Carg09245 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09245
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ring finger protein, putative
Location	Cucurbita_argyrosperma_scaffold_018 : 186936 .. 187478 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCGCCGATTCCCCTTCGTCGTCGTCGTCCTCCTCCTCCGCCGCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCTGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA

mRNA sequence

ATGTCCTCCGCCGATTCCCCTTCGTCGTCGTCGTCCTCCTCCTCCGCCGCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCTGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA

Coding sequence (CDS)

ATGTCCTCCGCCGATTCCCCTTCGTCGTCGTCGTCCTCCTCCTCCGCCGCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCTGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA

Protein sequence

MSSADSPSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR

Homology

[Close]

BLAST of Carg09245 vs. NCBI nr
Match: XP_022961745.1 (putative RING-H2 finger protein ATL69 [Cucurbita moschata])

HSP 1 Score: 221.5 bits (563), Expect = 2.4e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 78  ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC 137
           ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC
Sbjct: 79  ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC 138

Query: 138 FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR
Sbjct: 139 FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181

[Close]

BLAST of Carg09245 vs. NCBI nr
Match: XP_022997272.1 (putative RING-H2 finger protein ATL69 [Cucurbita maxima])

HSP 1 Score: 221.5 bits (563), Expect = 2.4e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 78  ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC 137
           ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC
Sbjct: 76  ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC 135

Query: 138 FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR
Sbjct: 136 FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 178

[Close]

BLAST of Carg09245 vs. NCBI nr
Match: XP_023546361.1 (putative RING-H2 finger protein ATL69 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.5 bits (563), Expect = 2.4e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 78  ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC 137
           ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC
Sbjct: 72  ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC 131

Query: 138 FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR
Sbjct: 132 FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 174

[Close]

BLAST of Carg09245 vs. NCBI nr
Match: XP_008445399.1 (PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis melo])

HSP 1 Score: 206.1 bits (523), Expect = 1.0e-49
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 79  DNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCF 138
           DNVVVLMVGLDGSIIESYPKLVLGESRRLP PN+GPCSICLSDY+P+DSVRCIPDCRHCF
Sbjct: 67  DNVVVLMVGLDGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHCF 126

Query: 139 HSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           HS CVDEWLRMSATCPLCRNSPAPTPVATPLSEF PLAS+AR
Sbjct: 127 HSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASHAR 168

[Close]

BLAST of Carg09245 vs. NCBI nr
Match: XP_004146803.1 (PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis sativus] >KGN47764.1 hypothetical protein Csa_6G401350 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 1.6e-47
Identity = 91/102 (89.22%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 79  DNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCF 138
           DNVVVLMVGL GSIIESYPKLVLGESRRLP PN+GPCSICLSDY+P+DSVRCIPDCRHCF
Sbjct: 62  DNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHCF 121

Query: 139 HSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           HS CVD+WLRMSATCPLCRNSPAPTP+ATPLSE  PLAS+AR
Sbjct: 122 HSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 163

[Close]

BLAST of Carg09245 vs. TAIR10
Match: AT5G07040.1 (RING/U-box superfamily protein)

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-37
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 86  VGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSACVDE 145
           +GLD  +IESYP++VLG+SRRLP PN+GPCSICL DY+  + VRCIP+C HCFH+ CVDE
Sbjct: 65  LGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDE 124

Query: 146 WLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           WLR SATCPLCRNSPAP+ +ATPLS+  PLA   R
Sbjct: 125 WLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

[Close]

BLAST of Carg09245 vs. TAIR10
Match: AT5G53110.1 (RING/U-box superfamily protein)

HSP 1 Score: 120.9 bits (302), Expect = 7.8e-28
Identity = 47/78 (60.26%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 83  VLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSAC 142
           V+++GLDG  IESYPK+VLGES+RLP  +   C+ICLS+Y+P +++R IP C+HCFH+ C
Sbjct: 298 VIVMGLDGPTIESYPKIVLGESKRLPKVDDATCAICLSEYEPKETLRTIPQCQHCFHADC 357

Query: 143 VDEWLRMSATCPLCRNSP 161
           +DEWL+++ TCP+CRNSP
Sbjct: 358 IDEWLKLNGTCPVCRNSP 375

[Close]

BLAST of Carg09245 vs. TAIR10
Match: AT2G46495.1 (RING/U-box superfamily protein)

HSP 1 Score: 114.0 bits (284), Expect = 9.6e-26
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 80  NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHG-PCSICLSDYQPYDSVRCIPDCRHCF 139
           N V++  GLD SIIESY K  LGESRRLP  N    C ICLS+Y   ++VRCIP+C HCF
Sbjct: 284 NEVIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCF 343

Query: 140 HSACVDEWLRMSATCPLCRNSPAP 163
           HS C+D WL++  +CPLCRNSP+P
Sbjct: 344 HSECIDVWLKIHGSCPLCRNSPSP 367

[Close]

BLAST of Carg09245 vs. TAIR10
Match: AT1G28040.1 (RING/U-box superfamily protein)

HSP 1 Score: 108.2 bits (269), Expect = 5.3e-24
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 82  VVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSA 141
           VV+  GLD S IESY K+ LGESRRLP  N   C ICLS+Y   ++VRC+P+C HCFH  
Sbjct: 220 VVVTTGLDQSTIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQ 279

Query: 142 CVDEWLRMSATCPLCRNS 160
           C+DEWL++ ++CP+CRNS
Sbjct: 280 CIDEWLKIHSSCPVCRNS 297

[Close]

BLAST of Carg09245 vs. TAIR10
Match: AT2G25410.1 (RING/U-box superfamily protein)

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-23
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 83  VLMVGLDGSIIESYPKLVLGESRRLP-APNHGPCSICLSDYQPYDSVRCIPDCRHCFHSA 142
           V  +GLD S IESY K+ LGESRRLP   N   C ICLS+Y   ++VRC+P+C HCFH+ 
Sbjct: 294 VARIGLDESTIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTE 353

Query: 143 CVDEWLRMSATCPLCRNSPAP 163
           C+D WL++ ++CP+CR++P+P
Sbjct: 354 CIDAWLKLHSSCPVCRSNPSP 374

[Close]

BLAST of Carg09245 vs. Swiss-Prot
Match: sp|Q9FL42|ATL69_ARATH (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.6e-36
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 86  VGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSACVDE 145
           +GLD  +IESYP++VLG+SRRLP PN+GPCSICL DY+  + VRCIP+C HCFH+ CVDE
Sbjct: 65  LGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDE 124

Query: 146 WLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           WLR SATCPLCRNSPAP+ +ATPLS+  PLA   R
Sbjct: 125 WLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

[Close]

BLAST of Carg09245 vs. Swiss-Prot
Match: sp|P0CH01|AT21A_ARATH (Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-24
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 80  NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHG-PCSICLSDYQPYDSVRCIPDCRHCF 139
           N V++  GLD SIIESY K  LGESRRLP  N    C ICLS+Y   ++VRCIP+C HCF
Sbjct: 284 NEVIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCF 343

Query: 140 HSACVDEWLRMSATCPLCRNSPAP 163
           HS C+D WL++  +CPLCRNSP+P
Sbjct: 344 HSECIDVWLKIHGSCPLCRNSPSP 367

[Close]

BLAST of Carg09245 vs. Swiss-Prot
Match: sp|Q9C7E9|ATL20_ARATH (RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 9.5e-23
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 82  VVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSA 141
           VV+  GLD S IESY K+ LGESRRLP  N   C ICLS+Y   ++VRC+P+C HCFH  
Sbjct: 220 VVVTTGLDQSTIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQ 279

Query: 142 CVDEWLRMSATCPLCRNS 160
           C+DEWL++ ++CP+CRNS
Sbjct: 280 CIDEWLKIHSSCPVCRNS 297

[Close]

BLAST of Carg09245 vs. Swiss-Prot
Match: sp|Q9SKK8|ATL22_ARATH (RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 4.7e-22
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 83  VLMVGLDGSIIESYPKLVLGESRRLP-APNHGPCSICLSDYQPYDSVRCIPDCRHCFHSA 142
           V  +GLD S IESY K+ LGESRRLP   N   C ICLS+Y   ++VRC+P+C HCFH+ 
Sbjct: 294 VARIGLDESTIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTE 353

Query: 143 CVDEWLRMSATCPLCRNSPAP 163
           C+D WL++ ++CP+CR++P+P
Sbjct: 354 CIDAWLKLHSSCPVCRSNPSP 374

[Close]

BLAST of Carg09245 vs. Swiss-Prot
Match: sp|Q8RX29|ATL70_ARATH (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.2e-21
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 87  GLDGSIIESYPKLVLGESRRLPAPNHGP-----CSICLSDYQPYDSVRCIPDCRHCFHSA 146
           GLD   I+SYPK++  E++       GP     C+ICL DY+    +R +PDC H FH  
Sbjct: 121 GLDEDTIQSYPKILYSEAK-------GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLK 180

Query: 147 CVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASN 179
           C+D WLR++ TCP+CR SP PTP++TPL+E  PLAS+
Sbjct: 181 CIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASS 210

[Close]

BLAST of Carg09245 vs. TrEMBL
Match: tr|A0A1S3BCM0|A0A1S3BCM0_CUCME (putative RING-H2 finger protein ATL69 OS=Cucumis melo OX=3656 GN=LOC103488437 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 6.8e-50
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 79  DNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCF 138
           DNVVVLMVGLDGSIIESYPKLVLGESRRLP PN+GPCSICLSDY+P+DSVRCIPDCRHCF
Sbjct: 67  DNVVVLMVGLDGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHCF 126

Query: 139 HSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           HS CVDEWLRMSATCPLCRNSPAPTPVATPLSEF PLAS+AR
Sbjct: 127 HSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASHAR 168

[Close]

BLAST of Carg09245 vs. TrEMBL
Match: tr|A0A0A0KFY2|A0A0A0KFY2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401350 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 91/102 (89.22%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 79  DNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCF 138
           DNVVVLMVGL GSIIESYPKLVLGESRRLP PN+GPCSICLSDY+P+DSVRCIPDCRHCF
Sbjct: 62  DNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHCF 121

Query: 139 HSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           HS CVD+WLRMSATCPLCRNSPAPTP+ATPLSE  PLAS+AR
Sbjct: 122 HSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 163

[Close]

BLAST of Carg09245 vs. TrEMBL
Match: tr|A0A2I4H9G5|A0A2I4H9G5_9ROSI (putative RING-H2 finger protein ATL69 OS=Juglans regia OX=51240 GN=LOC109014744 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.3e-40
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 82  VVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSA 141
           V++++GLDGSIIESYPK VLGESRRLP PNHGPCSICLSDY P D++RCIPDC HCFH+ 
Sbjct: 4   VIVVMGLDGSIIESYPKTVLGESRRLPKPNHGPCSICLSDYLPKDTIRCIPDCHHCFHAN 63

Query: 142 CVDEWLRMSATCPLCRNSPAPT-----PVATPLSEFAPLASNAR 181
           C+DEWLRMSATCPLCR SPAP+     P+ATPLSE APLA + R
Sbjct: 64  CIDEWLRMSATCPLCRTSPAPSATPSPPLATPLSELAPLAFHTR 107

[Close]

BLAST of Carg09245 vs. TrEMBL
Match: tr|A0A2I4GZW7|A0A2I4GZW7_9ROSI (putative RING-H2 finger protein ATL69 OS=Juglans regia OX=51240 GN=LOC109012335 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.3e-40
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 82  VVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSA 141
           V++++GLDGSIIESYPK VLGESRRLP PNHGPCSICLSDY P D++RCIPDC HCFH+ 
Sbjct: 81  VIVVMGLDGSIIESYPKTVLGESRRLPKPNHGPCSICLSDYLPKDTIRCIPDCHHCFHAN 140

Query: 142 CVDEWLRMSATCPLCRNSPAPT-----PVATPLSEFAPLASNAR 181
           C+DEWLRMSATCPLCR SPAP+     P+ATPLSE APLA + R
Sbjct: 141 CIDEWLRMSATCPLCRTSPAPSATPSPPLATPLSELAPLAFHTR 184

[Close]

BLAST of Carg09245 vs. TrEMBL
Match: tr|A0A2P4GLY7|A0A2P4GLY7_QUESU (Putative ring-h2 finger protein atl69 OS=Quercus suber OX=58331 GN=CFP56_74113 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.1e-39
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 82  VVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSA 141
           VV+++GLDGS IESYPK+VLGESRRLP PN+GPCSICLSDYQP D++RCIP+C HCFH+ 
Sbjct: 81  VVMVMGLDGSNIESYPKIVLGESRRLPKPNNGPCSICLSDYQPRDTIRCIPECHHCFHAN 140

Query: 142 CVDEWLRMSATCPLCRNSPAP----TPVATPLSEFAPLASNAR 181
           C+D+WL+MSATCPLCRNSPAP    TP+ATPLSE  PLA +AR
Sbjct: 141 CIDQWLQMSATCPLCRNSPAPSGNSTPLATPLSELVPLAFHAR 183

The following BLAST results are available for this feature:

BLAST of Carg09245 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961745.1	2.4e-54	100.00	putative RING-H2 finger protein ATL69 [Cucurbita moschata]	[more]
XP_022997272.1	2.4e-54	100.00	putative RING-H2 finger protein ATL69 [Cucurbita maxima]	[more]
XP_023546361.1	2.4e-54	100.00	putative RING-H2 finger protein ATL69 [Cucurbita pepo subsp. pepo]	[more]
XP_008445399.1	1.0e-49	93.14	PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis melo]	[more]
XP_004146803.1	1.6e-47	89.22	PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis sativus] >KGN47764.1 h...	[more]

BLAST of Carg09245 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07040.1	1.4e-37	69.47	RING/U-box superfamily protein	[more]
AT5G53110.1	7.8e-28	60.26	RING/U-box superfamily protein	[more]
AT2G46495.1	9.6e-26	60.71	RING/U-box superfamily protein	[more]
AT1G28040.1	5.3e-24	58.97	RING/U-box superfamily protein	[more]
AT2G25410.1	2.6e-23	54.32	RING/U-box superfamily protein	[more]

BLAST of Carg09245 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FL42\|ATL69_ARATH	2.6e-36	69.47	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
sp\|P0CH01\|AT21A_ARATH	1.7e-24	60.71	Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A...	[more]
sp\|Q9C7E9\|ATL20_ARATH	9.5e-23	58.97	RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2	[more]
sp\|Q9SKK8\|ATL22_ARATH	4.7e-22	54.32	RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2	[more]
sp\|Q8RX29\|ATL70_ARATH	5.2e-21	48.45	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]

BLAST of Carg09245 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BCM0\|A0A1S3BCM0_CUCME	6.8e-50	93.14	putative RING-H2 finger protein ATL69 OS=Cucumis melo OX=3656 GN=LOC103488437 PE...	[more]
tr\|A0A0A0KFY2\|A0A0A0KFY2_CUCSA	1.1e-47	89.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401350 PE=4 SV=1	[more]
tr\|A0A2I4H9G5\|A0A2I4H9G5_9ROSI	6.3e-40	75.00	putative RING-H2 finger protein ATL69 OS=Juglans regia OX=51240 GN=LOC109014744 ...	[more]
tr\|A0A2I4GZW7\|A0A2I4GZW7_9ROSI	6.3e-40	75.00	putative RING-H2 finger protein ATL69 OS=Juglans regia OX=51240 GN=LOC109012335 ...	[more]
tr\|A0A2P4GLY7\|A0A2P4GLY7_QUESU	1.1e-39	74.76	Putative ring-h2 finger protein atl69 OS=Quercus suber OX=58331 GN=CFP56_74113 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09245-RA	Carg09245-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 115..156 e-value: 3.9E-5 score: 33.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 115..157 e-value: 2.9E-12 score: 46.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 115..157 score: 12.268
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 81..162 e-value: 1.8E-18 score: 68.0
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 19..169
None	No IPR available	PANTHER	PTHR14155:SF157	RING-H2 FINGER PROTEIN ATL69-RELATED	coord: 19..169
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 114..161

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09245	Cla022054	Watermelon (97103) v1	carwmB0134
Carg09245	Csa6G401350	Cucumber (Chinese Long) v2	carcuB0157
Carg09245	MELO3C011390	Melon (DHL92) v3.5.1	carmeB0142
Carg09245	ClCG08G010710	Watermelon (Charleston Gray)	carwcgB0138
Carg09245	CSPI06G20790	Wild cucumber (PI 183967)	carcpiB0162
Carg09245	Cucsa.005140	Cucumber (Gy14) v1	carcgyB0169
Carg09245	CmaCh05G004670	Cucurbita maxima (Rimu)	carcmaB0189
Carg09245	CmoCh05G004900	Cucurbita moschata (Rifu)	carcmoB0196
Carg09245	Lsi08G009260	Bottle gourd (USVL1VR-Ls)	carlsiB129
Carg09245	Cp4.1LG11g03980	Cucurbita pepo (Zucchini)	carcpeB0199
Carg09245	CsGy6G020140	Cucumber (Gy14) v2	carcgybB0155
Carg09245	MELO3C011390.2	Melon (DHL92) v3.6.1	carmedB0146
Carg09245	Cla97C08G153590	Watermelon (97103) v2	carwmbB0150
Carg09245	Bhi04G000949	Wax gourd	carwgoB0177

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09245	Silver-seed gourd	carcarB164
Carg09245	Cucurbita maxima (Rimu)	carcmaB0185
Carg09245	Cucurbita moschata (Rifu)	carcmoB0194
Carg09245	Cucurbita pepo (Zucchini)	carcpeB0207
Carg09245	Cucumber (Chinese Long) v3	carcucB0165