CmoCh05G004900 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G004900
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRing finger protein, putative
LocationCmo_Chr05 : 2312974 .. 2313519 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCGCCGATTCCCCTTCGTCGTCGTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCGGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA

mRNA sequence

ATGTCCTCCGCCGATTCCCCTTCGTCGTCGTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCGGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA

Coding sequence (CDS)

ATGTCCTCCGCCGATTCCCCTTCGTCGTCGTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCGGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA
Homology
[Close]
BLAST of CmoCh05G004900 vs. Swiss-Prot
Match: ATL69_ARATH (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana GN=ATL69 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.6e-49
Identity = 103/160 (64.38%), Postives = 120/160 (75.00%), Query Frame = 1 

Query: 22  SPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPPPAADN 81
           SP  +GVGLGYGIAIAVSILV IS IML SY CIR+KST  R          LP PAA+ 
Sbjct: 5   SPPASGVGLGYGIAIAVSILVLISFIMLASYICIRSKSTG-RDEATSDVVLDLPSPAAE- 64

Query: 82  VVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHS 141
              + +GLD  +IESYP++VLG+SRRLP PN+GPCSICL DY+  + VRCIP+C HCFH+
Sbjct: 65  ---VKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHT 124

Query: 142 ACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 182
            CVDEWLR SATCPLCRNSPAP+ +ATPLS+  PLA   R
Sbjct: 125 DCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

[Close]
BLAST of CmoCh05G004900 vs. Swiss-Prot
Match: ATL71_ARATH (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana GN=ATL71 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.4e-28
Identity = 69/169 (40.83%), Postives = 96/169 (56.80%), Query Frame = 1 

Query: 29  GLGYGIAIAVSILVFISTIMLVSYACIRAK-----STRPRPRPRPRPSAPLPPPA----- 88
           GL YGI +++ IL+ I+TI L SY C R+      +T PR R R R S    PP      
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFD 81

Query: 89  -----ADNVVVLMVGLDGSIIESYPKLVLGESR-----RLPAPNHGPCSICLSDYQPYDS 148
                +D VVV ++GL   +I+ +PKL   E+R     +  +     CSICL+DY+  D 
Sbjct: 82  FEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDM 141

Query: 149 VRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLA 178
           +R +PDC H FH  CVD WLR+  TCP+CR SP P+P  TP+++  P +
Sbjct: 142 IRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]
BLAST of CmoCh05G004900 vs. Swiss-Prot
Match: ATL70_ARATH (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.7e-25
Identity = 62/156 (39.74%), Postives = 93/156 (59.62%), Query Frame = 1 

Query: 29  GLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPPPAADNVVVLMVG 88
           G  YGI +++ +L+ I+TI L SY C R + +   P    + S  +       ++ ++ G
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSS-PSQTNQDSTRIHHHHHHVIIDVVPG 122

Query: 89  LDGSIIESYPKLVLGESRRLPAPNHGP-----CSICLSDYQPYDSVRCIPDCRHCFHSAC 148
           LD   I+SYPK++  E++       GP     C+ICL DY+    +R +PDC H FH  C
Sbjct: 123 LDEDTIQSYPKILYSEAK-------GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKC 182

Query: 149 VDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASN 180
           +D WLR++ TCP+CR SP PTP++TPL+E  PLAS+
Sbjct: 183 IDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASS 210

[Close]
BLAST of CmoCh05G004900 vs. Swiss-Prot
Match: AT21A_ARATH (Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-24
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 1 

Query: 81  NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHG-PCSICLSDYQPYDSVRCIPDCRHCF 140
           N V++  GLD SIIESY K  LGESRRLP  N    C ICLS+Y   ++VRCIP+C HCF
Sbjct: 284 NEVIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCF 343

Query: 141 HSACVDEWLRMSATCPLCRNSPAP 164
           HS C+D WL++  +CPLCRNSP+P
Sbjct: 344 HSECIDVWLKIHGSCPLCRNSPSP 367

[Close]
BLAST of CmoCh05G004900 vs. Swiss-Prot
Match: ATL20_ARATH (RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 1 

Query: 53  ACIRAKSTRPRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPN 112
           A I A++T  +PR                 VV+  GLD S IESY K+ LGESRRLP  N
Sbjct: 206 AAITARNTTQQPRG----------------VVVTTGLDQSTIESYKKVELGESRRLPGTN 265

Query: 113 HGPCSICLSDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNS 161
              C ICLS+Y   ++VRC+P+C HCFH  C+DEWL++ ++CP+CRNS
Sbjct: 266 GIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCRNS 297

[Close]
BLAST of CmoCh05G004900 vs. TrEMBL
Match: A0A0A0KFY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401350 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.4e-64
Identity = 132/167 (79.04%), Postives = 142/167 (85.03%), Query Frame = 1 

Query: 15  SSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPL 74
           SSA   +SPA  G+GLGYGIAIAVSILVFIST+ML+SYACIR KS   RP      S P 
Sbjct: 2   SSAHPPSSPA-TGLGLGYGIAIAVSILVFISTVMLISYACIRVKSATTRPSA----SLPS 61

Query: 75  PPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPD 134
           PP   DNVVVLMVGL GSIIESYPKLVLGESRRLP PN+GPCSICLSDY+P+DSVRCIPD
Sbjct: 62  PPTPVDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPD 121

Query: 135 CRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 182
           CRHCFHS CVD+WLRMSATCPLCRNSPAPTP+ATPLSE  PLAS+AR
Sbjct: 122 CRHCFHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 163

[Close]
BLAST of CmoCh05G004900 vs. TrEMBL
Match: R0H0Y3_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10003611mg PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 7.7e-48
Identity = 105/161 (65.22%), Postives = 120/161 (74.53%), Query Frame = 1 

Query: 22  SPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSA-PLPPPAAD 81
           SP  +GVGLGYGIAIAVSILV IS IML SY CIR+KST      R    A   P PAA+
Sbjct: 5   SPPPSGVGLGYGIAIAVSILVLISFIMLASYICIRSKSTGRGDEARTSDGALDSPSPAAE 64

Query: 82  NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFH 141
               + +GLD  +IESYPK+VLG+SRRLP PN GPCSICL DY+  + VRCIP+C HCFH
Sbjct: 65  ----VKLGLDRPVIESYPKIVLGDSRRLPRPNSGPCSICLCDYEAREPVRCIPECNHCFH 124

Query: 142 SACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 182
           + CVDEWLR SATCPLCRNSPAP+ +ATPLS F+PLA   R
Sbjct: 125 TDCVDEWLRTSATCPLCRNSPAPSRLATPLSHFSPLAFQIR 161

[Close]
BLAST of CmoCh05G004900 vs. TrEMBL
Match: D7TX41_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0084g00140 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 7.7e-48
Identity = 106/173 (61.27%), Postives = 126/173 (72.83%), Query Frame = 1 

Query: 17  AAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPP 76
           + A    + AGVGLGYGIAIAVSILV ISTIML SYAC+R K++        RP      
Sbjct: 2   STATPPESAAGVGLGYGIAIAVSILVLISTIMLASYACVRVKASGGTRADHGRPGTNRES 61

Query: 77  PAAD----NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCI 136
            A D      VV++ GLDG  IESYPK+VLG+SRRLP PN GPCSICLS+Y+P ++VR I
Sbjct: 62  TAVDLSELAAVVVVAGLDGPAIESYPKMVLGQSRRLPRPNDGPCSICLSEYRPNETVRSI 121

Query: 137 PDCRHCFHSACVDEWLRMSATCPLCRNSP----APTPVATPLSEFAPLASNAR 182
           P+C HCFH+ C+DEWLRMSATCP+CR+SP    APTP+ATPLSE  PLA +AR
Sbjct: 122 PECNHCFHADCIDEWLRMSATCPICRSSPAVSAAPTPLATPLSEVVPLAFHAR 174

[Close]
BLAST of CmoCh05G004900 vs. TrEMBL
Match: A0A078BZZ9_BRANA (BnaA10g23510D protein OS=Brassica napus GN=BnaA10g23510D PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.0e-47
Identity = 102/160 (63.75%), Postives = 119/160 (74.38%), Query Frame = 1 

Query: 22  SPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPPPAADN 81
           +P   GVGLGYGIAIAVSIL+ ISTIML SY CIR+KS    PR        L  PAA+ 
Sbjct: 5   NPPATGVGLGYGIAIAVSILILISTIMLASYICIRSKSA---PRDGATSEGVLDSPAAE- 64

Query: 82  VVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHS 141
              + +GLD  +IESYP++VLGESRRLP PN+GPCSICL DY+  D VRCIP+C HCFH+
Sbjct: 65  ---VKLGLDRPVIESYPRIVLGESRRLPRPNNGPCSICLCDYEARDPVRCIPECNHCFHA 124

Query: 142 ACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 182
            CVDEWLR SATCPLCRNSPAP+ +ATPLS+  P+A   R
Sbjct: 125 DCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPVAFQIR 157

[Close]
BLAST of CmoCh05G004900 vs. TrEMBL
Match: A0A078EDX7_BRANA (BnaC09g48210D protein OS=Brassica napus GN=BnaC09g48210D PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.7e-47
Identity = 102/160 (63.75%), Postives = 118/160 (73.75%), Query Frame = 1 

Query: 22  SPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPPPAADN 81
           +P   GVGLGYGIAIAVSIL+ ISTIML SY CIR KS    PR        L  PAA+ 
Sbjct: 5   NPPATGVGLGYGIAIAVSILILISTIMLASYICIRLKSA---PRDGATSEGVLDSPAAE- 64

Query: 82  VVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHS 141
              + +GLD  +IESYP++VLGESRRLP PN+GPCSICL DY+  D VRCIP+C HCFH+
Sbjct: 65  ---VKLGLDRPVIESYPRIVLGESRRLPRPNNGPCSICLCDYEARDPVRCIPECNHCFHA 124

Query: 142 ACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 182
            CVDEWLR SATCPLCRNSPAP+ +ATPLS+  P+A   R
Sbjct: 125 DCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPVAFQIR 157

[Close]
BLAST of CmoCh05G004900 vs. TAIR10
Match: AT5G07040.1 (AT5G07040.1 RING/U-box superfamily protein)

HSP 1 Score: 196.4 bits (498), Expect = 1.5e-50
Identity = 103/160 (64.38%), Postives = 120/160 (75.00%), Query Frame = 1 

Query: 22  SPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPPPAADN 81
           SP  +GVGLGYGIAIAVSILV IS IML SY CIR+KST  R          LP PAA+ 
Sbjct: 5   SPPASGVGLGYGIAIAVSILVLISFIMLASYICIRSKSTG-RDEATSDVVLDLPSPAAE- 64

Query: 82  VVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHS 141
              + +GLD  +IESYP++VLG+SRRLP PN+GPCSICL DY+  + VRCIP+C HCFH+
Sbjct: 65  ---VKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHT 124

Query: 142 ACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 182
            CVDEWLR SATCPLCRNSPAP+ +ATPLS+  PLA   R
Sbjct: 125 DCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

[Close]
BLAST of CmoCh05G004900 vs. TAIR10
Match: AT5G06490.1 (AT5G06490.1 RING/U-box superfamily protein)

HSP 1 Score: 125.2 bits (313), Expect = 4.2e-29
Identity = 69/169 (40.83%), Postives = 96/169 (56.80%), Query Frame = 1 

Query: 29  GLGYGIAIAVSILVFISTIMLVSYACIRAK-----STRPRPRPRPRPSAPLPPPA----- 88
           GL YGI +++ IL+ I+TI L SY C R+      +T PR R R R S    PP      
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFD 81

Query: 89  -----ADNVVVLMVGLDGSIIESYPKLVLGESR-----RLPAPNHGPCSICLSDYQPYDS 148
                +D VVV ++GL   +I+ +PKL   E+R     +  +     CSICL+DY+  D 
Sbjct: 82  FEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDM 141

Query: 149 VRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLA 178
           +R +PDC H FH  CVD WLR+  TCP+CR SP P+P  TP+++  P +
Sbjct: 142 IRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]
BLAST of CmoCh05G004900 vs. TAIR10
Match: AT2G35910.1 (AT2G35910.1 RING/U-box superfamily protein)

HSP 1 Score: 115.2 bits (287), Expect = 4.3e-26
Identity = 62/156 (39.74%), Postives = 93/156 (59.62%), Query Frame = 1 

Query: 29  GLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPPPAADNVVVLMVG 88
           G  YGI +++ +L+ I+TI L SY C R + +   P    + S  +       ++ ++ G
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSS-PSQTNQDSTRIHHHHHHVIIDVVPG 122

Query: 89  LDGSIIESYPKLVLGESRRLPAPNHGP-----CSICLSDYQPYDSVRCIPDCRHCFHSAC 148
           LD   I+SYPK++  E++       GP     C+ICL DY+    +R +PDC H FH  C
Sbjct: 123 LDEDTIQSYPKILYSEAK-------GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKC 182

Query: 149 VDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASN 180
           +D WLR++ TCP+CR SP PTP++TPL+E  PLAS+
Sbjct: 183 IDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASS 210

[Close]
BLAST of CmoCh05G004900 vs. TAIR10
Match: AT2G46495.1 (AT2G46495.1 RING/U-box superfamily protein)

HSP 1 Score: 114.8 bits (286), Expect = 5.7e-26
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 1 

Query: 81  NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHG-PCSICLSDYQPYDSVRCIPDCRHCF 140
           N V++  GLD SIIESY K  LGESRRLP  N    C ICLS+Y   ++VRCIP+C HCF
Sbjct: 284 NEVIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCF 343

Query: 141 HSACVDEWLRMSATCPLCRNSPAP 164
           HS C+D WL++  +CPLCRNSP+P
Sbjct: 344 HSECIDVWLKIHGSCPLCRNSPSP 367

[Close]
BLAST of CmoCh05G004900 vs. TAIR10
Match: AT1G28040.1 (AT1G28040.1 RING/U-box superfamily protein)

HSP 1 Score: 107.8 bits (268), Expect = 6.9e-24
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 1 

Query: 53  ACIRAKSTRPRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPN 112
           A I A++T  +PR                 VV+  GLD S IESY K+ LGESRRLP  N
Sbjct: 206 AAITARNTTQQPRG----------------VVVTTGLDQSTIESYKKVELGESRRLPGTN 265

Query: 113 HGPCSICLSDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNS 161
              C ICLS+Y   ++VRC+P+C HCFH  C+DEWL++ ++CP+CRNS
Sbjct: 266 GIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCRNS 297

[Close]
BLAST of CmoCh05G004900 vs. NCBI nr
Match: gi|659089237|ref|XP_008445399.1| (PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis melo])

HSP 1 Score: 266.5 bits (680), Expect = 3.3e-68
Identity = 143/169 (84.62%), Postives = 150/169 (88.76%), Query Frame = 1 

Query: 15  SSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKS-TRPRPRPRPRPSAP 74
           SSA   +SPA  GVGLGYGIAIAVSILVFIST+ML+SYACIR KS TRPRPRP    S P
Sbjct: 2   SSAHPPSSPA-TGVGLGYGIAIAVSILVFISTVMLISYACIRVKSSTRPRPRPSAN-SLP 61

Query: 75  LPPPAA-DNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCI 134
            PP A  DNVVVLMVGLDGSIIESYPKLVLGESRRLP PN+GPCSICLSDY+P+DSVRCI
Sbjct: 62  SPPAATVDNVVVLMVGLDGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCI 121

Query: 135 PDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 182
           PDCRHCFHS CVDEWLRMSATCPLCRNSPAPTPVATPLSEF PLAS+AR
Sbjct: 122 PDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASHAR 168

[Close]
BLAST of CmoCh05G004900 vs. NCBI nr
Match: gi|449458135|ref|XP_004146803.1| (PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 4.9e-64
Identity = 132/167 (79.04%), Postives = 142/167 (85.03%), Query Frame = 1 

Query: 15  SSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPL 74
           SSA   +SPA  G+GLGYGIAIAVSILVFIST+ML+SYACIR KS   RP      S P 
Sbjct: 2   SSAHPPSSPA-TGLGLGYGIAIAVSILVFISTVMLISYACIRVKSATTRPSA----SLPS 61

Query: 75  PPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPD 134
           PP   DNVVVLMVGL GSIIESYPKLVLGESRRLP PN+GPCSICLSDY+P+DSVRCIPD
Sbjct: 62  PPTPVDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPD 121

Query: 135 CRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 182
           CRHCFHS CVD+WLRMSATCPLCRNSPAPTP+ATPLSE  PLAS+AR
Sbjct: 122 CRHCFHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 163

[Close]
BLAST of CmoCh05G004900 vs. NCBI nr
Match: gi|1009118788|ref|XP_015876036.1| (PREDICTED: putative RING-H2 finger protein ATL69 [Ziziphus jujuba])

HSP 1 Score: 208.8 bits (530), Expect = 8.2e-51
Identity = 111/171 (64.91%), Postives = 130/171 (76.02%), Query Frame = 1 

Query: 15  SSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPL 74
           S+A A    +  GVGLGYGIAIAVSILV ISTIML SYAC+R K++    R R  P+   
Sbjct: 2   STAGADPPFSPTGVGLGYGIAIAVSILVLISTIMLASYACVRVKASGAARRNR-LPTTTT 61

Query: 75  PPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPD 134
               +   VVL++GLDGSIIESYPK+V+GESRRLP PN GPCSICLS+YQP DS+RCIP+
Sbjct: 62  TTITSSEPVVLVMGLDGSIIESYPKIVVGESRRLPKPNEGPCSICLSEYQPNDSLRCIPE 121

Query: 135 CRHCFHSACVDEWLRMSATCPLCRNSPAP----TPVATPLSEFAPLASNAR 182
           C HCFHS C+DEWLRM+ATCP+CRNSPAP    TP+ATP SE  PLA + R
Sbjct: 122 CNHCFHSDCIDEWLRMTATCPMCRNSPAPSSANTPLATPQSELVPLAFHVR 171

[Close]
BLAST of CmoCh05G004900 vs. NCBI nr
Match: gi|225464029|ref|XP_002266804.1| (PREDICTED: putative RING-H2 finger protein ATL69 [Vitis vinifera])

HSP 1 Score: 198.4 bits (503), Expect = 1.1e-47
Identity = 106/173 (61.27%), Postives = 126/173 (72.83%), Query Frame = 1 

Query: 17  AAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPP 76
           + A    + AGVGLGYGIAIAVSILV ISTIML SYAC+R K++        RP      
Sbjct: 2   STATPPESAAGVGLGYGIAIAVSILVLISTIMLASYACVRVKASGGTRADHGRPGTNRES 61

Query: 77  PAAD----NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCI 136
            A D      VV++ GLDG  IESYPK+VLG+SRRLP PN GPCSICLS+Y+P ++VR I
Sbjct: 62  TAVDLSELAAVVVVAGLDGPAIESYPKMVLGQSRRLPRPNDGPCSICLSEYRPNETVRSI 121

Query: 137 PDCRHCFHSACVDEWLRMSATCPLCRNSP----APTPVATPLSEFAPLASNAR 182
           P+C HCFH+ C+DEWLRMSATCP+CR+SP    APTP+ATPLSE  PLA +AR
Sbjct: 122 PECNHCFHADCIDEWLRMSATCPICRSSPAVSAAPTPLATPLSEVVPLAFHAR 174

[Close]
BLAST of CmoCh05G004900 vs. NCBI nr
Match: gi|565463964|ref|XP_006289981.1| (hypothetical protein CARUB_v10003611mg [Capsella rubella])

HSP 1 Score: 198.4 bits (503), Expect = 1.1e-47
Identity = 105/161 (65.22%), Postives = 120/161 (74.53%), Query Frame = 1 

Query: 22  SPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSA-PLPPPAAD 81
           SP  +GVGLGYGIAIAVSILV IS IML SY CIR+KST      R    A   P PAA+
Sbjct: 5   SPPPSGVGLGYGIAIAVSILVLISFIMLASYICIRSKSTGRGDEARTSDGALDSPSPAAE 64

Query: 82  NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFH 141
               + +GLD  +IESYPK+VLG+SRRLP PN GPCSICL DY+  + VRCIP+C HCFH
Sbjct: 65  ----VKLGLDRPVIESYPKIVLGDSRRLPRPNSGPCSICLCDYEAREPVRCIPECNHCFH 124

Query: 142 SACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 182
           + CVDEWLR SATCPLCRNSPAP+ +ATPLS F+PLA   R
Sbjct: 125 TDCVDEWLRTSATCPLCRNSPAPSRLATPLSHFSPLAFQIR 161

The following BLAST results are available for this feature:
BLAST of CmoCh05G004900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL69_ARATH2.6e-4964.38Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana GN=ATL69 PE=3 SV=1[more]
ATL71_ARATH7.4e-2840.83Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana GN=ATL71 PE=3 SV=1[more]
ATL70_ARATH7.7e-2539.74RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2 SV=1[more]
AT21A_ARATH1.0e-2460.71Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV... [more]
ATL20_ARATH1.2e-2248.15RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2 SV=2[more]
BLAST of CmoCh05G004900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFY2_CUCSA3.4e-6479.04Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401350 PE=4 SV=1[more]
R0H0Y3_9BRAS7.7e-4865.22Uncharacterized protein OS=Capsella rubella GN=CARUB_v10003611mg PE=4 SV=1[more]
D7TX41_VITVI7.7e-4861.27Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0084g00140 PE=4 SV=... [more]
A0A078BZZ9_BRANA1.0e-4763.75BnaA10g23510D protein OS=Brassica napus GN=BnaA10g23510D PE=4 SV=1[more]
A0A078EDX7_BRANA1.7e-4763.75BnaC09g48210D protein OS=Brassica napus GN=BnaC09g48210D PE=4 SV=1[more]
BLAST of CmoCh05G004900 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G07040.11.5e-5064.38 RING/U-box superfamily protein[more]
AT5G06490.14.2e-2940.83 RING/U-box superfamily protein[more]
AT2G35910.14.3e-2639.74 RING/U-box superfamily protein[more]
AT2G46495.15.7e-2660.71 RING/U-box superfamily protein[more]
AT1G28040.16.9e-2448.15 RING/U-box superfamily protein[more]
BLAST of CmoCh05G004900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659089237|ref|XP_008445399.1|3.3e-6884.62PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis melo][more]
gi|449458135|ref|XP_004146803.1|4.9e-6479.04PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis sativus][more]
gi|1009118788|ref|XP_015876036.1|8.2e-5164.91PREDICTED: putative RING-H2 finger protein ATL69 [Ziziphus jujuba][more]
gi|225464029|ref|XP_002266804.1|1.1e-4761.27PREDICTED: putative RING-H2 finger protein ATL69 [Vitis vinifera][more]
gi|565463964|ref|XP_006289981.1|1.1e-4765.22hypothetical protein CARUB_v10003611mg [Capsella rubella][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G004900.1CmoCh05G004900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 116..158
score: 1.5
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 116..157
score: 3.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 116..158
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 115..159
score: 2.8
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 1..7
score: 3.6E-77coord: 25..179
score: 3.6
NoneNo IPR availablePANTHERPTHR14155:SF157RING-H2 FINGER PROTEIN ATL69-RELATEDcoord: 1..7
score: 3.6E-77coord: 25..179
score: 3.6
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 115..162
score: 8.64