Lsi08G009260 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G009260
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRing finger protein, putative
Locationchr08 : 17650994 .. 17651491 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCGCCCATTCCCCTTCCACCGCCGCCACCCCTGCCGGCGTCGGCCTCGGCTACGGCATTGCCATCGCTGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCGTCTCCTACGCTTGCATTCACGTCAAATCCTCCCGCCCTCGCTCTAGATCCTCTACCTCTCTCCCTTCTCCCGCTGCCGACAATGTGGTGGTTCTCATGGTCGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTAGTCCTCGGAGAGAGTCGCCGTCTTCCCGCCCCTAATCACGGCCCTTGCTCCATTTGCCTCTCCGATTACAAACCCTACGATTCTCTCCGCTGCATTCCCGATTGTCGCCATTGTTTTCACTCCGATTGCGTCGATGAATGGCTACGTGTGAGCGCTACTTGTCCTTTGTGTCGAAATTCCCCTGCTCCGACCCCTGTTGCTACTCCTCTCTCTGAGTTTGTGCCTCTGGCTTCCAATGCCAGGTGA

mRNA sequence

ATGTCCTCCGCCCATTCCCCTTCCACCGCCGCCACCCCTGCCGGCGTCGGCCTCGGCTACGGCATTGCCATCGCTGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCGTCTCCTACGCTTGCATTCACGTCAAATCCTCCCGCCCTCGCTCTAGATCCTCTACCTCTCTCCCTTCTCCCGCTGCCGACAATGTGGTGGTTCTCATGGTCGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTAGTCCTCGGAGAGAGTCGCCGTCTTCCCGCCCCTAATCACGGCCCTTGCTCCATTTGCCTCTCCGATTACAAACCCTACGATTCTCTCCGCTGCATTCCCGATTGTCGCCATTGTTTTCACTCCGATTGCGTCGATGAATGGCTACGTGTGAGCGCTACTTGTCCTTTGTGTCGAAATTCCCCTGCTCCGACCCCTGTTGCTACTCCTCTCTCTGAGTTTGTGCCTCTGGCTTCCAATGCCAGGTGA

Coding sequence (CDS)

ATGTCCTCCGCCCATTCCCCTTCCACCGCCGCCACCCCTGCCGGCGTCGGCCTCGGCTACGGCATTGCCATCGCTGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCGTCTCCTACGCTTGCATTCACGTCAAATCCTCCCGCCCTCGCTCTAGATCCTCTACCTCTCTCCCTTCTCCCGCTGCCGACAATGTGGTGGTTCTCATGGTCGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTAGTCCTCGGAGAGAGTCGCCGTCTTCCCGCCCCTAATCACGGCCCTTGCTCCATTTGCCTCTCCGATTACAAACCCTACGATTCTCTCCGCTGCATTCCCGATTGTCGCCATTGTTTTCACTCCGATTGCGTCGATGAATGGCTACGTGTGAGCGCTACTTGTCCTTTGTGTCGAAATTCCCCTGCTCCGACCCCTGTTGCTACTCCTCTCTCTGAGTTTGTGCCTCTGGCTTCCAATGCCAGGTGA

Protein sequence

MSSAHSPSTAATPAGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRSSTSLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR
Homology
[Close]
BLAST of Lsi08G009260 vs. Swiss-Prot
Match: ATL69_ARATH (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana GN=ATL69 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.3e-50
Identity = 101/155 (65.16%), Postives = 120/155 (77.42%), Query Frame = 1 

Query: 14  AGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRSST---SLPSPAADNVVVLM 73
           +GVGLGYGIAIAVSILV IS IML SY CI  KS+     +S     LPSPAA+    + 
Sbjct: 9   SGVGLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAE----VK 68

Query: 74  VGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDE 133
           +GLD  +IESYP++VLG+SRRLP PN+GPCSICL DY+  + +RCIP+C HCFH+DCVDE
Sbjct: 69  LGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDE 128

Query: 134 WLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           WLR SATCPLCRNSPAP+ +ATPLS+ VPLA   R
Sbjct: 129 WLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

[Close]
BLAST of Lsi08G009260 vs. Swiss-Prot
Match: ATL70_ARATH (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-27
Identity = 66/155 (42.58%), Postives = 95/155 (61.29%), Query Frame = 1 

Query: 17  GLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRS---STSLPSPAADNVVVLMVGL 76
           G  YGI +++ +L+ I+TI L SY C   + S   S++   ST +       ++ ++ GL
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIIDVVPGL 122

Query: 77  DGSIIESYPKLVLGESRRLPAPNHGP-----CSICLSDYKPYDSLRCIPDCRHCFHSDCV 136
           D   I+SYPK++  E++       GP     C+ICL DYK    LR +PDC H FH  C+
Sbjct: 123 DEDTIQSYPKILYSEAK-------GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCI 182

Query: 137 DEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASN 164
           D WLR++ TCP+CR SP PTP++TPL+E VPLAS+
Sbjct: 183 DTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASS 210

[Close]
BLAST of Lsi08G009260 vs. Swiss-Prot
Match: ATL71_ARATH (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana GN=ATL71 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-27
Identity = 69/169 (40.83%), Postives = 99/169 (58.58%), Query Frame = 1 

Query: 17  GLGYGIAIAVSILVFISTIMLVSYACI--HVKSS---RPRSR-----SSTSLP------- 76
           GL YGI +++ IL+ I+TI L SY C   H+ +S    PR+R     S+ +LP       
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFD 81

Query: 77  --SPAADNVVVLMVGLDGSIIESYPKLVLGESR-----RLPAPNHGPCSICLSDYKPYDS 136
                +D VVV ++GL   +I+ +PKL   E+R     +  +     CSICL+DYK  D 
Sbjct: 82  FEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDM 141

Query: 137 LRCIPDCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLA 162
           +R +PDC H FH +CVD WLR+  TCP+CR SP P+P  TP+++ VP +
Sbjct: 142 IRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]
BLAST of Lsi08G009260 vs. Swiss-Prot
Match: AT21A_ARATH (Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.4e-25
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 1 

Query: 65  NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHG-PCSICLSDYKPYDSLRCIPDCRHCF 124
           N V++  GLD SIIESY K  LGESRRLP  N    C ICLS+Y   +++RCIP+C HCF
Sbjct: 284 NEVIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCF 343

Query: 125 HSDCVDEWLRVSATCPLCRNSPAP 148
           HS+C+D WL++  +CPLCRNSP+P
Sbjct: 344 HSECIDVWLKIHGSCPLCRNSPSP 367

[Close]
BLAST of Lsi08G009260 vs. Swiss-Prot
Match: ATL67_ARATH (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.9e-24
Identity = 68/174 (39.08%), Postives = 96/174 (55.17%), Query Frame = 1 

Query: 16  VGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRSSTS-------LPS----PAAD 75
           +G GY IAIA+  LV +ST++L SY C      R  +  ST        LP        D
Sbjct: 33  LGFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEED 92

Query: 76  NVVV----LMVGLDGSIIESYPKLVLGESRRLPAPN------HGPCSICLSDYKPYDSLR 135
           N  +    ++VGLD ++I SYPK    +     + +         CSICL +YK  + LR
Sbjct: 93  NEDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLR 152

Query: 136 CIPDCRHCFHSDCVDEWLRVSATCPLCRNSPAP----TPVATPLSEFVPLASNA 165
            +P+C+H FH  C+D WL+++ +CP+CRNSP P    TP++TPLSE VPL+  A
Sbjct: 153 MMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLSQYA 206

[Close]
BLAST of Lsi08G009260 vs. TrEMBL
Match: A0A0A0KFY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401350 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 7.2e-69
Identity = 137/167 (82.04%), Postives = 150/167 (89.82%), Query Frame = 1 

Query: 1   MSSAHSPSTAATPAGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRSSTSLPS 60
           MSSAH PS+ AT  G+GLGYGIAIAVSILVFIST+ML+SYACI VKS+   +R S SLPS
Sbjct: 1   MSSAHPPSSPAT--GLGLGYGIAIAVSILVFISTVMLISYACIRVKSA--TTRPSASLPS 60

Query: 61  P--AADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPD 120
           P    DNVVVLMVGL GSIIESYPKLVLGESRRLP PN+GPCSICLSDYKP+DS+RCIPD
Sbjct: 61  PPTPVDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPD 120

Query: 121 CRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           CRHCFHSDCVD+WLR+SATCPLCRNSPAPTP+ATPLSE VPLAS+AR
Sbjct: 121 CRHCFHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 163

[Close]
BLAST of Lsi08G009260 vs. TrEMBL
Match: D7TX41_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0084g00140 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.0e-51
Identity = 112/177 (63.28%), Postives = 134/177 (75.71%), Query Frame = 1 

Query: 1   MSSAHSPSTAATPAGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSS----RPRSRSST 60
           MS+A  P +AA   GVGLGYGIAIAVSILV ISTIML SYAC+ VK+S        R  T
Sbjct: 1   MSTATPPESAA---GVGLGYGIAIAVSILVLISTIMLASYACVRVKASGGTRADHGRPGT 60

Query: 61  SLPSPAAD----NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDS 120
           +  S A D      VV++ GLDG  IESYPK+VLG+SRRLP PN GPCSICLS+Y+P ++
Sbjct: 61  NRESTAVDLSELAAVVVVAGLDGPAIESYPKMVLGQSRRLPRPNDGPCSICLSEYRPNET 120

Query: 121 LRCIPDCRHCFHSDCVDEWLRVSATCPLCRNSP----APTPVATPLSEFVPLASNAR 166
           +R IP+C HCFH+DC+DEWLR+SATCP+CR+SP    APTP+ATPLSE VPLA +AR
Sbjct: 121 VRSIPECNHCFHADCIDEWLRMSATCPICRSSPAVSAAPTPLATPLSEVVPLAFHAR 174

[Close]
BLAST of Lsi08G009260 vs. TrEMBL
Match: V4SXV0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003203mg PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.2e-51
Identity = 114/181 (62.98%), Postives = 136/181 (75.14%), Query Frame = 1 

Query: 1   MSSAHSPSTAATPA----GVGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRS---- 60
           MS+A+ P  A+T A    GVGLGYGIAIAVSILV ISTIML SYACI VK++  R     
Sbjct: 1   MSTANPPVVASTAATTTTGVGLGYGIAIAVSILVLISTIMLASYACIRVKANANRGGGSG 60

Query: 61  --RSSTSLPSPAADNVV-----VLMVGLDGSIIESYPKLVLGESRRLPAPN-HGPCSICL 120
              SS S P+P  D V      VL++GLDG++I ++PK++LGES R+P PN +GPCSICL
Sbjct: 61  GGSSSNSNPTPNFDAVDSGLAGVLVLGLDGTVINTFPKIILGESMRMPGPNDYGPCSICL 120

Query: 121 SDYKPYDSLRCIPDCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNA 166
            DYKP DS+RCIPDC HCFH+DCVDEWLR+SATCPLCR+SP     ATPL+E VPLAS+A
Sbjct: 121 CDYKPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSP-----ATPLAEVVPLASHA 176

[Close]
BLAST of Lsi08G009260 vs. TrEMBL
Match: A0A067L8Z0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24568 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.8e-51
Identity = 112/175 (64.00%), Postives = 127/175 (72.57%), Query Frame = 1 

Query: 1   MSSAHSPSTAATPAGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRSSTSLPS 60
           MS+A  P +A    GVGLGYGIAIAVSILV ISTIML SYAC+ VK S  R RS+     
Sbjct: 1   MSTADPPVSAT---GVGLGYGIAIAVSILVLISTIMLASYACVRVKGSL-RDRSNNGDND 60

Query: 61  PAAD----------NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPY 120
              D             +L++GLDG  IESYPK+VLGESRRLP PN+GPCSICLSDYKP 
Sbjct: 61  DDTDPYRHNRQFMTGEPMLVIGLDGPQIESYPKMVLGESRRLPKPNNGPCSICLSDYKPK 120

Query: 121 DSLRCIPDCRHCFHSDCVDEWLRVSATCPLCRNSPAP----TPVATPLSEFVPLA 162
           D+LRCIP C HCFH+DCVDEWL++SATCPLCRNSP P    TP+ATPLSE  PL+
Sbjct: 121 DTLRCIPACHHCFHADCVDEWLKMSATCPLCRNSPTPSAVSTPIATPLSELAPLS 171

[Close]
BLAST of Lsi08G009260 vs. TrEMBL
Match: A0A0D2UIN7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G215700 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.4e-50
Identity = 106/181 (58.56%), Postives = 128/181 (70.72%), Query Frame = 1 

Query: 1   MSSAHSPSTAATPAGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRS------ 60
           MS+A  P +     GVGLGYGIAIAVSILV ISTIML SYAC+ VK+S   +RS      
Sbjct: 1   MSTADPPISTT---GVGLGYGIAIAVSILVLISTIMLASYACVRVKASGSGNRSRRNSNG 60

Query: 61  ------STSLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYK 120
                 S  +    + +V  ++VGLDG +IESYPK+++GESRRLP PN+GPC ICL++Y+
Sbjct: 61  GNSNGTSRGITEDDSMDVATVVVGLDGPVIESYPKIIVGESRRLPKPNNGPCCICLTEYQ 120

Query: 121 PYDSLRCIPDCRHCFHSDCVDEWLRVSATCPLCRNSPA----PTPVATPLSEFVPLASNA 166
           P D +RCIPDC HCFH DC+DEWLR++ TCPLCRNSPA    PTP  TPLS  VPLA N 
Sbjct: 121 PKDQIRCIPDCEHCFHVDCIDEWLRMNGTCPLCRNSPAPSQGPTPSTTPLSALVPLAFNG 178

[Close]
BLAST of Lsi08G009260 vs. TAIR10
Match: AT5G07040.1 (AT5G07040.1 RING/U-box superfamily protein)

HSP 1 Score: 200.7 bits (509), Expect = 7.1e-52
Identity = 101/155 (65.16%), Postives = 120/155 (77.42%), Query Frame = 1 

Query: 14  AGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRSST---SLPSPAADNVVVLM 73
           +GVGLGYGIAIAVSILV IS IML SY CI  KS+     +S     LPSPAA+    + 
Sbjct: 9   SGVGLGYGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAE----VK 68

Query: 74  VGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDE 133
           +GLD  +IESYP++VLG+SRRLP PN+GPCSICL DY+  + +RCIP+C HCFH+DCVDE
Sbjct: 69  LGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDE 128

Query: 134 WLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           WLR SATCPLCRNSPAP+ +ATPLS+ VPLA   R
Sbjct: 129 WLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQIR 159

[Close]
BLAST of Lsi08G009260 vs. TAIR10
Match: AT2G35910.1 (AT2G35910.1 RING/U-box superfamily protein)

HSP 1 Score: 124.4 bits (311), Expect = 6.5e-29
Identity = 66/155 (42.58%), Postives = 95/155 (61.29%), Query Frame = 1 

Query: 17  GLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRS---STSLPSPAADNVVVLMVGL 76
           G  YGI +++ +L+ I+TI L SY C   + S   S++   ST +       ++ ++ GL
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIIDVVPGL 122

Query: 77  DGSIIESYPKLVLGESRRLPAPNHGP-----CSICLSDYKPYDSLRCIPDCRHCFHSDCV 136
           D   I+SYPK++  E++       GP     C+ICL DYK    LR +PDC H FH  C+
Sbjct: 123 DEDTIQSYPKILYSEAK-------GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCI 182

Query: 137 DEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASN 164
           D WLR++ TCP+CR SP PTP++TPL+E VPLAS+
Sbjct: 183 DTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASS 210

[Close]
BLAST of Lsi08G009260 vs. TAIR10
Match: AT5G53110.1 (AT5G53110.1 RING/U-box superfamily protein)

HSP 1 Score: 124.0 bits (310), Expect = 8.5e-29
Identity = 60/133 (45.11%), Postives = 85/133 (63.91%), Query Frame = 1 

Query: 20  YGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRSSTSLPSPAADNVV-------VLMVG 79
           Y IA+   I   +    L  +    + S   R R    +P+P  +N         V+++G
Sbjct: 246 YAIAVGAGIPGALIVFGLFCFVYSKISSCIKRRRL---VPTPEINNAQAHYLHSSVIVMG 305

Query: 80  LDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDEWL 139
           LDG  IESYPK+VLGES+RLP  +   C+ICLS+Y+P ++LR IP C+HCFH+DC+DEWL
Sbjct: 306 LDGPTIESYPKIVLGESKRLPKVDDATCAICLSEYEPKETLRTIPQCQHCFHADCIDEWL 365

Query: 140 RVSATCPLCRNSP 146
           +++ TCP+CRNSP
Sbjct: 366 KLNGTCPVCRNSP 375

[Close]
BLAST of Lsi08G009260 vs. TAIR10
Match: AT5G06490.1 (AT5G06490.1 RING/U-box superfamily protein)

HSP 1 Score: 124.0 bits (310), Expect = 8.5e-29
Identity = 69/169 (40.83%), Postives = 99/169 (58.58%), Query Frame = 1 

Query: 17  GLGYGIAIAVSILVFISTIMLVSYACI--HVKSS---RPRSR-----SSTSLP------- 76
           GL YGI +++ IL+ I+TI L SY C   H+ +S    PR+R     S+ +LP       
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFD 81

Query: 77  --SPAADNVVVLMVGLDGSIIESYPKLVLGESR-----RLPAPNHGPCSICLSDYKPYDS 136
                +D VVV ++GL   +I+ +PKL   E+R     +  +     CSICL+DYK  D 
Sbjct: 82  FEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDM 141

Query: 137 LRCIPDCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLA 162
           +R +PDC H FH +CVD WLR+  TCP+CR SP P+P  TP+++ VP +
Sbjct: 142 IRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]
BLAST of Lsi08G009260 vs. TAIR10
Match: AT2G46495.1 (AT2G46495.1 RING/U-box superfamily protein)

HSP 1 Score: 115.5 bits (288), Expect = 3.0e-26
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 1 

Query: 65  NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHG-PCSICLSDYKPYDSLRCIPDCRHCF 124
           N V++  GLD SIIESY K  LGESRRLP  N    C ICLS+Y   +++RCIP+C HCF
Sbjct: 284 NEVIVTTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCF 343

Query: 125 HSDCVDEWLRVSATCPLCRNSPAP 148
           HS+C+D WL++  +CPLCRNSP+P
Sbjct: 344 HSECIDVWLKIHGSCPLCRNSPSP 367

[Close]
BLAST of Lsi08G009260 vs. NCBI nr
Match: gi|659089237|ref|XP_008445399.1| (PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis melo])

HSP 1 Score: 282.0 bits (720), Expect = 6.9e-73
Identity = 147/170 (86.47%), Postives = 156/170 (91.76%), Query Frame = 1 

Query: 1   MSSAHSPSTAATPAGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSS-RPRSR-SSTSL 60
           MSSAH PS+ AT  GVGLGYGIAIAVSILVFIST+ML+SYACI VKSS RPR R S+ SL
Sbjct: 1   MSSAHPPSSPAT--GVGLGYGIAIAVSILVFISTVMLISYACIRVKSSTRPRPRPSANSL 60

Query: 61  PSPAA---DNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRC 120
           PSP A   DNVVVLMVGLDGSIIESYPKLVLGESRRLP PN+GPCSICLSDYKP+DS+RC
Sbjct: 61  PSPPAATVDNVVVLMVGLDGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRC 120

Query: 121 IPDCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           IPDCRHCFHSDCVDEWLR+SATCPLCRNSPAPTPVATPLSEFVPLAS+AR
Sbjct: 121 IPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASHAR 168

[Close]
BLAST of Lsi08G009260 vs. NCBI nr
Match: gi|449458135|ref|XP_004146803.1| (PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 1.0e-68
Identity = 137/167 (82.04%), Postives = 150/167 (89.82%), Query Frame = 1 

Query: 1   MSSAHSPSTAATPAGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRSSTSLPS 60
           MSSAH PS+ AT  G+GLGYGIAIAVSILVFIST+ML+SYACI VKS+   +R S SLPS
Sbjct: 1   MSSAHPPSSPAT--GLGLGYGIAIAVSILVFISTVMLISYACIRVKSA--TTRPSASLPS 60

Query: 61  P--AADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPD 120
           P    DNVVVLMVGL GSIIESYPKLVLGESRRLP PN+GPCSICLSDYKP+DS+RCIPD
Sbjct: 61  PPTPVDNVVVLMVGLHGSIIESYPKLVLGESRRLPPPNNGPCSICLSDYKPHDSVRCIPD 120

Query: 121 CRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           CRHCFHSDCVD+WLR+SATCPLCRNSPAPTP+ATPLSE VPLAS+AR
Sbjct: 121 CRHCFHSDCVDQWLRMSATCPLCRNSPAPTPLATPLSELVPLASHAR 163

[Close]
BLAST of Lsi08G009260 vs. NCBI nr
Match: gi|1009118788|ref|XP_015876036.1| (PREDICTED: putative RING-H2 finger protein ATL69 [Ziziphus jujuba])

HSP 1 Score: 223.0 bits (567), Expect = 3.8e-55
Identity = 110/161 (68.32%), Postives = 131/161 (81.37%), Query Frame = 1 

Query: 12  TPAGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRSRS---STSLPSPAADNVVV 71
           +P GVGLGYGIAIAVSILV ISTIML SYAC+ VK+S    R+   +T+  +  +   VV
Sbjct: 11  SPTGVGLGYGIAIAVSILVLISTIMLASYACVRVKASGAARRNRLPTTTTTTITSSEPVV 70

Query: 72  LMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCV 131
           L++GLDGSIIESYPK+V+GESRRLP PN GPCSICLS+Y+P DSLRCIP+C HCFHSDC+
Sbjct: 71  LVMGLDGSIIESYPKIVVGESRRLPKPNEGPCSICLSEYQPNDSLRCIPECNHCFHSDCI 130

Query: 132 DEWLRVSATCPLCRNSPAP----TPVATPLSEFVPLASNAR 166
           DEWLR++ATCP+CRNSPAP    TP+ATP SE VPLA + R
Sbjct: 131 DEWLRMTATCPMCRNSPAPSSANTPLATPQSELVPLAFHVR 171

[Close]
BLAST of Lsi08G009260 vs. NCBI nr
Match: gi|985473110|ref|XP_015381687.1| (PREDICTED: putative RING-H2 finger protein ATL69 isoform X1 [Citrus sinensis])

HSP 1 Score: 211.1 bits (536), Expect = 1.5e-51
Identity = 115/178 (64.61%), Postives = 136/178 (76.40%), Query Frame = 1 

Query: 1   MSSAHSPSTAATPA----GVGLGYGIAIAVSILVFISTIMLVSYACIHVKSSRPRS---R 60
           MS+A+ P  A+T A    GVGLGYGIAIAVSILV ISTIML SYACI VK++  R     
Sbjct: 1   MSTANPPVVASTAATTTTGVGLGYGIAIAVSILVLISTIMLASYACIRVKANANRGGGGS 60

Query: 61  SSTSLPSPAADNVV-----VLMVGLDGSIIESYPKLVLGESRRLPAPN-HGPCSICLSDY 120
           SS S P+P  D V      VL++GLDG++I +YPK++LGES R+P PN +GPCSICL DY
Sbjct: 61  SSNSNPTPDFDAVDSGLAGVLVLGLDGTVINTYPKIILGESMRMPRPNDYGPCSICLCDY 120

Query: 121 KPYDSLRCIPDCRHCFHSDCVDEWLRVSATCPLCRNSPAPTPVATPLSEFVPLASNAR 166
           KP DS+RCIPDC HCFH+DCVDEWLR+SATCPLCR+SP     ATPL+E VPLAS+AR
Sbjct: 121 KPKDSVRCIPDCHHCFHADCVDEWLRMSATCPLCRSSP-----ATPLAEVVPLASHAR 173

[Close]
BLAST of Lsi08G009260 vs. NCBI nr
Match: gi|296087810|emb|CBI35066.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 211.1 bits (536), Expect = 1.5e-51
Identity = 112/177 (63.28%), Postives = 134/177 (75.71%), Query Frame = 1 

Query: 1   MSSAHSPSTAATPAGVGLGYGIAIAVSILVFISTIMLVSYACIHVKSS----RPRSRSST 60
           MS+A  P +AA   GVGLGYGIAIAVSILV ISTIML SYAC+ VK+S        R  T
Sbjct: 1   MSTATPPESAA---GVGLGYGIAIAVSILVLISTIMLASYACVRVKASGGTRADHGRPGT 60

Query: 61  SLPSPAAD----NVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDS 120
           +  S A D      VV++ GLDG  IESYPK+VLG+SRRLP PN GPCSICLS+Y+P ++
Sbjct: 61  NRESTAVDLSELAAVVVVAGLDGPAIESYPKMVLGQSRRLPRPNDGPCSICLSEYRPNET 120

Query: 121 LRCIPDCRHCFHSDCVDEWLRVSATCPLCRNSP----APTPVATPLSEFVPLASNAR 166
           +R IP+C HCFH+DC+DEWLR+SATCP+CR+SP    APTP+ATPLSE VPLA +AR
Sbjct: 121 VRSIPECNHCFHADCIDEWLRMSATCPICRSSPAVSAAPTPLATPLSEVVPLAFHAR 174

The following BLAST results are available for this feature:
BLAST of Lsi08G009260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL69_ARATH1.3e-5065.16Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana GN=ATL69 PE=3 SV=1[more]
ATL70_ARATH1.2e-2742.58RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2 SV=1[more]
ATL71_ARATH1.5e-2740.83Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana GN=ATL71 PE=3 SV=1[more]
AT21A_ARATH5.4e-2559.52Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV... [more]
ATL67_ARATH5.9e-2439.08RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2 SV=1[more]
BLAST of Lsi08G009260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFY2_CUCSA7.2e-6982.04Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401350 PE=4 SV=1[more]
D7TX41_VITVI1.0e-5163.28Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0084g00140 PE=4 SV=... [more]
V4SXV0_9ROSI5.2e-5162.98Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003203mg PE=4 SV=1[more]
A0A067L8Z0_JATCU8.8e-5164.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24568 PE=4 SV=1[more]
A0A0D2UIN7_GOSRA3.4e-5058.56Uncharacterized protein OS=Gossypium raimondii GN=B456_010G215700 PE=4 SV=1[more]
BLAST of Lsi08G009260 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G07040.17.1e-5265.16 RING/U-box superfamily protein[more]
AT2G35910.16.5e-2942.58 RING/U-box superfamily protein[more]
AT5G53110.18.5e-2945.11 RING/U-box superfamily protein[more]
AT5G06490.18.5e-2940.83 RING/U-box superfamily protein[more]
AT2G46495.13.0e-2659.52 RING/U-box superfamily protein[more]
BLAST of Lsi08G009260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659089237|ref|XP_008445399.1|6.9e-7386.47PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis melo][more]
gi|449458135|ref|XP_004146803.1|1.0e-6882.04PREDICTED: putative RING-H2 finger protein ATL69 [Cucumis sativus][more]
gi|1009118788|ref|XP_015876036.1|3.8e-5568.32PREDICTED: putative RING-H2 finger protein ATL69 [Ziziphus jujuba][more]
gi|985473110|ref|XP_015381687.1|1.5e-5164.61PREDICTED: putative RING-H2 finger protein ATL69 isoform X1 [Citrus sinensis][more]
gi|296087810|emb|CBI35066.3|1.5e-5163.28unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0008150 biological_process
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G009260.1Lsi08G009260.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 100..142
score: 1.6
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 100..141
score: 6.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 100..142
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 99..143
score: 2.7
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 7..163
score: 2.6
NoneNo IPR availablePANTHERPTHR14155:SF157RING-H2 FINGER PROTEIN ATL69-RELATEDcoord: 7..163
score: 2.6
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 99..147
score: 3.61