Cla003264 (gene) Watermelon (97103) v1

Overview
NameCla003264
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr9 : 32865193 .. 32865570 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAGTATGGGAATTTCGAAAGGGCTGTCATTTGTTTGCGTCATCGCCATGTTGATTTGCAAAGTCGCCGACGCCGATTCCGACCACTTCGGGATCCACGCGGTGGGGCACGCGGTGGAGCCGTTCTGCCCAGGTGGATACTCCGACAGAGGGGACCACTGCCAGCACATCGGCCGCATCACCTCCGTAAACTACAACGAGAATGATGACGAGGACGAATTTGACGACACGTATAAAGTAGTGGGAAAGCTTTCGATGTCGTTGTCCACGTCGGAGTCCACGGAGGCCGCCGAAGAACGGGCGGTGGGTTTAGAACTTGAGACCATTTCACCTGAAGAACAGGCTTCCGGTAGAGCCATCGTCTTGGGGCATTGA

mRNA sequence

ATGGACAGTATGGGAATTTCGAAAGGGCTGTCATTTGTTTGCGTCATCGCCATGTTGATTTGCAAAGTCGCCGACGCCGATTCCGACCACTTCGGGATCCACGCGGTGGGGCACGCGGTGGAGCCGTTCTGCCCAGGTGGATACTCCGACAGAGGGGACCACTGCCAGCACATCGGCCGCATCACCTCCGTAAACTACAACGAGAATGATGACGAGGACGAATTTGACGACACGTATAAAGTAGTGGGAAAGCTTTCGATGTCGTTGTCCACGTCGGAGTCCACGGAGGCCGCCGAAGAACGGGCGGTGGGTTTAGAACTTGAGACCATTTCACCTGAAGAACAGGCTTCCGGTAGAGCCATCGTCTTGGGGCATTGA

Coding sequence (CDS)

ATGGACAGTATGGGAATTTCGAAAGGGCTGTCATTTGTTTGCGTCATCGCCATGTTGATTTGCAAAGTCGCCGACGCCGATTCCGACCACTTCGGGATCCACGCGGTGGGGCACGCGGTGGAGCCGTTCTGCCCAGGTGGATACTCCGACAGAGGGGACCACTGCCAGCACATCGGCCGCATCACCTCCGTAAACTACAACGAGAATGATGACGAGGACGAATTTGACGACACGTATAAAGTAGTGGGAAAGCTTTCGATGTCGTTGTCCACGTCGGAGTCCACGGAGGCCGCCGAAGAACGGGCGGTGGGTTTAGAACTTGAGACCATTTCACCTGAAGAACAGGCTTCCGGTAGAGCCATCGTCTTGGGGCATTGA

Protein sequence

MDSMGISKGLSFVCVIAMLICKVADADSDHFGIHAVGHAVEPFCPGGYSDRGDHCQHIGRITSVNYNENDDEDEFDDTYKVVGKLSMSLSTSESTEAAEERAVGLELETISPEEQASGRAIVLGH
Homology
[Close]
BLAST of Cla003264 vs. TrEMBL
Match: A0A0A0KE60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421690 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.7e-50
Identity = 100/125 (80.00%), Postives = 109/125 (87.20%), Query Frame = 1 

Query: 1   MDSMGISKGLSFVCVIAMLICKVADADSDHFGIHAVGHAVEPFCPGGYSDRGDHCQHIGR 60
           M  MGISKGLSFVCVIA+LICKVADAD+DHFGIHAVGHAVEPFCPGGYSDRGDHCQH+GR
Sbjct: 1   MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGR 60

Query: 61  ITSVNYNENDDEDEFDDTYKVVGKLSMSLSTSESTEAAEERAVGLELETISPEEQASGRA 120
           I+SVNYNENDD+DEFDDTYKVVGKLS SL    S EAAE+RA GLEL   SP ++ S + 
Sbjct: 61  ISSVNYNENDDDDEFDDTYKVVGKLSASL----SPEAAEDRADGLELGIFSPHDRLSVKE 120

Query: 121 IVLGH 126
           IVLGH
Sbjct: 121 IVLGH 121

[Close]
BLAST of Cla003264 vs. NCBI nr
Match: gi|700192771|gb|KGN47975.1| (hypothetical protein Csa_6G421690 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 8.1e-50
Identity = 100/125 (80.00%), Postives = 109/125 (87.20%), Query Frame = 1 

Query: 1   MDSMGISKGLSFVCVIAMLICKVADADSDHFGIHAVGHAVEPFCPGGYSDRGDHCQHIGR 60
           M  MGISKGLSFVCVIA+LICKVADAD+DHFGIHAVGHAVEPFCPGGYSDRGDHCQH+GR
Sbjct: 1   MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGR 60

Query: 61  ITSVNYNENDDEDEFDDTYKVVGKLSMSLSTSESTEAAEERAVGLELETISPEEQASGRA 120
           I+SVNYNENDD+DEFDDTYKVVGKLS SL    S EAAE+RA GLEL   SP ++ S + 
Sbjct: 61  ISSVNYNENDDDDEFDDTYKVVGKLSASL----SPEAAEDRADGLELGIFSPHDRLSVKE 120

Query: 121 IVLGH 126
           IVLGH
Sbjct: 121 IVLGH 121

The following BLAST results are available for this feature:
BLAST of Cla003264 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE60_CUCSA5.7e-5080.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421690 PE=4 SV=1[more]
BLAST of Cla003264 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192771|gb|KGN47975.1|8.1e-5080.00hypothetical protein Csa_6G421690 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003264Cla003264.1mRNA