Carg09245-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09245-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ring finger protein, putative
Location	Cucurbita_argyrosperma_scaffold_018 : 186936 .. 187478 (-)
Sequence length	543

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCGCCGATTCCCCTTCGTCGTCGTCGTCCTCCTCCTCCGCCGCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCTGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA

mRNA sequence

ATGTCCTCCGCCGATTCCCCTTCGTCGTCGTCGTCCTCCTCCTCCGCCGCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCTGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA

Coding sequence (CDS)

ATGTCCTCCGCCGATTCCCCTTCGTCGTCGTCGTCCTCCTCCTCCGCCGCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCTGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA

Protein sequence

MSSADSPSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR

Homology

[Close]

BLAST of Carg09245-RA vs. NCBI nr
Match: XP_022961745.1 (putative RING-H2 finger protein ATL69 [Cucurbita moschata])

HSP 1 Score: 221.5 bits (563), Expect = 2.4e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 78  ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC 137
           ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC
Sbjct: 79  ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC 138

Query: 138 FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR
Sbjct: 139 FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181

[Close]

BLAST of Carg09245-RA vs. NCBI nr
Match: XP_022997272.1 (putative RING-H2 finger protein ATL69 [Cucurbita maxima])

HSP 1 Score: 221.5 bits (563), Expect = 2.4e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 78  ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC 137
           ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC
Sbjct: 76  ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC 135

Query: 138 FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR
Sbjct: 136 FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 178

[Close]

BLAST of Carg09245-RA vs. NCBI nr
Match: XP_023546361.1 (putative RING-H2 finger protein ATL69 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.5 bits (563), Expect = 2.4e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 78  ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC 137
           ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC
Sbjct: 72  ADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHC 131

Query: 138 FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR
Sbjct: 132 FHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 174

[Close]

BLAST of Carg09245-RA vs. NCBI nr
Match: XP_008445399.1 (PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis melo])

HSP 1 Score: 206.1 bits (523), Expect = 1.0e-49
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 79  DNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCF 138
           DNVVVLMVGLDGSIIESYPKLVLGESRRLP PN+GPCSICLSDY+P+DSVRCIPDCRHCF
Sbjct: 67  DNVVVLMVGLDGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHCF 126

Query: 139 HSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           HS CVDEWLRMSATCPLCRNSPAPTPVATPLSEF PLAS+AR
Sbjct: 127 HSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASHAR 168

[Close]

BLAST of Carg09245-RA vs. NCBI nr
Match: XP_004146803.1 (PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis sativus] >KGN47764.1 hypothetical protein Csa_6G401350 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 1.6e-47
Identity = 91/102 (89.22%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 79  DNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCF 138
           DNVVVLMVGL GSIIESYPKLVLGESRRLP PN+GPCSICLSDY+P+DSVRCIPDCRHCF
Sbjct: 62  DNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHCF 121

Query: 139 HSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           HS CVD+WLRMSATCPLCRNSPAPTP+ATPLSE  PLAS+AR
Sbjct: 122 HSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 163

[Close]

BLAST of Carg09245-RA vs. TAIR10
Match: AT5G07040.1 (RING/U-box superfamily protein)

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-37
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 86  VGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSACVDE 145
           +GLD  +IESYP++VLG+SRRLP PN+GPCSICL DY+  + VRCIP+C HCFH+ CVDE
Sbjct: 65  LGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDE 124

Query: 146 WLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           WLR SATCPLCRNSPAP+ +ATPLS+  PLA   R
Sbjct: 125 WLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

[Close]

BLAST of Carg09245-RA vs. TAIR10
Match: AT5G53110.1 (RING/U-box superfamily protein)

HSP 1 Score: 120.9 bits (302), Expect = 7.8e-28
Identity = 47/78 (60.26%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 83  VLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSAC 142
           V+++GLDG  IESYPK+VLGES+RLP  +   C+ICLS+Y+P +++R IP C+HCFH+ C
Sbjct: 298 VIVMGLDGPTIESYPKIVLGESKRLPKVDDATCAICLSEYEPKETLRTIPQCQHCFHADC 357

Query: 143 VDEWLRMSATCPLCRNSP 161
           +DEWL+++ TCP+CRNSP
Sbjct: 358 IDEWLKLNGTCPVCRNSP 375

[Close]

BLAST of Carg09245-RA vs. TAIR10
Match: AT2G46495.1 (RING/U-box superfamily protein)

HSP 1 Score: 114.0 bits (284), Expect = 9.6e-26
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 80  NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHG-PCSICLSDYQPYDSVRCIPDCRHCF 139
           N V++  GLD SIIESY K  LGESRRLP  N    C ICLS+Y   ++VRCIP+C HCF
Sbjct: 284 NEVIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCF 343

Query: 140 HSACVDEWLRMSATCPLCRNSPAP 163
           HS C+D WL++  +CPLCRNSP+P
Sbjct: 344 HSECIDVWLKIHGSCPLCRNSPSP 367

[Close]

BLAST of Carg09245-RA vs. TAIR10
Match: AT1G28040.1 (RING/U-box superfamily protein)

HSP 1 Score: 108.2 bits (269), Expect = 5.3e-24
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 82  VVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSA 141
           VV+  GLD S IESY K+ LGESRRLP  N   C ICLS+Y   ++VRC+P+C HCFH  
Sbjct: 220 VVVTTGLDQSTIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQ 279

Query: 142 CVDEWLRMSATCPLCRNS 160
           C+DEWL++ ++CP+CRNS
Sbjct: 280 CIDEWLKIHSSCPVCRNS 297

[Close]

BLAST of Carg09245-RA vs. TAIR10
Match: AT2G25410.1 (RING/U-box superfamily protein)

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-23
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 83  VLMVGLDGSIIESYPKLVLGESRRLP-APNHGPCSICLSDYQPYDSVRCIPDCRHCFHSA 142
           V  +GLD S IESY K+ LGESRRLP   N   C ICLS+Y   ++VRC+P+C HCFH+ 
Sbjct: 294 VARIGLDESTIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTE 353

Query: 143 CVDEWLRMSATCPLCRNSPAP 163
           C+D WL++ ++CP+CR++P+P
Sbjct: 354 CIDAWLKLHSSCPVCRSNPSP 374

[Close]

BLAST of Carg09245-RA vs. Swiss-Prot
Match: sp|Q9FL42|ATL69_ARATH (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.6e-36
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 86  VGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSACVDE 145
           +GLD  +IESYP++VLG+SRRLP PN+GPCSICL DY+  + VRCIP+C HCFH+ CVDE
Sbjct: 65  LGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDE 124

Query: 146 WLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           WLR SATCPLCRNSPAP+ +ATPLS+  PLA   R
Sbjct: 125 WLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

[Close]

BLAST of Carg09245-RA vs. Swiss-Prot
Match: sp|P0CH01|AT21A_ARATH (Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-24
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 80  NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHG-PCSICLSDYQPYDSVRCIPDCRHCF 139
           N V++  GLD SIIESY K  LGESRRLP  N    C ICLS+Y   ++VRCIP+C HCF
Sbjct: 284 NEVIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCF 343

Query: 140 HSACVDEWLRMSATCPLCRNSPAP 163
           HS C+D WL++  +CPLCRNSP+P
Sbjct: 344 HSECIDVWLKIHGSCPLCRNSPSP 367

[Close]

BLAST of Carg09245-RA vs. Swiss-Prot
Match: sp|Q9C7E9|ATL20_ARATH (RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 9.5e-23
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 82  VVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSA 141
           VV+  GLD S IESY K+ LGESRRLP  N   C ICLS+Y   ++VRC+P+C HCFH  
Sbjct: 220 VVVTTGLDQSTIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQ 279

Query: 142 CVDEWLRMSATCPLCRNS 160
           C+DEWL++ ++CP+CRNS
Sbjct: 280 CIDEWLKIHSSCPVCRNS 297

[Close]

BLAST of Carg09245-RA vs. Swiss-Prot
Match: sp|Q9SKK8|ATL22_ARATH (RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 4.7e-22
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 83  VLMVGLDGSIIESYPKLVLGESRRLP-APNHGPCSICLSDYQPYDSVRCIPDCRHCFHSA 142
           V  +GLD S IESY K+ LGESRRLP   N   C ICLS+Y   ++VRC+P+C HCFH+ 
Sbjct: 294 VARIGLDESTIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTE 353

Query: 143 CVDEWLRMSATCPLCRNSPAP 163
           C+D WL++ ++CP+CR++P+P
Sbjct: 354 CIDAWLKLHSSCPVCRSNPSP 374

[Close]

BLAST of Carg09245-RA vs. Swiss-Prot
Match: sp|Q8RX29|ATL70_ARATH (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.2e-21
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 87  GLDGSIIESYPKLVLGESRRLPAPNHGP-----CSICLSDYQPYDSVRCIPDCRHCFHSA 146
           GLD   I+SYPK++  E++       GP     C+ICL DY+    +R +PDC H FH  
Sbjct: 121 GLDEDTIQSYPKILYSEAK-------GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLK 180

Query: 147 CVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASN 179
           C+D WLR++ TCP+CR SP PTP++TPL+E  PLAS+
Sbjct: 181 CIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASS 210

[Close]

BLAST of Carg09245-RA vs. TrEMBL
Match: tr|A0A1S3BCM0|A0A1S3BCM0_CUCME (putative RING-H2 finger protein ATL69 OS=Cucumis melo OX=3656 GN=LOC103488437 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 6.8e-50
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 79  DNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCF 138
           DNVVVLMVGLDGSIIESYPKLVLGESRRLP PN+GPCSICLSDY+P+DSVRCIPDCRHCF
Sbjct: 67  DNVVVLMVGLDGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHCF 126

Query: 139 HSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           HS CVDEWLRMSATCPLCRNSPAPTPVATPLSEF PLAS+AR
Sbjct: 127 HSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASHAR 168

[Close]

BLAST of Carg09245-RA vs. TrEMBL
Match: tr|A0A0A0KFY2|A0A0A0KFY2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401350 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 91/102 (89.22%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 79  DNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCF 138
           DNVVVLMVGL GSIIESYPKLVLGESRRLP PN+GPCSICLSDY+P+DSVRCIPDCRHCF
Sbjct: 62  DNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPDCRHCF 121

Query: 139 HSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
           HS CVD+WLRMSATCPLCRNSPAPTP+ATPLSE  PLAS+AR
Sbjct: 122 HSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 163

[Close]

BLAST of Carg09245-RA vs. TrEMBL
Match: tr|A0A2I4H9G5|A0A2I4H9G5_9ROSI (putative RING-H2 finger protein ATL69 OS=Juglans regia OX=51240 GN=LOC109014744 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.3e-40
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 82  VVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSA 141
           V++++GLDGSIIESYPK VLGESRRLP PNHGPCSICLSDY P D++RCIPDC HCFH+ 
Sbjct: 4   VIVVMGLDGSIIESYPKTVLGESRRLPKPNHGPCSICLSDYLPKDTIRCIPDCHHCFHAN 63

Query: 142 CVDEWLRMSATCPLCRNSPAPT-----PVATPLSEFAPLASNAR 181
           C+DEWLRMSATCPLCR SPAP+     P+ATPLSE APLA + R
Sbjct: 64  CIDEWLRMSATCPLCRTSPAPSATPSPPLATPLSELAPLAFHTR 107

[Close]

BLAST of Carg09245-RA vs. TrEMBL
Match: tr|A0A2I4GZW7|A0A2I4GZW7_9ROSI (putative RING-H2 finger protein ATL69 OS=Juglans regia OX=51240 GN=LOC109012335 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.3e-40
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 82  VVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSA 141
           V++++GLDGSIIESYPK VLGESRRLP PNHGPCSICLSDY P D++RCIPDC HCFH+ 
Sbjct: 81  VIVVMGLDGSIIESYPKTVLGESRRLPKPNHGPCSICLSDYLPKDTIRCIPDCHHCFHAN 140

Query: 142 CVDEWLRMSATCPLCRNSPAPT-----PVATPLSEFAPLASNAR 181
           C+DEWLRMSATCPLCR SPAP+     P+ATPLSE APLA + R
Sbjct: 141 CIDEWLRMSATCPLCRTSPAPSATPSPPLATPLSELAPLAFHTR 184

[Close]

BLAST of Carg09245-RA vs. TrEMBL
Match: tr|A0A2P4GLY7|A0A2P4GLY7_QUESU (Putative ring-h2 finger protein atl69 OS=Quercus suber OX=58331 GN=CFP56_74113 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.1e-39
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 82  VVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSA 141
           VV+++GLDGS IESYPK+VLGESRRLP PN+GPCSICLSDYQP D++RCIP+C HCFH+ 
Sbjct: 81  VVMVMGLDGSNIESYPKIVLGESRRLPKPNNGPCSICLSDYQPRDTIRCIPECHHCFHAN 140

Query: 142 CVDEWLRMSATCPLCRNSPAP----TPVATPLSEFAPLASNAR 181
           C+D+WL+MSATCPLCRNSPAP    TP+ATPLSE  PLA +AR
Sbjct: 141 CIDQWLQMSATCPLCRNSPAPSGNSTPLATPLSELVPLAFHAR 183

The following BLAST results are available for this feature:

BLAST of Carg09245-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961745.1	2.4e-54	100.00	putative RING-H2 finger protein ATL69 [Cucurbita moschata]	[more]
XP_022997272.1	2.4e-54	100.00	putative RING-H2 finger protein ATL69 [Cucurbita maxima]	[more]
XP_023546361.1	2.4e-54	100.00	putative RING-H2 finger protein ATL69 [Cucurbita pepo subsp. pepo]	[more]
XP_008445399.1	1.0e-49	93.14	PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis melo]	[more]
XP_004146803.1	1.6e-47	89.22	PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis sativus] >KGN47764.1 h...	[more]

BLAST of Carg09245-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07040.1	1.4e-37	69.47	RING/U-box superfamily protein	[more]
AT5G53110.1	7.8e-28	60.26	RING/U-box superfamily protein	[more]
AT2G46495.1	9.6e-26	60.71	RING/U-box superfamily protein	[more]
AT1G28040.1	5.3e-24	58.97	RING/U-box superfamily protein	[more]
AT2G25410.1	2.6e-23	54.32	RING/U-box superfamily protein	[more]

BLAST of Carg09245-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FL42\|ATL69_ARATH	2.6e-36	69.47	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
sp\|P0CH01\|AT21A_ARATH	1.7e-24	60.71	Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A...	[more]
sp\|Q9C7E9\|ATL20_ARATH	9.5e-23	58.97	RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2	[more]
sp\|Q9SKK8\|ATL22_ARATH	4.7e-22	54.32	RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2	[more]
sp\|Q8RX29\|ATL70_ARATH	5.2e-21	48.45	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]

BLAST of Carg09245-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BCM0\|A0A1S3BCM0_CUCME	6.8e-50	93.14	putative RING-H2 finger protein ATL69 OS=Cucumis melo OX=3656 GN=LOC103488437 PE...	[more]
tr\|A0A0A0KFY2\|A0A0A0KFY2_CUCSA	1.1e-47	89.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401350 PE=4 SV=1	[more]
tr\|A0A2I4H9G5\|A0A2I4H9G5_9ROSI	6.3e-40	75.00	putative RING-H2 finger protein ATL69 OS=Juglans regia OX=51240 GN=LOC109014744 ...	[more]
tr\|A0A2I4GZW7\|A0A2I4GZW7_9ROSI	6.3e-40	75.00	putative RING-H2 finger protein ATL69 OS=Juglans regia OX=51240 GN=LOC109012335 ...	[more]
tr\|A0A2P4GLY7\|A0A2P4GLY7_QUESU	1.1e-39	74.76	Putative ring-h2 finger protein atl69 OS=Quercus suber OX=58331 GN=CFP56_74113 P...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg09245	Carg09245	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09245-RA.CDS.1	Carg09245-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09245-RA.exon.1	Carg09245-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg09245-RA	Carg09245-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 115..156 e-value: 3.9E-5 score: 33.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 115..157 e-value: 2.9E-12 score: 46.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 115..157 score: 12.268
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 81..162 e-value: 1.8E-18 score: 68.0
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 19..169
None	No IPR available	PANTHER	PTHR14155:SF157	RING-H2 FINGER PROTEIN ATL69-RELATED	coord: 19..169
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 114..161