+API YSST+MSIFYEGSLLGSAQV AGSQ PRSCQ+LRLPARL GL+LAHH  
Sbjct: 61  HVTNPNIAPIDYSSTSMSIFYEGSLLGSAQVQAGSQPPRSCQLLRLPARLHGLQLAHHAK 120

Query: 160 RFISDVAKREMVLDASVDIGGFARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLEL 219
           RF+ DVA+REMVLDASVDI G ARV+WW H FKVHVDSH+TVDPVFLDV+DQENTS+LE+
Sbjct: 121 RFLQDVARREMVLDASVDIAGIARVMWWDHNFKVHVDSHVTVDPVFLDVIDQENTSELEV 180

Query: 220 F 221
           F
Sbjct: 181 F 181

[Close]

BLAST of Csa6G425170 vs. TrEMBL
Match: A0A0L9V6C7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g136500 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 3.0e-78
Identity = 142/181 (78.45%), Postives = 162/181 (89.50%), Query Frame = 1


Query: 40  MGKKRNWSWTSALVGAASAIAATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTV 99
           MGKK  WSW+SA++GAASA+AATA+ISAKPKDPTFHLISI  TS KL  P++D E++LTV
Sbjct: 1   MGKKVKWSWSSAIIGAASAVAATALISAKPKDPTFHLISISMTSLKLNLPLLDAEVLLTV 60

Query: 100 HVTNPNVAPIHYSSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGS 159
           HVTNPN+API YSST+MSIFYEGSLLGSAQV AGSQ PRSCQ+LRLPARL GL+LAHH  
Sbjct: 61  HVTNPNIAPIDYSSTSMSIFYEGSLLGSAQVQAGSQPPRSCQLLRLPARLHGLQLAHHAK 120

Query: 160 RFISDVAKREMVLDASVDIGGFARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLEL 219
           RF+ DVA+REMVLDASVDI G ARV+WW H FKVHVDSH+TVDPVFLDV+DQENTS+LE+
Sbjct: 121 RFLQDVARREMVLDASVDIAGIARVMWWDHNFKVHVDSHVTVDPVFLDVIDQENTSELEV 180

Query: 220 F 221
           F
Sbjct: 181 F 181

[Close]

BLAST of Csa6G425170 vs. TrEMBL
Match: W9QJ47_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022324 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 3.0e-78
Identity = 144/182 (79.12%), Postives = 161/182 (88.46%), Query Frame = 1


Query: 40  MGKKRNWSWTSALVGAASAIAATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTV 99
           MGKK  WSW+SAL+GAASA+AATA+I AKPKDPTFHLISI  TSFKL  PV+D ELILTV
Sbjct: 1   MGKKVKWSWSSALIGAASAVAATALIGAKPKDPTFHLISINLTSFKLNLPVLDAELILTV 60

Query: 100 HVTNPNVAPIHYSSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGS 159
           HVTNPN++PIHYSST MSIFY+G LLGSA V AGSQ PRSCQ+LRLPARLDGL+LAHH +
Sbjct: 61  HVTNPNISPIHYSSTTMSIFYQGELLGSADVQAGSQPPRSCQLLRLPARLDGLRLAHHAA 120

Query: 160 RFISDVAKREMVLDASVDIGGFARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLEL 219
           RF SDVAKREM+LDA+VDIGG ARVLWW HKFKVHVDSH+TVDP+FLDV+ QEN S+L L
Sbjct: 121 RFFSDVAKREMLLDAAVDIGGTARVLWWDHKFKVHVDSHVTVDPLFLDVIGQENKSELTL 180

Query: 220 FL 222
            L
Sbjct: 181 NL 182

[Close]

BLAST of Csa6G425170 vs. TrEMBL
Match: V7AK04_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G095000g PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 6.7e-78
Identity = 141/181 (77.90%), Postives = 164/181 (90.61%), Query Frame = 1


Query: 40  MGKKRNWSWTSALVGAASAIAATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTV 99
           MGKK  WSW+SA++GAASA+AATA+ISAKPKDPTFHLISI FTS KL  P++D E++LTV
Sbjct: 1   MGKKVKWSWSSAIIGAASAVAATALISAKPKDPTFHLISINFTSLKLNLPLLDAEVLLTV 60

Query: 100 HVTNPNVAPIHYSSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGS 159
           HVTNPN+APIHYSST+MSIFYEGSLLGSAQV AGSQ PRSCQ+LRLPARL  L+LA+H +
Sbjct: 61  HVTNPNIAPIHYSSTSMSIFYEGSLLGSAQVQAGSQPPRSCQLLRLPARLHALQLANHAT 120

Query: 160 RFISDVAKREMVLDASVDIGGFARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLEL 219
           RF+ DVA+REMVLDA+VDI G ARV+WW H FKVHVDSH+TVDPVFLDV+DQENTS+LE+
Sbjct: 121 RFLHDVARREMVLDAAVDIAGAARVMWWDHNFKVHVDSHVTVDPVFLDVIDQENTSELEV 180

Query: 220 F 221
           F
Sbjct: 181 F 181

[Close]

BLAST of Csa6G425170 vs. TAIR10
Match: AT3G44380.1 (AT3G44380.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 256.9 bits (655), Expect = 1.1e-68
Identity = 123/180 (68.33%), Postives = 148/180 (82.22%), Query Frame = 1


Query: 42  KKRNWSWTSALVGAASAIAATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTVHV 101
           +K  WSW+SAL+GAASA AA +++SAKPKDPTFHLISI  TS KL  PV+D EL+LTVHV
Sbjct: 6   QKVKWSWSSALIGAASATAAASLLSAKPKDPTFHLISIDLTSLKLNLPVLDAELMLTVHV 65

Query: 102 TNPNVAPIHYSSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRF 161
           TNPN+A IHYSST M+I Y+G++LGSA+V AGSQ  RSCQ+LRLPARLDG++LA H  +F
Sbjct: 66  TNPNIAAIHYSSTKMTILYDGTVLGSAEVKAGSQPARSCQLLRLPARLDGMELAQHARQF 125

Query: 162 ISDVAKREMVLDASVDIGGFARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLELFL 221
            SDVA REM L+A + I G A+VLWW H F+VHVDS +TVDPVFLDV+ QEN SQ++LFL
Sbjct: 126 FSDVANREMKLEAKLTIEGAAKVLWWDHSFRVHVDSFVTVDPVFLDVIGQENKSQMDLFL 185

[Close]

BLAST of Csa6G425170 vs. TAIR10
Match: AT4G13270.1 (AT4G13270.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 48.9 bits (115), Expect = 4.7e-06
Identity = 41/170 (24.12%), Postives = 69/170 (40.59%), Query Frame = 1


Query: 50  SALVGAASAIAATAIISAKPKDPTFHLISIKFTSFKLKPP---VVDTELILTVHVTNPNV 109
           S L  A   + + A+    P DP   +  I      +       +D    LT+ V N + 
Sbjct: 46  SLLFTAVILLLSAAVYLLYPSDPDITVSRINLNHISVVDSHKIALDLSFSLTIKVRNRDF 105

Query: 110 APIHYSSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVA 169
             + Y S  +SI Y G  LG  +   G  + R    +     LDGL++ H     I D+A
Sbjct: 106 FSLDYDSLVVSIGYRGRELGLVKSKGGHLKARDSSYIDATLELDGLEVVHDVIYLIGDLA 165

Query: 170 KREMVLDASVDIGGFARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQ 217
           K  +  D    + G   VL     F + +   ++ + V+++V +Q+ + Q
Sbjct: 166 KGVIPFDTIAQVQGDLGVL----LFNIPIQGKVSCE-VYVNVNNQKISHQ 210

[Close]

BLAST of Csa6G425170 vs. NCBI nr
Match: gi|700192825|gb|KGN48029.1| (hypothetical protein Csa_6G425170 [Cucumis sativus])

HSP 1 Score: 440.7 bits (1132), Expect = 1.6e-120
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1


Query: 1   MASHSVTTPHLSISFILSLTLLSQNLTHLSFLLPPAKKKMGKKRNWSWTSALVGAASAIA 60
           MASHSVTTPHLSISFILSLTLLSQNLTHLSFLLPPAKKKMGKKRNWSWTSALVGAASAIA
Sbjct: 1   MASHSVTTPHLSISFILSLTLLSQNLTHLSFLLPPAKKKMGKKRNWSWTSALVGAASAIA 60

Query: 61  ATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTVHVTNPNVAPIHYSSTAMSIFY 120
           ATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTVHVTNPNVAPIHYSSTAMSIFY
Sbjct: 61  ATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTVHVTNPNVAPIHYSSTAMSIFY 120

Query: 121 EGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKREMVLDASVDIGG 180
           EGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKREMVLDASVDIGG
Sbjct: 121 EGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKREMVLDASVDIGG 180

Query: 181 FARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLELFLN 223
           FARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLELFLN
Sbjct: 181 FARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLELFLN 222

[Close]

BLAST of Csa6G425170 vs. NCBI nr
Match: gi|659097347|ref|XP_008449575.1| (PREDICTED: uncharacterized protein LOC103491417 [Cucumis melo])

HSP 1 Score: 404.8 bits (1039), Expect = 9.6e-110
Identity = 206/216 (95.37%), Postives = 210/216 (97.22%), Query Frame = 1


Query: 7   TTPHLSISFILSLTLLSQNLTHLSFLLPPAKKKMGKKRNWSWTSALVGAASAIAATAIIS 66
           +T HLSIS ILSLTLLSQNLT  SFLLPPAKK MGKKRNWSW+SALVGAASA+AATAIIS
Sbjct: 68  STAHLSISLILSLTLLSQNLTDPSFLLPPAKK-MGKKRNWSWSSALVGAASAVAATAIIS 127

Query: 67  AKPKDPTFHLISIKFTSFKLKPPVVDTELILTVHVTNPNVAPIHYSSTAMSIFYEGSLLG 126
           AKPKDPTFHLISIKFTSFKLKPPVVD ELILTVHVTNPNVAPIHYSSTAMSIFYEGSLLG
Sbjct: 128 AKPKDPTFHLISIKFTSFKLKPPVVDAELILTVHVTNPNVAPIHYSSTAMSIFYEGSLLG 187

Query: 127 SAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKREMVLDASVDIGGFARVLW 186
           SAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKREMVLDASVDIGGFA+VLW
Sbjct: 188 SAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKREMVLDASVDIGGFAKVLW 247

Query: 187 WSHKFKVHVDSHLTVDPVFLDVLDQENTSQLELFLN 223
           WSHKFKVHVDSHLTVDPVFLDVLDQENTSQLELFLN
Sbjct: 248 WSHKFKVHVDSHLTVDPVFLDVLDQENTSQLELFLN 282

[Close]

BLAST of Csa6G425170 vs. NCBI nr
Match: gi|449444795|ref|XP_004140159.1| (PREDICTED: uncharacterized protein LOC101218134 [Cucumis sativus])

HSP 1 Score: 366.7 bits (940), Expect = 2.9e-98
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1


Query: 40  MGKKRNWSWTSALVGAASAIAATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTV 99
           MGKKRNWSWTSALVGAASAIAATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTV
Sbjct: 1   MGKKRNWSWTSALVGAASAIAATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTV 60

Query: 100 HVTNPNVAPIHYSSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGS 159
           HVTNPNVAPIHYSSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGS
Sbjct: 61  HVTNPNVAPIHYSSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGS 120

Query: 160 RFISDVAKREMVLDASVDIGGFARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLEL 219
           RFISDVAKREMVLDASVDIGGFARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLEL
Sbjct: 121 RFISDVAKREMVLDASVDIGGFARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLEL 180

Query: 220 FLN 223
           FLN
Sbjct: 181 FLN 183

[Close]

BLAST of Csa6G425170 vs. NCBI nr
Match: gi|950941629|ref|XP_014493446.1| (PREDICTED: uncharacterized protein LOC106755749 [Vigna radiata var. radiata])

HSP 1 Score: 299.7 bits (766), Expect = 4.3e-78
Identity = 142/181 (78.45%), Postives = 162/181 (89.50%), Query Frame = 1


Query: 40  MGKKRNWSWTSALVGAASAIAATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTV 99
           MGKK  WSW+SA++GAASA+AATA+ISAKPKDPTFHLISI  TS KL  P++D E++LTV
Sbjct: 1   MGKKVKWSWSSAIIGAASAVAATALISAKPKDPTFHLISINMTSLKLNLPLLDAEVLLTV 60

Query: 100 HVTNPNVAPIHYSSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGS 159
           HVTNPN+API YSST+MSIFYEGSLLGSAQV AGSQ PRSCQ+LRLPARL GL+LAHH  
Sbjct: 61  HVTNPNIAPIDYSSTSMSIFYEGSLLGSAQVQAGSQPPRSCQLLRLPARLHGLQLAHHAK 120

Query: 160 RFISDVAKREMVLDASVDIGGFARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLEL 219
           RF+ DVA+REMVLDASVDI G ARV+WW H FKVHVDSH+TVDPVFLDV+DQENTS+LE+
Sbjct: 121 RFLQDVARREMVLDASVDIAGIARVMWWDHNFKVHVDSHVTVDPVFLDVIDQENTSELEV 180

Query: 220 F 221
           F
Sbjct: 181 F 181

[Close]

BLAST of Csa6G425170 vs. NCBI nr
Match: gi|920708541|gb|KOM50538.1| (hypothetical protein LR48_Vigan08g136500 [Vigna angularis])

HSP 1 Score: 299.7 bits (766), Expect = 4.3e-78
Identity = 142/181 (78.45%), Postives = 162/181 (89.50%), Query Frame = 1


Query: 40  MGKKRNWSWTSALVGAASAIAATAIISAKPKDPTFHLISIKFTSFKLKPPVVDTELILTV 99
           MGKK  WSW+SA++GAASA+AATA+ISAKPKDPTFHLISI  TS KL  P++D E++LTV
Sbjct: 1   MGKKVKWSWSSAIIGAASAVAATALISAKPKDPTFHLISISMTSLKLNLPLLDAEVLLTV 60

Query: 100 HVTNPNVAPIHYSSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGS 159
           HVTNPN+API YSST+MSIFYEGSLLGSAQV AGSQ PRSCQ+LRLPARL GL+LAHH  
Sbjct: 61  HVTNPNIAPIDYSSTSMSIFYEGSLLGSAQVQAGSQPPRSCQLLRLPARLHGLQLAHHAK 120

Query: 160 RFISDVAKREMVLDASVDIGGFARVLWWSHKFKVHVDSHLTVDPVFLDVLDQENTSQLEL 219
           RF+ DVA+REMVLDASVDI G ARV+WW H FKVHVDSH+TVDPVFLDV+DQENTS+LE+
Sbjct: 121 RFLQDVARREMVLDASVDIAGIARVMWWDHNFKVHVDSHVTVDPVFLDVIDQENTSELEV 180

Query: 220 F 221
           F
Sbjct: 181 F 181

The following BLAST results are available for this feature:

BLAST of Csa6G425170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGW5_CUCSA	1.1e-120	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425170 PE=4 SV=1	[more]
A0A0S3SBZ9_PHAAN	3.0e-78	78.45	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G164300 PE=...	[more]
A0A0L9V6C7_PHAAN	3.0e-78	78.45	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g136500 PE=4 SV=1	[more]
W9QJ47_9ROSA	3.0e-78	79.12	Uncharacterized protein OS=Morus notabilis GN=L484_022324 PE=4 SV=1	[more]
V7AK04_PHAVU	6.7e-78	77.90	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G095000g PE=4 SV=1	[more]

BLAST of Csa6G425170 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G44380.1	1.1e-68	68.33	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT4G13270.1	4.7e-06	24.12	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of Csa6G425170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192825\|gb\|KGN48029.1\|	1.6e-120	100.00	hypothetical protein Csa_6G425170 [Cucumis sativus]	[more]
gi\|659097347\|ref\|XP_008449575.1\|	9.6e-110	95.37	PREDICTED: uncharacterized protein LOC103491417 [Cucumis melo]	[more]
gi\|449444795\|ref\|XP_004140159.1\|	2.9e-98	100.00	PREDICTED: uncharacterized protein LOC101218134 [Cucumis sativus]	[more]
gi\|950941629\|ref\|XP_014493446.1\|	4.3e-78	78.45	PREDICTED: uncharacterized protein LOC106755749 [Vigna radiata var. radiata]	[more]
gi\|920708541\|gb\|KOM50538.1\|	4.3e-78	78.45	hypothetical protein LR48_Vigan08g136500 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2
IPR013990	WHy-dom

Vocabulary: **Biological Process**
Term	Definition
GO:0009269	response to desiccation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009269	response to desiccation
biological_process	GO:0007032	endosome organization
biological_process	GO:0008152	metabolic process
biological_process	GO:0010091	trichome branching
biological_process	GO:0007033	vacuole organization
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005771	multivesicular body
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008568	microtubule-severing ATPase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU102622	cucumber EST collection version 3.0	transcribed_cluster
CU171942	cucumber EST collection version 3.0	transcribed_cluster
CU176306	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G425170.1	Csa6G425170.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU176306	CU176306	transcribed_cluster
CU102622	CU102622	transcribed_cluster
CU171942	CU171942	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 98..196 score: 8.5
IPR013990	Water stress and hypersensitive response domain	SMART	SM00769	why	coord: 79..194 score: 7.0
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 36..221 score: 4.4E
None	No IPR available	PANTHER	PTHR31852:SF7	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 36..221 score: 4.4E
None	No IPR available	unknown	SSF117070	LEA14-like	coord: 59..195 score: 4.97

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G425170	Cla008639	Watermelon (97103) v1	cuwmB513
Csa6G425170	MELO3C014499	Melon (DHL92) v3.5.1	cumeB491
Csa6G425170	ClCG02G022220	Watermelon (Charleston Gray)	cuwcgB438
Csa6G425170	Lsi10G011560	Bottle gourd (USVL1VR-Ls)	culsiB414
Csa6G425170	MELO3C014499.2	Melon (DHL92) v3.6.1	cumedB471
Csa6G425170	Cla97C02G048310	Watermelon (97103) v2	cuwmbB428
Csa6G425170	Bhi10G000014	Wax gourd	cuwgoB616
Csa6G425170	CSPI06G23220	Wild cucumber (PI 183967)	cpicuB313
Csa6G425170	Cucsa.185690	Cucumber (Gy14) v1	cgycuB282
Csa6G425170	CmaCh02G013230	Cucurbita maxima (Rimu)	cmacuB630
Csa6G425170	CmaCh20G001630	Cucurbita maxima (Rimu)	cmacuB562
Csa6G425170	CmoCh20G001790	Cucurbita moschata (Rifu)	cmocuB552
Csa6G425170	CmoCh02G013630	Cucurbita moschata (Rifu)	cmocuB620
Csa6G425170	Cp4.1LG05g04110	Cucurbita pepo (Zucchini)	cpecuB758
Csa6G425170	Cp4.1LG16g08120	Cucurbita pepo (Zucchini)	cpecuB281
Csa6G425170	CsGy6G022460	Cucumber (Gy14) v2	cgybcuB281
Csa6G425170	Carg18425	Silver-seed gourd	carcuB0445
Csa6G425170	Carg02638	Silver-seed gourd	carcuB0941

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None