Csa6G421690.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G421690.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 19479020 .. 19479474 (+)
Sequence length366
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAAAGATATATATATATATATAGTGATATTGATCGGTATGACCAAAATGGGAATTTCGAAAGGGCTTTCATTTGTTTGCGTCATCGCCATCTTAATTTGCAAAGTCGCCGACGCCGATGCCGACCACTTCGGGATACACGCGGTGGGGCACGCGGTGGAGCCCTTCTGCCCAGGTGGATACTCCGACAGAGGGGACCACTGCCAGCACCTCGGCCGCATCAGCTCCGTTAACTACAACGAGAATGACGACGACGATGAATTTGACGACACTTATAAAGTAGTGGGAAAACTTTCGGCGTCGCTTTCGCCTGAGGCCGCCGAAGATCGGGCGGACGGTTTAGAACTTGGTATCTTTTCACCTCATGATCGGCTTTCCGTCAAGGAAATCGTCTTGGGGCATTGATTTTTGGTTCCATTTTTTATTATAATTACTCTCCATCTCTACTTTTTTTT

mRNA sequence

ATGACCAAAATGGGAATTTCGAAAGGGCTTTCATTTGTTTGCGTCATCGCCATCTTAATTTGCAAAGTCGCCGACGCCGATGCCGACCACTTCGGGATACACGCGGTGGGGCACGCGGTGGAGCCCTTCTGCCCAGGTGGATACTCCGACAGAGGGGACCACTGCCAGCACCTCGGCCGCATCAGCTCCGTTAACTACAACGAGAATGACGACGACGATGAATTTGACGACACTTATAAAGTAGTGGGAAAACTTTCGGCGTCGCTTTCGCCTGAGGCCGCCGAAGATCGGGCGGACGGTTTAGAACTTGGTATCTTTTCACCTCATGATCGGCTTTCCGTCAAGGAAATCGTCTTGGGGCATTGA

Coding sequence (CDS)

ATGACCAAAATGGGAATTTCGAAAGGGCTTTCATTTGTTTGCGTCATCGCCATCTTAATTTGCAAAGTCGCCGACGCCGATGCCGACCACTTCGGGATACACGCGGTGGGGCACGCGGTGGAGCCCTTCTGCCCAGGTGGATACTCCGACAGAGGGGACCACTGCCAGCACCTCGGCCGCATCAGCTCCGTTAACTACAACGAGAATGACGACGACGATGAATTTGACGACACTTATAAAGTAGTGGGAAAACTTTCGGCGTCGCTTTCGCCTGAGGCCGCCGAAGATCGGGCGGACGGTTTAGAACTTGGTATCTTTTCACCTCATGATCGGCTTTCCGTCAAGGAAATCGTCTTGGGGCATTGA

Protein sequence

MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGRISSVNYNENDDDDEFDDTYKVVGKLSASLSPEAAEDRADGLELGIFSPHDRLSVKEIVLGH*
Homology
[Close]
BLAST of Csa6G421690.1 vs. TrEMBL
Match: A0A0A0KE60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421690 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.0e-64
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 

Query: 1   MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGR 60
           MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGR
Sbjct: 1   MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGR 60

Query: 61  ISSVNYNENDDDDEFDDTYKVVGKLSASLSPEAAEDRADGLELGIFSPHDRLSVKEIVLG 120
           ISSVNYNENDDDDEFDDTYKVVGKLSASLSPEAAEDRADGLELGIFSPHDRLSVKEIVLG
Sbjct: 61  ISSVNYNENDDDDEFDDTYKVVGKLSASLSPEAAEDRADGLELGIFSPHDRLSVKEIVLG 120

Query: 121 H 122
           H
Sbjct: 121 H 121

[Close]
BLAST of Csa6G421690.1 vs. NCBI nr
Match: gi|700192771|gb|KGN47975.1| (hypothetical protein Csa_6G421690 [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 4.3e-64
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 

Query: 1   MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGR 60
           MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGR
Sbjct: 1   MTKMGISKGLSFVCVIAILICKVADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGR 60

Query: 61  ISSVNYNENDDDDEFDDTYKVVGKLSASLSPEAAEDRADGLELGIFSPHDRLSVKEIVLG 120
           ISSVNYNENDDDDEFDDTYKVVGKLSASLSPEAAEDRADGLELGIFSPHDRLSVKEIVLG
Sbjct: 61  ISSVNYNENDDDDEFDDTYKVVGKLSASLSPEAAEDRADGLELGIFSPHDRLSVKEIVLG 120

Query: 121 H 122
           H
Sbjct: 121 H 121

The following BLAST results are available for this feature:
BLAST of Csa6G421690.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE60_CUCSA3.0e-64100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421690 PE=4 SV=1[more]
BLAST of Csa6G421690.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192771|gb|KGN47975.1|4.3e-64100.00hypothetical protein Csa_6G421690 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G421690Csa6G421690gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G421690.1Csa6G421690.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G421690.1.utr5p1Csa6G421690.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G421690.1.cds1Csa6G421690.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G421690.1.utr3p1Csa6G421690.1.utr3p1three_prime_UTR