Cp4.1LG04g02600 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g02600
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 7742815 .. 7743168 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCATGCCAATTTCGAAAGGGCTCTCATTTCTGGGCCTTGTCGCCATCTTCATTTGCTTACTATTCATCGAAGTCGCCGACGCCCATTCCGGCCACTCCGGCACCCACGCTGTCGAGAAGCCCTGCCCCGGCGGAGGGGACCACTGTCATCACAGCGGCCGCATGGCCGCACAAACCGTAGACGAGGATGACGATTTTGATGACACGTATAAAGTTCCGGTGAAAGGTAGGATGGCAATGTCCATGTCGGAATCCACCGAGGATGCTGAAGAACGGGCGGTGGAAATGGAAATGGAGACAACTTCTCCAGAGGAACCGGTGAACCAAAAAGTGGTCGTCTTGGGGCATTGA

mRNA sequence

ATGGGCATGCCAATTTCGAAAGGGCTCTCATTTCTGGGCCTTGTCGCCATCTTCATTTGCTTACTATTCATCGAAGTCGCCGACGCCCATTCCGGCCACTCCGGCACCCACGCTGTCGAGAAGCCCTGCCCCGGCGGAGGGGACCACTGTCATCACAGCGGCCGCATGGCCGCACAAACCGTAGACGAGGATGACGATTTTGATGACACGTATAAAGTTCCGGTGAAAGGTAGGATGGCAATGTCCATGTCGGAATCCACCGAGGATGCTGAAGAACGGGCGGTGGAAATGGAAATGGAGACAACTTCTCCAGAGGAACCGGTGAACCAAAAAGTGGTCGTCTTGGGGCATTGA

Coding sequence (CDS)

ATGGGCATGCCAATTTCGAAAGGGCTCTCATTTCTGGGCCTTGTCGCCATCTTCATTTGCTTACTATTCATCGAAGTCGCCGACGCCCATTCCGGCCACTCCGGCACCCACGCTGTCGAGAAGCCCTGCCCCGGCGGAGGGGACCACTGTCATCACAGCGGCCGCATGGCCGCACAAACCGTAGACGAGGATGACGATTTTGATGACACGTATAAAGTTCCGGTGAAAGGTAGGATGGCAATGTCCATGTCGGAATCCACCGAGGATGCTGAAGAACGGGCGGTGGAAATGGAAATGGAGACAACTTCTCCAGAGGAACCGGTGAACCAAAAAGTGGTCGTCTTGGGGCATTGA

Protein sequence

MGMPISKGLSFLGLVAIFICLLFIEVADAHSGHSGTHAVEKPCPGGGDHCHHSGRMAAQTVDEDDDFDDTYKVPVKGRMAMSMSESTEDAEERAVEMEMETTSPEEPVNQKVVVLGH
Homology
[Close]
BLAST of Cp4.1LG04g02600 vs. TrEMBL
Match: A0A0A0KE60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421690 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-14
Identity = 60/126 (47.62%), Postives = 78/126 (61.90%), Query Frame = 1 

Query: 3   MPISKGLSFLGLVAIFICLLFIEVADAHSGHSGT----HAVEKPCPGG----GDHCHHSG 62
           M ISKGLSF+ ++AI IC    +VADA + H G     HAVE  CPGG    GDHC H G
Sbjct: 4   MGISKGLSFVCVIAILIC----KVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLG 63

Query: 63  RMAAQTV---DEDDDFDDTYKVPVKGRMAMSMSESTEDAEERAVEMEMETTSPEEPVNQK 118
           R+++      D+DD+FDDTYKV  K    +S S S E AE+RA  +E+   SP + ++ K
Sbjct: 64  RISSVNYNENDDDDEFDDTYKVVGK----LSASLSPEAAEDRADGLELGIFSPHDRLSVK 121

[Close]
BLAST of Cp4.1LG04g02600 vs. NCBI nr
Match: gi|700192771|gb|KGN47975.1| (hypothetical protein Csa_6G421690 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-14
Identity = 60/126 (47.62%), Postives = 78/126 (61.90%), Query Frame = 1 

Query: 3   MPISKGLSFLGLVAIFICLLFIEVADAHSGHSGT----HAVEKPCPGG----GDHCHHSG 62
           M ISKGLSF+ ++AI IC    +VADA + H G     HAVE  CPGG    GDHC H G
Sbjct: 4   MGISKGLSFVCVIAILIC----KVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLG 63

Query: 63  RMAAQTV---DEDDDFDDTYKVPVKGRMAMSMSESTEDAEERAVEMEMETTSPEEPVNQK 118
           R+++      D+DD+FDDTYKV  K    +S S S E AE+RA  +E+   SP + ++ K
Sbjct: 64  RISSVNYNENDDDDEFDDTYKVVGK----LSASLSPEAAEDRADGLELGIFSPHDRLSVK 121

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g02600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g02600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE60_CUCSA1.6e-1447.62Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421690 PE=4 SV=1[more]
BLAST of Cp4.1LG04g02600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g02600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192771|gb|KGN47975.1|2.3e-1447.62hypothetical protein Csa_6G421690 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g02600.1Cp4.1LG04g02600.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g02600CmaCh19G010530Cucurbita maxima (Rimu)cmacpeB537
Cp4.1LG04g02600CmoCh19G010810Cucurbita moschata (Rifu)cmocpeB492
Cp4.1LG04g02600Cla003264Watermelon (97103) v1cpewmB637
Cp4.1LG04g02600Csa6G421690Cucumber (Chinese Long) v2cpecuB683
Cp4.1LG04g02600MELO3C014445Melon (DHL92) v3.5.1cpemeB634
Cp4.1LG04g02600ClCG09G020860Watermelon (Charleston Gray)cpewcgB582
Cp4.1LG04g02600CSPI06G22710Wild cucumber (PI 183967)cpecpiB687
Cp4.1LG04g02600Lsi11G016630Bottle gourd (USVL1VR-Ls)cpelsiB531
Cp4.1LG04g02600CsaV3_6G037840Cucumber (Chinese Long) v3cpecucB0854
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g02600Cp4.1LG15g08600Cucurbita pepo (Zucchini)cpecpeB267
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g02600Cucurbita pepo (Zucchini)cpecpeB306
Cp4.1LG04g02600Cucurbita pepo (Zucchini)cpecpeB492
Cp4.1LG04g02600Cucumber (Gy14) v1cgycpeB0511
Cp4.1LG04g02600Cucurbita maxima (Rimu)cmacpeB148
Cp4.1LG04g02600Cucurbita maxima (Rimu)cmacpeB573
Cp4.1LG04g02600Cucurbita maxima (Rimu)cmacpeB642
Cp4.1LG04g02600Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g02600Cucurbita moschata (Rifu)cmocpeB524
Cp4.1LG04g02600Cucurbita moschata (Rifu)cmocpeB592
Cp4.1LG04g02600Cucumber (Chinese Long) v2cpecuB685
Cp4.1LG04g02600Bottle gourd (USVL1VR-Ls)cpelsiB523
Cp4.1LG04g02600Watermelon (Charleston Gray)cpewcgB592
Cp4.1LG04g02600Watermelon (97103) v1cpewmB668
Cp4.1LG04g02600Cucumber (Gy14) v2cgybcpeB838
Cp4.1LG04g02600Cucumber (Gy14) v2cgybcpeB839
Cp4.1LG04g02600Melon (DHL92) v3.6.1cpemedB758
Cp4.1LG04g02600Silver-seed gourdcarcpeB0047
Cp4.1LG04g02600Silver-seed gourdcarcpeB0474
Cp4.1LG04g02600Silver-seed gourdcarcpeB0547
Cp4.1LG04g02600Silver-seed gourdcarcpeB0754
Cp4.1LG04g02600Cucumber (Chinese Long) v3cpecucB0856
Cp4.1LG04g02600Wax gourdcpewgoB0854
Cp4.1LG04g02600Wax gourdcpewgoB0865