CmaCh19G010530 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G010530
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr19 : 8885662 .. 8887001 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATGGGAATTTCGAAAGGGCTGTCATTTATCTTCATTTCCTTACTATTCATCAAACTCGCCCACGCCGATCCCCACCACTTCGGCATCCACGCCATCGGCCACGCCGTCGAACCATTCTGTCCGGGCGGCTACTCCGACAGAGGGGACCACTGCAACCACATCGGCCGCATCACCTCCGTGAACTACGGCGAGGATGACGACGACGACGATTTTGACGACACGTACAAAGTATTGGGCAAGCTTTCGATGGCGATGTCGGTGTCGGAGTCGACGGAGGACGCTGAAAAACAGGCGGTGGGCTTAGGGCTCGAGGACATTTCACCTGAAGAACAGTTATCCAATAAAGTCACCGTCTTGGGGCATTGATTTATTATTGTTTAAACTTCATTAATTATTTCCATAATTACCTTCGTTTTTATTTACTTCTAATGCCATGTACGATTTATTATTGCTACAAAGGTTGCAAATTTATTACCGAATTAATTGGAGTAACCTATATAAATCTTTCTTCTTTTTACATGAAAATAAAAGTCCTTATTAAATTTTTATTCTGTCCTGACTATGCTCTTAGATAGATGATTCTTTCAGCAGTTAGTACCGCATTTGGCTATCTAGCGTTTACCATAAACCCTTAATCATGATGTTTCTGTATCATTTACCCATGCCGAGAGGCGAGAGCATTGTGTTCTGCAAGAAAAATTTGAGGTTTGTGATAAAAATGGAAGCTTTGGACCAAGGAAAAGGCAAAAGAAAAACAGTCCCAAACATGGCGCAATAAAAGTAGGGAAGGCGTGCAAAGCTTTAGGGGAAAAAGACGACATTGTGTATGGCTGCAAATGAAAGAACAATCTCAGAAACCAAACCATGGAACAGAACAGAGCATAAACGAACAAAACAGAACAGCACAGAGTTGAGCTGAGCTGAACTAGTTACAAAAGAAATTGTCTGTAGATTCTGATAAAGTACTTCAAACAACAGTTGTGAGTCAAACGAATAACATTGTAACGTACCCATCATAGCAAAAAGACAACAACAAAACAATCACCTGAAATGAAAGGGAAACAGAGAGAGACAGAGAGAATAGATGAAGCTGCTGATATATTTATGACATCGTATATGATTAGTAATGAGTCAACAATATCTCACTGATCTTGCACGTACAAACCCATTATACAAACCCAAAGTTTCCCACTATTCTTTTCTTCACCCCTCAAATTCAGCAAGGCTCAGCTCAACTGACAACACAAACTTGCTTTGCAGTTTTTTTTTTTCTTTTTTTAAAAGAAAAACCTAAAAGGATGGATCTTGCAAAACTACTAAGATGGTTGATTTGA

mRNA sequence

ATGATGATGGGAATTTCGAAAGGGCTGTCATTTATCTTCATTTCCTTACTATTCATCAAACTCGCCCACGCCGATCCCCACCACTTCGGCATCCACGCCATCGGCCACGCCGTCGAACCATTCTGTCCGGGCGGCTACTCCGACAGAGGGGACCACTGCAACCACATCGGCCGCATCACCTCCGTGAACTACGGCGAGGATGACGACGACGACGATTTTGACGACACGTACAAAGTATTGGGCAAGCTTTCGATGGCGATGTCGGTGTCGGAGTCGACGGAGGACGCTGAAAAACAGGCGGTGGGCTTAGGGCTCGAGGACATTTCACCTGAAGAACAGTTATCCAATAAATTTCCCACTATTCTTTTCTTCACCCCTCAAATTCAGCAAGGCTCAGCTCAACTGACAACACAAACTTGCTTTGCAGTTTTTTTTTTTCTTTTTTTAAAAGAAAAACCTAAAAGGATGGATCTTGCAAAACTACTAAGATGGTTGATTTGA

Coding sequence (CDS)

ATGATGATGGGAATTTCGAAAGGGCTGTCATTTATCTTCATTTCCTTACTATTCATCAAACTCGCCCACGCCGATCCCCACCACTTCGGCATCCACGCCATCGGCCACGCCGTCGAACCATTCTGTCCGGGCGGCTACTCCGACAGAGGGGACCACTGCAACCACATCGGCCGCATCACCTCCGTGAACTACGGCGAGGATGACGACGACGACGATTTTGACGACACGTACAAAGTATTGGGCAAGCTTTCGATGGCGATGTCGGTGTCGGAGTCGACGGAGGACGCTGAAAAACAGGCGGTGGGCTTAGGGCTCGAGGACATTTCACCTGAAGAACAGTTATCCAATAAATTTCCCACTATTCTTTTCTTCACCCCTCAAATTCAGCAAGGCTCAGCTCAACTGACAACACAAACTTGCTTTGCAGTTTTTTTTTTTCTTTTTTTAAAAGAAAAACCTAAAAGGATGGATCTTGCAAAACTACTAAGATGGTTGATTTGA

Protein sequence

MMMGISKGLSFIFISLLFIKLAHADPHHFGIHAIGHAVEPFCPGGYSDRGDHCNHIGRITSVNYGEDDDDDDFDDTYKVLGKLSMAMSVSESTEDAEKQAVGLGLEDISPEEQLSNKFPTILFFTPQIQQGSAQLTTQTCFAVFFFLFLKEKPKRMDLAKLLRWLI
Homology
[Close]
BLAST of CmaCh19G010530 vs. TrEMBL
Match: A0A0A0KE60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421690 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.2e-33
Identity = 77/116 (66.38%), Postives = 92/116 (79.31%), Query Frame = 1 

Query: 3   MGISKGLSFI-FISLLFIKLAHADPHHFGIHAIGHAVEPFCPGGYSDRGDHCNHIGRITS 62
           MGISKGLSF+  I++L  K+A AD  HFGIHA+GHAVEPFCPGGYSDRGDHC H+GRI+S
Sbjct: 4   MGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGRISS 63

Query: 63  VNYGEDDDDDDFDDTYKVLGKLSMAMSVSESTEDAEKQAVGLGLEDISPEEQLSNK 118
           VNY E+DDDD+FDDTYKV+GKLS ++S     E AE +A GL L   SP ++LS K
Sbjct: 64  VNYNENDDDDEFDDTYKVVGKLSASLS----PEAAEDRADGLELGIFSPHDRLSVK 115

[Close]
BLAST of CmaCh19G010530 vs. NCBI nr
Match: gi|700192771|gb|KGN47975.1| (hypothetical protein Csa_6G421690 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 3.2e-33
Identity = 77/116 (66.38%), Postives = 92/116 (79.31%), Query Frame = 1 

Query: 3   MGISKGLSFI-FISLLFIKLAHADPHHFGIHAIGHAVEPFCPGGYSDRGDHCNHIGRITS 62
           MGISKGLSF+  I++L  K+A AD  HFGIHA+GHAVEPFCPGGYSDRGDHC H+GRI+S
Sbjct: 4   MGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGRISS 63

Query: 63  VNYGEDDDDDDFDDTYKVLGKLSMAMSVSESTEDAEKQAVGLGLEDISPEEQLSNK 118
           VNY E+DDDD+FDDTYKV+GKLS ++S     E AE +A GL L   SP ++LS K
Sbjct: 64  VNYNENDDDDEFDDTYKVVGKLSASLS----PEAAEDRADGLELGIFSPHDRLSVK 115

The following BLAST results are available for this feature:
BLAST of CmaCh19G010530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh19G010530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE60_CUCSA2.2e-3366.38Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421690 PE=4 SV=1[more]
BLAST of CmaCh19G010530 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh19G010530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192771|gb|KGN47975.1|3.2e-3366.38hypothetical protein Csa_6G421690 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G010530.1CmaCh19G010530.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh19G010530Csa6G421690Cucumber (Chinese Long) v2cmacuB519
CmaCh19G010530MELO3C014445Melon (DHL92) v3.5.1cmameB476
CmaCh19G010530CSPI06G22710Wild cucumber (PI 183967)cmacpiB525
CmaCh19G010530CmoCh19G010810Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G010530Lsi11G016630Bottle gourd (USVL1VR-Ls)cmalsiB474
CmaCh19G010530Cp4.1LG15g08600Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G010530Cp4.1LG04g02600Cucurbita pepo (Zucchini)cmacpeB537
CmaCh19G010530MELO3C014445.2Melon (DHL92) v3.6.1cmamedB552
CmaCh19G010530CsaV3_6G037840Cucumber (Chinese Long) v3cmacucB0628
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G010530Cucurbita pepo (Zucchini)cmacpeB527
CmaCh19G010530Cucurbita pepo (Zucchini)cmacpeB546
CmaCh19G010530Bottle gourd (USVL1VR-Ls)cmalsiB471
CmaCh19G010530Cucumber (Gy14) v2cgybcmaB780
CmaCh19G010530Cucumber (Gy14) v2cgybcmaB781
CmaCh19G010530Melon (DHL92) v3.6.1cmamedB522
CmaCh19G010530Silver-seed gourdcarcmaB0039
CmaCh19G010530Silver-seed gourdcarcmaB0471
CmaCh19G010530Silver-seed gourdcarcmaB0547
CmaCh19G010530Silver-seed gourdcarcmaB0745
CmaCh19G010530Cucumber (Chinese Long) v3cmacucB0630
CmaCh19G010530Watermelon (97103) v2cmawmbB528
CmaCh19G010530Wax gourdcmawgoB0654
CmaCh19G010530Wax gourdcmawgoB0666
CmaCh19G010530Cucurbita maxima (Rimu)cmacmaB148
CmaCh19G010530Cucurbita maxima (Rimu)cmacmaB442
CmaCh19G010530Cucurbita maxima (Rimu)cmacmaB454
CmaCh19G010530Cucumber (Gy14) v1cgycmaB0524
CmaCh19G010530Cucurbita moschata (Rifu)cmacmoB492
CmaCh19G010530Cucurbita moschata (Rifu)cmacmoB514
CmaCh19G010530Cucurbita moschata (Rifu)cmacmoB526
CmaCh19G010530Melon (DHL92) v3.5.1cmameB452
CmaCh19G010530Watermelon (Charleston Gray)cmawcgB458
CmaCh19G010530Watermelon (97103) v1cmawmB500