Cla97C09G182270 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C09G182270
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr09 : 35601838 .. 35602215 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGTATGGGAATTTCGAAAGGGCTGTCATTTGTTTGCGTCATCGCCATGTTGATTTGCAAAGTCGCCGACGCCGATTCCGACCACTTCGGGATCCACGCGGTGGGGCACGCGGTGGAGCCGTTCTGCCCAGGTGGATACTCCGACAGAGGGGACCACTGCCAGCACATCGGCCGCATCACCTCCGTAAACTACAACGAGAATGATGACGAGGACGAATTTGACGACACGTATAAAGTAGTGGGAAAGCTTTCGATGTCGTTGTCCACGTCGGAGTCCACGGAGGCCGCCGAAGAACGGGCGGTGGGTTTAGAACTTGAGACCATTTCACCTGAAGAACAGGCTTCCGGTAGAGCCATCGTCTTGGGGCATTGA

mRNA sequence

ATGGACAGTATGGGAATTTCGAAAGGGCTGTCATTTGTTTGCGTCATCGCCATGTTGATTTGCAAAGTCGCCGACGCCGATTCCGACCACTTCGGGATCCACGCGGTGGGGCACGCGGTGGAGCCGTTCTGCCCAGGTGGATACTCCGACAGAGGGGACCACTGCCAGCACATCGGCCGCATCACCTCCGTAAACTACAACGAGAATGATGACGAGGACGAATTTGACGACACGTATAAAGTAGTGGGAAAGCTTTCGATGTCGTTGTCCACGTCGGAGTCCACGGAGGCCGCCGAAGAACGGGCGGTGGGTTTAGAACTTGAGACCATTTCACCTGAAGAACAGGCTTCCGGTAGAGCCATCGTCTTGGGGCATTGA

Coding sequence (CDS)

ATGGACAGTATGGGAATTTCGAAAGGGCTGTCATTTGTTTGCGTCATCGCCATGTTGATTTGCAAAGTCGCCGACGCCGATTCCGACCACTTCGGGATCCACGCGGTGGGGCACGCGGTGGAGCCGTTCTGCCCAGGTGGATACTCCGACAGAGGGGACCACTGCCAGCACATCGGCCGCATCACCTCCGTAAACTACAACGAGAATGATGACGAGGACGAATTTGACGACACGTATAAAGTAGTGGGAAAGCTTTCGATGTCGTTGTCCACGTCGGAGTCCACGGAGGCCGCCGAAGAACGGGCGGTGGGTTTAGAACTTGAGACCATTTCACCTGAAGAACAGGCTTCCGGTAGAGCCATCGTCTTGGGGCATTGA

Protein sequence

MDSMGISKGLSFVCVIAMLICKVADADSDHFGIHAVGHAVEPFCPGGYSDRGDHCQHIGRITSVNYNENDDEDEFDDTYKVVGKLSMSLSTSESTEAAEERAVGLELETISPEEQASGRAIVLGH

Homology

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BLAST of Cla97C09G182270 vs. NCBI nr
Match: KGN47975.1 (hypothetical protein Csa_6G421690 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 1.7e-35
Identity = 82/125 (65.60%), Postives = 90/125 (72.00%), Query Frame = 0


Query: 1   MDSMGISKGLSFVCVIAMLICKVADADSDHFGIHAVGHAVEPFCPGGYSDRGDHCQHIGR 60
           M  MGISKGLSFVCVIA+LICKVADAD+DHFGIHAVGHAVEPFCPGGYSDRGDHCQH+GR
Sbjct: 1   MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGR 60

Query: 61  ITSVNYNENDXXXXXXXXXXXXXXXXXXXXXXXXXXAAEERAVGLELETISPEEQASGRA 120
           I+SVNYNEND      X                   AAE+RA GLEL   SP ++ S + 
Sbjct: 61  ISSVNYNEND----DDXEFDDTYKVVGKLSASLSPEAAEDRADGLELGIFSPHDRLSVKE 120

Query: 121 IVLGH 126
           IVLGH
Sbjct: 121 IVLGH 121

[Close]

BLAST of Cla97C09G182270 vs. TrEMBL
Match: tr|A0A0A0KE60|A0A0A0KE60_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421690 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-35
Identity = 82/125 (65.60%), Postives = 90/125 (72.00%), Query Frame = 0


Query: 1   MDSMGISKGLSFVCVIAMLICKVADADSDHFGIHAVGHAVEPFCPGGYSDRGDHCQHIGR 60
           M  MGISKGLSFVCVIA+LICKVADAD+DHFGIHAVGHAVEPFCPGGYSDRGDHCQH+GR
Sbjct: 1   MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGR 60

Query: 61  ITSVNYNENDXXXXXXXXXXXXXXXXXXXXXXXXXXAAEERAVGLELETISPEEQASGRA 120
           I+SVNYNEND      X                   AAE+RA GLEL   SP ++ S + 
Sbjct: 61  ISSVNYNEND----DDXEFDDTYKVVGKLSASLSPEAAEDRADGLELGIFSPHDRLSVKE 120

Query: 121 IVLGH 126
           IVLGH
Sbjct: 121 IVLGH 121

The following BLAST results are available for this feature:

BLAST of Cla97C09G182270 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47975.1	1.7e-35	65.60	hypothetical protein Csa_6G421690 [Cucumis sativus]	[more]

BLAST of Cla97C09G182270 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KE60\|A0A0A0KE60_CUCSA	1.1e-35	65.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421690 PE=4 SV=1	[more]

BLAST of Cla97C09G182270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C09G182270 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G182270.1	Cla97C09G182270.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C09G182270	Cla003264	Watermelon (97103) v1	wmwmbB042
Cla97C09G182270	Csa6G421690	Cucumber (Chinese Long) v2	cuwmbB510
Cla97C09G182270	MELO3C014445	Melon (DHL92) v3.5.1	mewmbB410
Cla97C09G182270	ClCG09G020860	Watermelon (Charleston Gray)	wcgwmbB035
Cla97C09G182270	CSPI06G22710	Wild cucumber (PI 183967)	cpiwmbB536
Cla97C09G182270	Lsi11G016630	Bottle gourd (USVL1VR-Ls)	lsiwmbB107
Cla97C09G182270	MELO3C014445.2	Melon (DHL92) v3.6.1	medwmbB397
Cla97C09G182270	CsaV3_6G037840	Cucumber (Chinese Long) v3	cucwmbB530

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C09G182270	Silver-seed gourd	carwmbB0419
Cla97C09G182270	Cucumber (Gy14) v2	cgybwmbB487
Cla97C09G182270	Cucurbita maxima (Rimu)	cmawmbB158
Cla97C09G182270	Cucurbita moschata (Rifu)	cmowmbB140
Cla97C09G182270	Wax gourd	wgowmbB268