CU176306 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU176306
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	Chr6 : 19900876 .. 19901053 (+)
Sequence length	178

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GACTCCTCCACCGCTATGTCCATTTTCTACGAGGGTTCCCTCCTCGGGTCGGCCCAGGTGGATGCCGGTTCGCAGCAGCCCCGGTCGTGTCAGGTTCTACGACTTCCAGCCCGGCTGGACGGCCTGAAACTGGCCCACCACGGCAGCCGGTTCATCTCCGACGTGGCGAAGCGAGAGA

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU176306 vs. TrEMBL
Match: A0A0A0KGW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425170 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.6e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 4   SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE 63
           SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE
Sbjct: 112 SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE 169

Query: 64   123
           
Sbjct: 172  169

Query: 124  178
           
Sbjct: 232  169

[Close]

BLAST of CU176306 vs. TrEMBL
Match: W9QJ47_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022324 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.6e-18
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1


Query: 4   SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE 63
           SST MSIFY+G LLGSA V AGSQ PRSCQ+LRLPARLDGL+LAHH +RF SDVAKRE
Sbjct: 73  SSTTMSIFYQGELLGSADVQAGSQPPRSCQLLRLPARLDGLRLAHHAARFFSDVAKRE 130

Query: 64   123
           
Sbjct: 133  130

Query: 124  178
           
Sbjct: 193  130

[Close]

BLAST of CU176306 vs. TrEMBL
Match: A0A0S3SBZ9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G164300 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.0e-18
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 1


Query: 4   SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE 63
           SST+MSIFYEGSLLGSAQV AGSQ PRSCQ+LRLPARL GL+LAHH  RF+ DVA+RE
Sbjct: 73  SSTSMSIFYEGSLLGSAQVQAGSQPPRSCQLLRLPARLHGLQLAHHAKRFLQDVARRE 130

Query: 64   123
           
Sbjct: 133  130

Query: 124  178
           
Sbjct: 193  130

[Close]

BLAST of CU176306 vs. TrEMBL
Match: A0A0L9V6C7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g136500 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.0e-18
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 1


Query: 4   SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE 63
           SST+MSIFYEGSLLGSAQV AGSQ PRSCQ+LRLPARL GL+LAHH  RF+ DVA+RE
Sbjct: 73  SSTSMSIFYEGSLLGSAQVQAGSQPPRSCQLLRLPARLHGLQLAHHAKRFLQDVARRE 130

Query: 64   123
           
Sbjct: 133  130

Query: 124  178
           
Sbjct: 193  130

[Close]

BLAST of CU176306 vs. TrEMBL
Match: M5WKP8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021034mg PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-17
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 1


Query: 4   SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE 63
           SST+MSIFY GSLLGSA+V AGSQ P+SCQ+LRLPARLDGL+LAHH + F++DVAKRE
Sbjct: 73  SSTSMSIFYNGSLLGSAEVQAGSQPPKSCQLLRLPARLDGLQLAHHAATFVADVAKRE 130

Query: 64   123
           
Sbjct: 133  130

Query: 124  178
           
Sbjct: 193  130

[Close]

BLAST of CU176306 vs. NCBI nr
Match: gi|449444795|ref|XP_004140159.1| (PREDICTED: uncharacterized protein LOC101218134 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 2.3e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 4   SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE 63
           SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE
Sbjct: 73  SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE 130

Query: 64   123
           
Sbjct: 133  130

Query: 124  178
           
Sbjct: 193  130

[Close]

BLAST of CU176306 vs. NCBI nr
Match: gi|700192825|gb|KGN48029.1| (hypothetical protein Csa_6G425170 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 2.3e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 4   SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE 63
           SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE
Sbjct: 112 SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE 169

Query: 64   123
           
Sbjct: 172  169

Query: 124  178
           
Sbjct: 232  169

[Close]

BLAST of CU176306 vs. NCBI nr
Match: gi|659097347|ref|XP_008449575.1| (PREDICTED: uncharacterized protein LOC103491417 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 2.3e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 4   SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE 63
           SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE
Sbjct: 172 SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE 229

Query: 64   123
           
Sbjct: 232  229

Query: 124  178
           
Sbjct: 292  229

[Close]

BLAST of CU176306 vs. NCBI nr
Match: gi|703074400|ref|XP_010089808.1| (hypothetical protein L484_022324 [Morus notabilis])

HSP 1 Score: 97.8 bits (242), Expect = 6.6e-18
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1


Query: 4   SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE 63
           SST MSIFY+G LLGSA V AGSQ PRSCQ+LRLPARLDGL+LAHH +RF SDVAKRE
Sbjct: 73  SSTTMSIFYQGELLGSADVQAGSQPPRSCQLLRLPARLDGLRLAHHAARFFSDVAKRE 130

Query: 64   123
           
Sbjct: 133  130

Query: 124  178
           
Sbjct: 193  130

[Close]

BLAST of CU176306 vs. NCBI nr
Match: gi|950941629|ref|XP_014493446.1| (PREDICTED: uncharacterized protein LOC106755749 [Vigna radiata var. radiata])

HSP 1 Score: 97.4 bits (241), Expect = 8.6e-18
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 1


Query: 4   SSTAMSIFYEGSLLGSAQVDAGSQQPRSCQVLRLPARLDGLKLAHHGSRFISDVAKRE 63
           SST+MSIFYEGSLLGSAQV AGSQ PRSCQ+LRLPARL GL+LAHH  RF+ DVA+RE
Sbjct: 73  SSTSMSIFYEGSLLGSAQVQAGSQPPRSCQLLRLPARLHGLQLAHHAKRFLQDVARRE 130

Query: 64   123
           
Sbjct: 133  130

Query: 124  178
           
Sbjct: 193  130

The following BLAST results are available for this feature:

BLAST of CU176306 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGW5_CUCSA	1.6e-23	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425170 PE=4 SV=1	[more]
W9QJ47_9ROSA	4.6e-18	81.03	Uncharacterized protein OS=Morus notabilis GN=L484_022324 PE=4 SV=1	[more]
A0A0S3SBZ9_PHAAN	6.0e-18	81.03	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G164300 PE=...	[more]
A0A0L9V6C7_PHAAN	6.0e-18	81.03	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g136500 PE=4 SV=1	[more]
M5WKP8_PRUPE	1.8e-17	77.59	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021034mg PE=4 SV=1	[more]

BLAST of CU176306 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444795\|ref\|XP_004140159.1\|	2.3e-23	100.00	PREDICTED: uncharacterized protein LOC101218134 [Cucumis sativus]	[more]
gi\|700192825\|gb\|KGN48029.1\|	2.3e-23	100.00	hypothetical protein Csa_6G425170 [Cucumis sativus]	[more]
gi\|659097347\|ref\|XP_008449575.1\|	2.3e-23	100.00	PREDICTED: uncharacterized protein LOC103491417 [Cucumis melo]	[more]
gi\|703074400\|ref\|XP_010089808.1\|	6.6e-18	81.03	hypothetical protein L484_022324 [Morus notabilis]	[more]
gi\|950941629\|ref\|XP_014493446.1\|	8.6e-18	81.03	PREDICTED: uncharacterized protein LOC106755749 [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G425170	Csa6G425170	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0181626	H0181626	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 2..59 score: 6.4
None	No IPR available	PANTHER	PTHR31852:SF7	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 2..59 score: 6.4