Csa6G421690 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G421690
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 19479020 .. 19479474 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAAAGATATATATATATATATAGTGATATTGATCGGTATGACCAAAATGGGAATTTCGAAAGGGCTTTCATTTGTTTGCGTCATCGCCATCTTAATTTGCAAAGTCGCCGACGCCGATGCCGACCACTTCGGGATACACGCGGTGGGGCACGCGGTGGAGCCCTTCTGCCCAGGTGGATACTCCGACAGAGGGGACCACTGCCAGCACCTCGGCCGCATCAGCTCCGTTAACTACAACGAGAATGACGACGACGATGAATTTGACGACACTTATAAAGTAGTGGGAAAACTTTCGGCGTCGCTTTCGCCTGAGGCCGCCGAAGATCGGGCGGACGGTTTAGAACTTGGTATCTTTTCACCTCATGATCGGCTTTCCGTCAAGGAAATCGTCTTGGGGCATTGATTTTTGGTTCCATTTTTTATTATAATTACTCTCCATCTCTACTTTTTTTT

mRNA sequence

ATGACCAAAATGGGAATTTCGAAAGGGCTTTCATTTGTTTGCGTCATCGCCATCTTAATTTGCAAAGTCGCCGACGCCGATGCCGACCACTTCGGGATACACGCGGTGGGGCACGCGGTGGAGCCCTTCTGCCCAGGTGGATACTCCGACAGAGGGGACCACTGCCAGCACCTCGGCCGCATCAGCTCCGTTAACTACAACGAGAATGACGACGACGATGAATTTGACGACACTTATAAAGTAGTGGGAAAACTTTCGGCGTCGCTTTCGCCTGAGGCCGCCGAAGATCGGGCGGACGGTTTAGAACTTGGTATCTTTTCACCTCATGATCGGCTTTCCGTCAAGGAAATCGTCTTGGGGCATTGA

Coding sequence (CDS)

ATGACCAAAATGGGAATTTCGAAAGGGCTTTCATTTGTTTGCGTCATCGCCATCTTAATTTGCAAAGTCGCCGACGCCGATGCCGACCACTTCGGGATACACGCGGTGGGGCACGCGGTGGAGCCCTTCTGCCCAGGTGGATACTCCGACAGAGGGGACCACTGCCAGCACCTCGGCCGCATCAGCTCCGTTAACTACAACGAGAATGACGACGACGATGAATTTGACGACACTTATAAAGTAGTGGGAAAACTTTCGGCGTCGCTTTCGCCTGAGGCCGCCGAAGATCGGGCGGACGGTTTAGAACTTGGTATCTTTTCACCTCATGATCGGCTTTCCGTCAAGGAAATCGTCTTGGGGCATTGA

Protein sequence

MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGRISSVNYNENDDDDEFDDTYKVVGKLSASLSPEAAEDRADGLELGIFSPHDRLSVKEIVLGH*

Homology

[Close]

BLAST of Csa6G421690 vs. TrEMBL
Match: A0A0A0KE60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421690 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.0e-64
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1


Query: 1   MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGR 60
           MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGR
Sbjct: 1   MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGR 60

Query: 61  ISSVNYNENDDDDEFDDTYKVVGKLSASLSPEAAEDRADGLELGIFSPHDRLSVKEIVLG 120
           ISSVNYNENDDDDEFDDTYKVVGKLSASLSPEAAEDRADGLELGIFSPHDRLSVKEIVLG
Sbjct: 61  ISSVNYNENDDDDEFDDTYKVVGKLSASLSPEAAEDRADGLELGIFSPHDRLSVKEIVLG 120

Query: 121 H 122
           H
Sbjct: 121 H 121

[Close]

BLAST of Csa6G421690 vs. NCBI nr
Match: gi|700192771|gb|KGN47975.1| (hypothetical protein Csa_6G421690 [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 4.3e-64
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1


Query: 1   MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGR 60
           MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGR
Sbjct: 1   MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGR 60

Query: 61  ISSVNYNENDDDDEFDDTYKVVGKLSASLSPEAAEDRADGLELGIFSPHDRLSVKEIVLG 120
           ISSVNYNENDDDDEFDDTYKVVGKLSASLSPEAAEDRADGLELGIFSPHDRLSVKEIVLG
Sbjct: 61  ISSVNYNENDDDDEFDDTYKVVGKLSASLSPEAAEDRADGLELGIFSPHDRLSVKEIVLG 120

Query: 121 H 122
           H
Sbjct: 121 H 121

The following BLAST results are available for this feature:

BLAST of Csa6G421690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE60_CUCSA	3.0e-64	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421690 PE=4 SV=1	[more]

BLAST of Csa6G421690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192771\|gb\|KGN47975.1\|	4.3e-64	100.00	hypothetical protein Csa_6G421690 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G421690.1	Csa6G421690.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G421690	Cla003264	Watermelon (97103) v1	cuwmB447
Csa6G421690	MELO3C014445	Melon (DHL92) v3.5.1	cumeB491
Csa6G421690	ClCG09G020860	Watermelon (Charleston Gray)	cuwcgB419
Csa6G421690	Lsi11G016630	Bottle gourd (USVL1VR-Ls)	culsiB427
Csa6G421690	MELO3C014445.2	Melon (DHL92) v3.6.1	cumedB471
Csa6G421690	Cla97C09G182270	Watermelon (97103) v2	cuwmbB510
Csa6G421690	CSPI06G22710	Wild cucumber (PI 183967)	cpicuB313
Csa6G421690	CmaCh19G010530	Cucurbita maxima (Rimu)	cmacuB519
Csa6G421690	CmoCh19G010810	Cucurbita moschata (Rifu)	cmocuB510
Csa6G421690	Cp4.1LG15g08600	Cucurbita pepo (Zucchini)	cpecuB247
Csa6G421690	Cp4.1LG04g02600	Cucurbita pepo (Zucchini)	cpecuB683

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G421690	Cucurbita pepo (Zucchini)	cpecuB751
Csa6G421690	Bottle gourd (USVL1VR-Ls)	culsiB422
Csa6G421690	Cucumber (Gy14) v2	cgybcuB281
Csa6G421690	Cucumber (Gy14) v2	cgybcuB286
Csa6G421690	Melon (DHL92) v3.6.1	cumedB417
Csa6G421690	Silver-seed gourd	carcuB0029
Csa6G421690	Silver-seed gourd	carcuB0421
Csa6G421690	Silver-seed gourd	carcuB0561
Csa6G421690	Watermelon (97103) v2	cuwmbB438
Csa6G421690	Wax gourd	cuwgoB567
Csa6G421690	Wax gourd	cuwgoB613
Csa6G421690	Cucumber (Chinese Long) v2	cucuB169
Csa6G421690	Cucumber (Gy14) v1	cgycuB282
Csa6G421690	Cucurbita maxima (Rimu)	cmacuB139
Csa6G421690	Cucurbita maxima (Rimu)	cmacuB559
Csa6G421690	Cucurbita maxima (Rimu)	cmacuB638
Csa6G421690	Cucurbita moschata (Rifu)	cmocuB125
Csa6G421690	Cucurbita moschata (Rifu)	cmocuB551
Csa6G421690	Cucurbita moschata (Rifu)	cmocuB629
Csa6G421690	Melon (DHL92) v3.5.1	cumeB436
Csa6G421690	Watermelon (Charleston Gray)	cuwcgB448
Csa6G421690	Watermelon (97103) v1	cuwmB522