Csa6G401350 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G401350
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRing finger protein, putative; contains IPR013083 (Zinc finger, RING/FYVE/PHD-type)
LocationChr6 : 17885822 .. 17886313 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCGCCCACCCTCCTTCCTCCCCCGCCACCGGTCTCGGTCTCGGCTACGGCATTGCCATTGCCGTCAGCATCCTCGTCTTCATCTCCACCGTCATGCTCATCTCCTACGCCTGCATTCGCGTTAAATCTGCCACTACTCGTCCCTCCGCTTCCCTTCCCTCTCCCCCAACCCCCGTCGACAATGTCGTGGTTCTCATGGTTGGATTACACGGCTCCATCATCGAATCCTACCCTAAATTGGTCCTCGGAGAGAGTCGTCGTCTTCCTCCCCCTAACAATGGCCCTTGCTCCATTTGCCTCTCTGATTACAAGCCCCACGATTCCGTTCGATGCATCCCCGATTGTCGACATTGTTTTCACTCTGATTGCGTCGATCAATGGCTTCGTATGAGTGCTACTTGTCCTTTGTGTCGAAATTCCCCAGCTCCAACCCCTCTTGCTACTCCTCTCTCTGAACTTGTGCCTCTGGCTTCCCATGCTAGGTGA

mRNA sequence

ATGTCCTCCGCCCACCCTCCTTCCTCCCCCGCCACCGGTCTCGGTCTCGGCTACGGCATTGCCATTGCCGTCAGCATCCTCGTCTTCATCTCCACCGTCATGCTCATCTCCTACGCCTGCATTCGCGTTAAATCTGCCACTACTCGTCCCTCCGCTTCCCTTCCCTCTCCCCCAACCCCCGTCGACAATGTCGTGGTTCTCATGGTTGGATTACACGGCTCCATCATCGAATCCTACCCTAAATTGGTCCTCGGAGAGAGTCGTCGTCTTCCTCCCCCTAACAATGGCCCTTGCTCCATTTGCCTCTCTGATTACAAGCCCCACGATTCCGTTCGATGCATCCCCGATTGTCGACATTGTTTTCACTCTGATTGCGTCGATCAATGGCTTCGTATGAGTGCTACTTGTCCTTTGTGTCGAAATTCCCCAGCTCCAACCCCTCTTGCTACTCCTCTCTCTGAACTTGTGCCTCTGGCTTCCCATGCTAGGTGA

Coding sequence (CDS)

ATGTCCTCCGCCCACCCTCCTTCCTCCCCCGCCACCGGTCTCGGTCTCGGCTACGGCATTGCCATTGCCGTCAGCATCCTCGTCTTCATCTCCACCGTCATGCTCATCTCCTACGCCTGCATTCGCGTTAAATCTGCCACTACTCGTCCCTCCGCTTCCCTTCCCTCTCCCCCAACCCCCGTCGACAATGTCGTGGTTCTCATGGTTGGATTACACGGCTCCATCATCGAATCCTACCCTAAATTGGTCCTCGGAGAGAGTCGTCGTCTTCCTCCCCCTAACAATGGCCCTTGCTCCATTTGCCTCTCTGATTACAAGCCCCACGATTCCGTTCGATGCATCCCCGATTGTCGACATTGTTTTCACTCTGATTGCGTCGATCAATGGCTTCGTATGAGTGCTACTTGTCCTTTGTGTCGAAATTCCCCAGCTCCAACCCCTCTTGCTACTCCTCTCTCTGAACTTGTGCCTCTGGCTTCCCATGCTAGGTGA

Protein sequence

MSSAHPPSSPATGLGLGYGIAIAVSILVFISTVMLISYACIRVKSATTRPSASLPSPPTPVDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHCFHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR*
Homology
[Close]
BLAST of Csa6G401350 vs. Swiss-Prot
Match: ATL69_ARATH (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana GN=ATL69 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.5e-54
Identity = 106/163 (65.03%), Postives = 120/163 (73.62%), Query Frame = 1 

Query: 6   PPSSPATGLGLGYGIAIAVSILVFISTVMLISYACIRVKS-----ATTRPSASLPSPPTP 65
           P S PA+G+GLGYGIAIAVSILV IS +ML SY CIR KS     AT+     LPSP   
Sbjct: 3   PISPPASGVGLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAE 62

Query: 66  VDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHC 125
           V       +GL   +IESYP++VLG+SRRLP PNNGPCSICL DY+  + VRCIP+C HC
Sbjct: 63  VK------LGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHC 122

Query: 126 FHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 164
           FH+DCVD+WLR SATCPLCRNSPAP+ LATPLS+LVPLA   R
Sbjct: 123 FHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

[Close]
BLAST of Csa6G401350 vs. Swiss-Prot
Match: ATL70_ARATH (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.9e-29
Identity = 61/149 (40.94%), Postives = 91/149 (61.07%), Query Frame = 1 

Query: 15  GLGYGIAIAVSILVFISTVMLISYACIRVKSATTRPSASLPSPPTPVDN---VVVLMVGL 74
           G  YGI +++ +L+ I+T+ L SY C R + +++    +  S      +   ++ ++ GL
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIIDVVPGL 122

Query: 75  HGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHCFHSDCVDQWLR 134
               I+SYPK++  E++   P     C+ICL DYK    +R +PDC H FH  C+D WLR
Sbjct: 123 DEDTIQSYPKILYSEAKG--PTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLR 182

Query: 135 MSATCPLCRNSPAPTPLATPLSELVPLAS 161
           ++ TCP+CR SP PTPL+TPL+E+VPLAS
Sbjct: 183 LNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]
BLAST of Csa6G401350 vs. Swiss-Prot
Match: ATL71_ARATH (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana GN=ATL71 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.7e-28
Identity = 67/169 (39.64%), Postives = 92/169 (54.44%), Query Frame = 1 

Query: 15  GLGYGIAIAVSILVFISTVMLISYACIRVK---SATTRP---------SASLPS------ 74
           GL YGI +++ IL+ I+T+ L SY C R     S TT P         + +LP       
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFD 81

Query: 75  -PPTPVDNVVVLMVGLHGSIIESYPKLVLGESR-----RLPPPNNGPCSICLSDYKPHDS 134
                 D VVV ++GL   +I+ +PKL   E+R     +        CSICL+DYK  D 
Sbjct: 82  FEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDM 141

Query: 135 VRCIPDCRHCFHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLA 160
           +R +PDC H FH +CVD WLR+  TCP+CR SP P+P  TP++++VP +
Sbjct: 142 IRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]
BLAST of Csa6G401350 vs. Swiss-Prot
Match: ATL68_ARATH (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.7e-27
Identity = 73/193 (37.82%), Postives = 99/193 (51.30%), Query Frame = 1 

Query: 6   PPSSPA----TGLGLGYGIAIAVSILVFISTVMLISYACIRVK-------SATTRPSASL 65
           PP  P     T LGLGY IAIA+  LV IST++L SY C R         +A    +AS 
Sbjct: 12  PPPVPIPTYITSLGLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASF 71

Query: 66  PSPPTPVDNVV------------VLMVGLHGSIIESYPK---------LVLGESRRLPPP 125
                 V  ++            V++ GL  S+I SYPK         +V G+       
Sbjct: 72  SDRGVIVPRIIFVAEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEG 131

Query: 126 NNGPCSICLSDYKPHDSVRCIPDCRHCFHSDCVDQWLRMSATCPLCRNSPAP----TPLA 163
               CSICL +Y   + +R +P+C+H FH  C+D WL+++ +CP+CRNSP P    TP +
Sbjct: 132 RETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQS 191

[Close]
BLAST of Csa6G401350 vs. Swiss-Prot
Match: ATL67_ARATH (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.4e-27
Identity = 73/189 (38.62%), Postives = 98/189 (51.85%), Query Frame = 1 

Query: 6   PPSSPATG-------LGLGYGIAIAVSILVFISTVMLISYACIRVKSATTRPSASLPSPP 65
           PPS P  G       LG GY IAIA+  LV +STV+L SY C R     T    S     
Sbjct: 18  PPSPPQAGNHSYLTTLGFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRG 77

Query: 66  TPV-----------DNVVV----LMVGLHGSIIESYPKLVLGESRRLPPPN------NGP 125
             V           DN  +    ++VGL  ++I SYPK    +       +      +  
Sbjct: 78  GSVILPRIIFVAEEDNEDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTT 137

Query: 126 CSICLSDYKPHDSVRCIPDCRHCFHSDCVDQWLRMSATCPLCRNSPAP----TPLATPLS 163
           CSICL +YK  + +R +P+C+H FH  C+D WL+++ +CP+CRNSP P    TPL+TPLS
Sbjct: 138 CSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLS 197

[Close]
BLAST of Csa6G401350 vs. TrEMBL
Match: A0A0A0KFY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401350 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 1.5e-90
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 

Query: 1   MSSAHPPSSPATGLGLGYGIAIAVSILVFISTVMLISYACIRVKSATTRPSASLPSPPTP 60
           MSSAHPPSSPATGLGLGYGIAIAVSILVFISTVMLISYACIRVKSATTRPSASLPSPPTP
Sbjct: 1   MSSAHPPSSPATGLGLGYGIAIAVSILVFISTVMLISYACIRVKSATTRPSASLPSPPTP 60

Query: 61  VDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHC 120
           VDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHC
Sbjct: 61  VDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHC 120

Query: 121 FHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 164
           FHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR
Sbjct: 121 FHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 163

[Close]
BLAST of Csa6G401350 vs. TrEMBL
Match: D7TX41_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0084g00140 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.6e-55
Identity = 115/175 (65.71%), Postives = 136/175 (77.71%), Query Frame = 1 

Query: 1   MSSAHPPSSPATGLGLGYGIAIAVSILVFISTVMLISYACIRVK-SATTRPSASLPSP-- 60
           MS+A PP S A G+GLGYGIAIAVSILV IST+ML SYAC+RVK S  TR     P    
Sbjct: 1   MSTATPPES-AAGVGLGYGIAIAVSILVLISTIMLASYACVRVKASGGTRADHGRPGTNR 60

Query: 61  -PTPVD----NVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVR 120
             T VD      VV++ GL G  IESYPK+VLG+SRRLP PN+GPCSICLS+Y+P+++VR
Sbjct: 61  ESTAVDLSELAAVVVVAGLDGPAIESYPKMVLGQSRRLPRPNDGPCSICLSEYRPNETVR 120

Query: 121 CIPDCRHCFHSDCVDQWLRMSATCPLCRNSP----APTPLATPLSELVPLASHAR 164
            IP+C HCFH+DC+D+WLRMSATCP+CR+SP    APTPLATPLSE+VPLA HAR
Sbjct: 121 SIPECNHCFHADCIDEWLRMSATCPICRSSPAVSAAPTPLATPLSEVVPLAFHAR 174

[Close]
BLAST of Csa6G401350 vs. TrEMBL
Match: A0A072UT50_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_3g012550 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.2e-54
Identity = 108/177 (61.02%), Postives = 134/177 (75.71%), Query Frame = 1 

Query: 1   MSSAHPPSSPA---TGLGLGYGIAIAVSILVFISTVMLISYACIRVKSATTRPSASLP-- 60
           MS+A PPSS     TG+GLGYGI IAVSILV IST+ML+SY C+R+KS   R S  L   
Sbjct: 1   MSTAEPPSSTTITTTGVGLGYGITIAVSILVLISTIMLVSYLCVRIKSHGRRDSFHLDIH 60

Query: 61  -SPPTPVDNVVV----LMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDS 120
             P T +++ +      ++GL   +IESYPK++LGESRRLP PN G C+ICL+DY P ++
Sbjct: 61  HQPHTTINSGLAQPGPFIMGLEKPMIESYPKMILGESRRLPKPNGGQCAICLTDYLPKET 120

Query: 121 VRCIPDCRHCFHSDCVDQWLRMSATCPLCRNSPAP----TPLATPLSELVPLASHAR 164
           +RC+PDC+HCFH+DCVD+WL+MSATCPLCRNSPAP    TP+ATPLSEL PLA HAR
Sbjct: 121 IRCVPDCQHCFHADCVDEWLKMSATCPLCRNSPAPSPITTPVATPLSELAPLAFHAR 177

[Close]
BLAST of Csa6G401350 vs. TrEMBL
Match: A0A067L8Z0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24568 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.9e-54
Identity = 111/174 (63.79%), Postives = 130/174 (74.71%), Query Frame = 1 

Query: 1   MSSAHPPSSPATGLGLGYGIAIAVSILVFISTVMLISYACIRVKSATTRPSASLPSPPTP 60
           MS+A PP S ATG+GLGYGIAIAVSILV IST+ML SYAC+RVK +    S +  +    
Sbjct: 1   MSTADPPVS-ATGVGLGYGIAIAVSILVLISTIMLASYACVRVKGSLRDRSNNGDNDDDT 60

Query: 61  ---------VDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSV 120
                    +    +L++GL G  IESYPK+VLGESRRLP PNNGPCSICLSDYKP D++
Sbjct: 61  DPYRHNRQFMTGEPMLVIGLDGPQIESYPKMVLGESRRLPKPNNGPCSICLSDYKPKDTL 120

Query: 121 RCIPDCRHCFHSDCVDQWLRMSATCPLCRNSPAP----TPLATPLSELVPLASH 162
           RCIP C HCFH+DCVD+WL+MSATCPLCRNSP P    TP+ATPLSEL PL+ H
Sbjct: 121 RCIPACHHCFHADCVDEWLKMSATCPLCRNSPTPSAVSTPIATPLSELAPLSFH 173

[Close]
BLAST of Csa6G401350 vs. TrEMBL
Match: A0A078EDX7_BRANA (BnaC09g48210D protein OS=Brassica napus GN=BnaC09g48210D PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.2e-53
Identity = 104/158 (65.82%), Postives = 122/158 (77.22%), Query Frame = 1 

Query: 6   PPSSPATGLGLGYGIAIAVSILVFISTVMLISYACIRVKSATTRPSASLPSPPTPVDNVV 65
           P + PATG+GLGYGIAIAVSIL+ IST+ML SY CIR+KSA    + S     +P   V 
Sbjct: 3   PTNPPATGVGLGYGIAIAVSILILISTIMLASYICIRLKSAPRDGATSEGVLDSPAAEV- 62

Query: 66  VLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHCFHSDC 125
              +GL   +IESYP++VLGESRRLP PNNGPCSICL DY+  D VRCIP+C HCFH+DC
Sbjct: 63  --KLGLDRPVIESYPRIVLGESRRLPRPNNGPCSICLCDYEARDPVRCIPECNHCFHADC 122

Query: 126 VDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 164
           VD+WLR SATCPLCRNSPAP+ LATPLS+LVP+A   R
Sbjct: 123 VDEWLRTSATCPLCRNSPAPSRLATPLSDLVPVAFQIR 157

[Close]
BLAST of Csa6G401350 vs. TAIR10
Match: AT5G07040.1 (AT5G07040.1 RING/U-box superfamily protein)

HSP 1 Score: 211.8 bits (538), Expect = 3.1e-55
Identity = 106/163 (65.03%), Postives = 120/163 (73.62%), Query Frame = 1 

Query: 6   PPSSPATGLGLGYGIAIAVSILVFISTVMLISYACIRVKS-----ATTRPSASLPSPPTP 65
           P S PA+G+GLGYGIAIAVSILV IS +ML SY CIR KS     AT+     LPSP   
Sbjct: 3   PISPPASGVGLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAE 62

Query: 66  VDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHC 125
           V       +GL   +IESYP++VLG+SRRLP PNNGPCSICL DY+  + VRCIP+C HC
Sbjct: 63  VK------LGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHC 122

Query: 126 FHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 164
           FH+DCVD+WLR SATCPLCRNSPAP+ LATPLS+LVPLA   R
Sbjct: 123 FHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

[Close]
BLAST of Csa6G401350 vs. TAIR10
Match: AT2G35910.1 (AT2G35910.1 RING/U-box superfamily protein)

HSP 1 Score: 128.3 bits (321), Expect = 4.5e-30
Identity = 61/149 (40.94%), Postives = 91/149 (61.07%), Query Frame = 1 

Query: 15  GLGYGIAIAVSILVFISTVMLISYACIRVKSATTRPSASLPSPPTPVDN---VVVLMVGL 74
           G  YGI +++ +L+ I+T+ L SY C R + +++    +  S      +   ++ ++ GL
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIIDVVPGL 122

Query: 75  HGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHCFHSDCVDQWLR 134
               I+SYPK++  E++   P     C+ICL DYK    +R +PDC H FH  C+D WLR
Sbjct: 123 DEDTIQSYPKILYSEAKG--PTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLR 182

Query: 135 MSATCPLCRNSPAPTPLATPLSELVPLAS 161
           ++ TCP+CR SP PTPL+TPL+E+VPLAS
Sbjct: 183 LNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209

[Close]
BLAST of Csa6G401350 vs. TAIR10
Match: AT5G53110.1 (AT5G53110.1 RING/U-box superfamily protein)

HSP 1 Score: 125.2 bits (313), Expect = 3.8e-29
Identity = 57/143 (39.86%), Postives = 87/143 (60.84%), Query Frame = 1 

Query: 2   SSAHPPSSPATG-LGLGYGIAIAVSILVFISTVMLISYACIRVKSATTRPSASLPSPPTP 61
           S  H P+ P      +  G  I  +++VF     + S     +K     P+  + +    
Sbjct: 233 SHVHKPAIPRRARYAIAVGAGIPGALIVFGLFCFVYSKISSCIKRRRLVPTPEINNAQAH 292

Query: 62  VDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHC 121
             +  V+++GL G  IESYPK+VLGES+RLP  ++  C+ICLS+Y+P +++R IP C+HC
Sbjct: 293 YLHSSVIVMGLDGPTIESYPKIVLGESKRLPKVDDATCAICLSEYEPKETLRTIPQCQHC 352

Query: 122 FHSDCVDQWLRMSATCPLCRNSP 144
           FH+DC+D+WL+++ TCP+CRNSP
Sbjct: 353 FHADCIDEWLKLNGTCPVCRNSP 375

[Close]
BLAST of Csa6G401350 vs. TAIR10
Match: AT5G06490.1 (AT5G06490.1 RING/U-box superfamily protein)

HSP 1 Score: 125.2 bits (313), Expect = 3.8e-29
Identity = 67/169 (39.64%), Postives = 92/169 (54.44%), Query Frame = 1 

Query: 15  GLGYGIAIAVSILVFISTVMLISYACIRVK---SATTRP---------SASLPS------ 74
           GL YGI +++ IL+ I+T+ L SY C R     S TT P         + +LP       
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFD 81

Query: 75  -PPTPVDNVVVLMVGLHGSIIESYPKLVLGESR-----RLPPPNNGPCSICLSDYKPHDS 134
                 D VVV ++GL   +I+ +PKL   E+R     +        CSICL+DYK  D 
Sbjct: 82  FEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDM 141

Query: 135 VRCIPDCRHCFHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLA 160
           +R +PDC H FH +CVD WLR+  TCP+CR SP P+P  TP++++VP +
Sbjct: 142 IRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]
BLAST of Csa6G401350 vs. TAIR10
Match: AT3G61550.1 (AT3G61550.1 RING/U-box superfamily protein)

HSP 1 Score: 122.1 bits (305), Expect = 3.2e-28
Identity = 73/193 (37.82%), Postives = 99/193 (51.30%), Query Frame = 1 

Query: 6   PPSSPA----TGLGLGYGIAIAVSILVFISTVMLISYACIRVK-------SATTRPSASL 65
           PP  P     T LGLGY IAIA+  LV IST++L SY C R         +A    +AS 
Sbjct: 12  PPPVPIPTYITSLGLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASF 71

Query: 66  PSPPTPVDNVV------------VLMVGLHGSIIESYPK---------LVLGESRRLPPP 125
                 V  ++            V++ GL  S+I SYPK         +V G+       
Sbjct: 72  SDRGVIVPRIIFVAEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEG 131

Query: 126 NNGPCSICLSDYKPHDSVRCIPDCRHCFHSDCVDQWLRMSATCPLCRNSPAP----TPLA 163
               CSICL +Y   + +R +P+C+H FH  C+D WL+++ +CP+CRNSP P    TP +
Sbjct: 132 RETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQS 191

[Close]
BLAST of Csa6G401350 vs. NCBI nr
Match: gi|449458135|ref|XP_004146803.1| (PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis sativus])

HSP 1 Score: 340.1 bits (871), Expect = 2.1e-90
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 

Query: 1   MSSAHPPSSPATGLGLGYGIAIAVSILVFISTVMLISYACIRVKSATTRPSASLPSPPTP 60
           MSSAHPPSSPATGLGLGYGIAIAVSILVFISTVMLISYACIRVKSATTRPSASLPSPPTP
Sbjct: 1   MSSAHPPSSPATGLGLGYGIAIAVSILVFISTVMLISYACIRVKSATTRPSASLPSPPTP 60

Query: 61  VDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHC 120
           VDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHC
Sbjct: 61  VDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHC 120

Query: 121 FHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 164
           FHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR
Sbjct: 121 FHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 163

[Close]
BLAST of Csa6G401350 vs. NCBI nr
Match: gi|659089237|ref|XP_008445399.1| (PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis melo])

HSP 1 Score: 308.5 bits (789), Expect = 6.9e-81
Identity = 154/168 (91.67%), Postives = 158/168 (94.05%), Query Frame = 1 

Query: 1   MSSAHPPSSPATGLGLGYGIAIAVSILVFISTVMLISYACIRVKSATT---RPSA-SLPS 60
           MSSAHPPSSPATG+GLGYGIAIAVSILVFISTVMLISYACIRVKS+T    RPSA SLPS
Sbjct: 1   MSSAHPPSSPATGVGLGYGIAIAVSILVFISTVMLISYACIRVKSSTRPRPRPSANSLPS 60

Query: 61  PPTP-VDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIP 120
           PP   VDNVVVLMVGL GSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIP
Sbjct: 61  PPAATVDNVVVLMVGLDGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIP 120

Query: 121 DCRHCFHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 164
           DCRHCFHSDCVD+WLRMSATCPLCRNSPAPTP+ATPLSE VPLASHAR
Sbjct: 121 DCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASHAR 168

[Close]
BLAST of Csa6G401350 vs. NCBI nr
Match: gi|1009118788|ref|XP_015876036.1| (PREDICTED: putative RING-H2 finger protein ATL69 [Ziziphus jujuba])

HSP 1 Score: 235.0 bits (598), Expect = 9.6e-59
Identity = 115/169 (68.05%), Postives = 135/169 (79.88%), Query Frame = 1 

Query: 2   SSAHPPSSPATGLGLGYGIAIAVSILVFISTVMLISYACIRVKSATTRPSASLPSPPTPV 61
           + A PP SP TG+GLGYGIAIAVSILV IST+ML SYAC+RVK++       LP+  T  
Sbjct: 4   AGADPPFSP-TGVGLGYGIAIAVSILVLISTIMLASYACVRVKASGAARRNRLPTTTTTT 63

Query: 62  ---DNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCR 121
                 VVL++GL GSIIESYPK+V+GESRRLP PN GPCSICLS+Y+P+DS+RCIP+C 
Sbjct: 64  ITSSEPVVLVMGLDGSIIESYPKIVVGESRRLPKPNEGPCSICLSEYQPNDSLRCIPECN 123

Query: 122 HCFHSDCVDQWLRMSATCPLCRNSPAP----TPLATPLSELVPLASHAR 164
           HCFHSDC+D+WLRM+ATCP+CRNSPAP    TPLATP SELVPLA H R
Sbjct: 124 HCFHSDCIDEWLRMTATCPMCRNSPAPSSANTPLATPQSELVPLAFHVR 171

[Close]
BLAST of Csa6G401350 vs. NCBI nr
Match: gi|296087810|emb|CBI35066.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 223.0 bits (567), Expect = 3.8e-55
Identity = 115/175 (65.71%), Postives = 136/175 (77.71%), Query Frame = 1 

Query: 1   MSSAHPPSSPATGLGLGYGIAIAVSILVFISTVMLISYACIRVK-SATTRPSASLPSP-- 60
           MS+A PP S A G+GLGYGIAIAVSILV IST+ML SYAC+RVK S  TR     P    
Sbjct: 1   MSTATPPES-AAGVGLGYGIAIAVSILVLISTIMLASYACVRVKASGGTRADHGRPGTNR 60

Query: 61  -PTPVD----NVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVR 120
             T VD      VV++ GL G  IESYPK+VLG+SRRLP PN+GPCSICLS+Y+P+++VR
Sbjct: 61  ESTAVDLSELAAVVVVAGLDGPAIESYPKMVLGQSRRLPRPNDGPCSICLSEYRPNETVR 120

Query: 121 CIPDCRHCFHSDCVDQWLRMSATCPLCRNSP----APTPLATPLSELVPLASHAR 164
            IP+C HCFH+DC+D+WLRMSATCP+CR+SP    APTPLATPLSE+VPLA HAR
Sbjct: 121 SIPECNHCFHADCIDEWLRMSATCPICRSSPAVSAAPTPLATPLSEVVPLAFHAR 174

[Close]
BLAST of Csa6G401350 vs. NCBI nr
Match: gi|225464029|ref|XP_002266804.1| (PREDICTED: putative RING-H2 finger protein ATL69 [Vitis vinifera])

HSP 1 Score: 223.0 bits (567), Expect = 3.8e-55
Identity = 115/175 (65.71%), Postives = 136/175 (77.71%), Query Frame = 1 

Query: 1   MSSAHPPSSPATGLGLGYGIAIAVSILVFISTVMLISYACIRVK-SATTRPSASLPSP-- 60
           MS+A PP S A G+GLGYGIAIAVSILV IST+ML SYAC+RVK S  TR     P    
Sbjct: 1   MSTATPPES-AAGVGLGYGIAIAVSILVLISTIMLASYACVRVKASGGTRADHGRPGTNR 60

Query: 61  -PTPVD----NVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVR 120
             T VD      VV++ GL G  IESYPK+VLG+SRRLP PN+GPCSICLS+Y+P+++VR
Sbjct: 61  ESTAVDLSELAAVVVVAGLDGPAIESYPKMVLGQSRRLPRPNDGPCSICLSEYRPNETVR 120

Query: 121 CIPDCRHCFHSDCVDQWLRMSATCPLCRNSP----APTPLATPLSELVPLASHAR 164
            IP+C HCFH+DC+D+WLRMSATCP+CR+SP    APTPLATPLSE+VPLA HAR
Sbjct: 121 SIPECNHCFHADCIDEWLRMSATCPICRSSPAVSAAPTPLATPLSEVVPLAFHAR 174

The following BLAST results are available for this feature:
BLAST of Csa6G401350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL69_ARATH5.5e-5465.03Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana GN=ATL69 PE=3 SV=1[more]
ATL70_ARATH7.9e-2940.94RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2 SV=1[more]
ATL71_ARATH6.7e-2839.64Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana GN=ATL71 PE=3 SV=1[more]
ATL68_ARATH5.7e-2737.82RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2 SV=1[more]
ATL67_ARATH7.4e-2738.62RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2 SV=1[more]
BLAST of Csa6G401350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFY2_CUCSA1.5e-90100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401350 PE=4 SV=1[more]
D7TX41_VITVI2.6e-5565.71Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0084g00140 PE=4 SV=... [more]
A0A072UT50_MEDTR2.2e-5461.02Uncharacterized protein OS=Medicago truncatula GN=MTR_3g012550 PE=4 SV=1[more]
A0A067L8Z0_JATCU2.9e-5463.79Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24568 PE=4 SV=1[more]
A0A078EDX7_BRANA4.2e-5365.82BnaC09g48210D protein OS=Brassica napus GN=BnaC09g48210D PE=4 SV=1[more]
BLAST of Csa6G401350 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G07040.13.1e-5565.03 RING/U-box superfamily protein[more]
AT2G35910.14.5e-3040.94 RING/U-box superfamily protein[more]
AT5G53110.13.8e-2939.86 RING/U-box superfamily protein[more]
AT5G06490.13.8e-2939.64 RING/U-box superfamily protein[more]
AT3G61550.13.2e-2837.82 RING/U-box superfamily protein[more]
BLAST of Csa6G401350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458135|ref|XP_004146803.1|2.1e-90100.00PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis sativus][more]
gi|659089237|ref|XP_008445399.1|6.9e-8191.67PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis melo][more]
gi|1009118788|ref|XP_015876036.1|9.6e-5968.05PREDICTED: putative RING-H2 finger protein ATL69 [Ziziphus jujuba][more]
gi|296087810|emb|CBI35066.3|3.8e-5565.71unnamed protein product [Vitis vinifera][more]
gi|225464029|ref|XP_002266804.1|3.8e-5565.71PREDICTED: putative RING-H2 finger protein ATL69 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G401350.1Csa6G401350.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 98..140
score: 4.4
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 98..139
score: 7.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 98..140
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 97..141
score: 5.4
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 8..161
score: 4.4
NoneNo IPR availablePANTHERPTHR14155:SF157RING-H2 FINGER PROTEIN ATL69-RELATEDcoord: 8..161
score: 4.4
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 93..144
score: 2.43