Csa6G134380 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAATTTCGTTTACGAGGGAAGGACAAGGTGTATTTGTTGTGTACTCCGCCGGTAAGAAACTAAAAACACTAACACAAACGCGAACGAGTGAAAACAGCCATAGAAATGGACGGAGAACTGCCGCCGGCATCGGCACCGGCTCCGGCTCCGGCTCCACTGTCCATCCATCCTGCCGTAACACCGCTATCATTCTTACTCGGAACATGGAGAGGCAAAGGCGAAGGTGGATTCCCCACCATTAATTCCTTCTCTTACGGCGAGGAACTTCACTTCTCCCATTCTGGCAAGGTAACCGTCAACTCCCTGTTCTTCGTCTCTATTCATTATCGTCGTTGATATCATCTTAATATAATTAAAATCGTCCCACTTCACTCGATTGGATTTTGCTTATTTAGTCTAATCGGTTATCTTCCTTGTTTGGGGATTTTTTAATACGATGATGATGGGAGAAGCCAGTGATTTCCTACAGTCAAAAGACATGGAAACTCGATTCTAAAGAGCCAATGCATGCTGAGAGTGGCTATTGGCGTCCCAAGCCCGATGGTACCATTGAGGTAGTCATCGCTCAAAGTACTGGTCTCGTTGAAGTTCAGGTCAACCATCTCTATCTCTCCTTCTTGTGTGGTTTACTGTTACATTCAAATTCATCGGCCGGAAGAGATTTTTTGTTGAATATAGACGTGCTTGTGCTTTTCGATTTTGATTTAGAGAAGTAATGATCGAAACAAACGGGTTCTTTGAGATGATATAAAAAGGCTTTATACTCTGTGAGCTCTAACAATATAATCAATCAGGTCCTGTCTGCTGAAACAAAACCTCCCTTTTGCCCTCACTTGGCCCTGTCTTTCCCGCCAAAACGAACGGCCATCTTTTCTAACCGTTGAAATCTCAGTCGCCATCTTTGAAATTGCAACGATTTGATTTCTTCAATCTCGACTTACTCCATGGCCCTAAAGCTCAGATTCTGAAACTACACTGCCACTATCAACTGTATCGTCAATTGCTATGTCAGATTCAGCAAGAGTTGTAGCCGCACATCAACTGTTCGATGAAATGCCCAACATAAATGTTGTGTCACGGATCTCACTCATGGCAGGTTATGTTGAGATTGTGGCTGGTATTGTTCATTCACAGTTCAGGCGGTGTCGAGAAGTTCAATTGTTTTCGAAGACTCCACTTTTGCAGCTGCAACCGAGGCCTGTTTGAAAAGTTCCGTGCCTATGTTAAGATTTTTGGCTATGGAGCTAATGTTATGGTCTGTTCCTCTCGCTTCTTGATACGTATGGGAAGTGTGTAACGATGTTGAAGCTAGGAGAGTCTTCGATTCCATGTTGTGTAAGATTATTGTTTTGATTCCATGTCGTGTTCCAGTTGCAATCAACACAAGCTTCTTCTCGCATCGCCAGGCTTCAGCGCGATCTAGCCTCAAACGCAACCTTTTTCGCGTAACGTCTCTTCTACATAGCTAAAATAAACCTTTCAACAAAGCTTCTTCCTTTTCTGGATCTGGGTCCTACAAATCATGTACTAAAAACGTTGGTATTTCATTTGAAAGTGAGCTTTATGGATAGATTATATGGTTGAAGTGGATAGGTGTGAAATGAAATTAATCATCGTGAGTTGACCTAGTTTAGTTGCTCATTAAGGGACATGGGTGTGACATGGCTAGAGCTTTAGCGGGAATGAATTCAAATGTATGGCGGTCAACTATTTAGGATTTAATATTCTACGAGCTTCCCTGACACCTAAATTTTATAAGATTAGACTGGTTTTCACATAAGAGTAGTCGAGATATAGCCAAGGTACCTCAATCACTCATGGAGATGGAAAAAAAAGTGAAATGAAACAAAGCTCCTCAAATCCCTCCTCCATATGAATGTGTGAAACTTGATCAAACTACAAGTGCTATTTTGTCCGCCTTTTATCTGCGATCTTCTTGAGTTGATATTTTTAATTGTGGTATGGATCTAATAGCTTGTGATGTAGGTGCAGATTGCCTTTCTTTGCTGCATGCATACTCTTCACACAACCAGAATGGTGAAACTGATAAGAAGCGAAATAAGACGCATCATTACAAAATTATATGGAGGTTTTCTAAGTGGGGTTGAACTTAAAATAAATCAGCAGCAAGTTGGATGGTTAGATATGACTTTCAGATTAGGAAAGAAGAAAAATAGATTCATATTGCTGCTCACGTGAACTTTCACATTGCCATAAAAACTCTGGTTTCTATAGCCAATTTTTATTTGCTTGACATCGAAATTTTATAACCAGTACTATATTTGCATCATTATCATCAACTCCTGAATATTATTTTCAGTTTTCTACAACTTGCAACTAATGGAGACCTCTGTTTTACTTTTCATTTAATTTGATCCGATTTGTCTCTGTTCCAGAAAGGAACCTACAATGCAGAAGAGAAAGTGATAAAGCTTCAAAGCGAACTTGTGGGAAATGCTTCTAAGGTAACGATCACTATATCCGTCATTATTTCAAATACAGATATATCTTTTGTTCTGTACCTATTTCATTATTTATTTTTGGTTTTGAAAAATTAAGCCTATTTCCTCTCAATTTTTTACCAAGATTTTTATGTTTCTGGTATAAGAGTTGAATTTTCAAATTTTCCAGTTAAATTCAAAAAATAAAATCATGATTTTAAAAACTATTTTTTTTTCAGTTTTCCAAATTTGGAAGGTGGAAGGAGTGTTTACGGGCTTAATGATCAAAAACAAAAGATCAAATTGTTTATGAATGTGCGTGTTAAACCTGTGTAACCTAGGGTCAAGAAGTTAAAGCCTCTCTTTGGTAATATGAATTTACCCAAGCTTATGAGATCTTCACTTTATACTGTATTCTAATTCTTTTAAATCATAAACCCATGAACTAAATATCGCAATGGGAACTAAGTTTCTATATGTATTTGTTTATATTATACAATTCGAACCGACGTTCACACAAACCTAAATGTCCATCTTCTAGGCTTACTAAAATCACAAGCCAAGCGCCCCTGACTCCCTTGACGGATTTATGTGTTAGTTTTTATGACAAAAGATGCCTGAGAATAATGTGTCCGAGAATGAGATGTCTAAGAATCAAAGATAATTGAGTTTGATCGTACATGGCCACAAATTGTGTTTTTATTTAATTTATAGAATTACACATGAAAATCTTACATAGATGGATGCGAAGTGTATGCCAAAGTGTACAAATGAATTGGTTCTGTTAGAGGCGATAAATTAACCACAGAACATCTTATAAACGAGATAGATTATCATTGTCTGATGGAAAATACTGCTCGTCCCCCATTGTATGAGATCAATACAACAGGTGGGTAAGCTTTTCTTCTTTTATTTTCCTCGAAAGCTTGTTAATCAATAATTAGTTACACTCAGATCAACATACTAGATGTAAGGAACGACACTTAAGTTTAGCGAGCAGATTTATGTCAGACATTTAAACATTTGACACTTGTTAAACACATTTTGAACACATGTTAGTATAATGCATGTGTTAGATACTAGTCATACAAAGCCAATAATCGGTCTAACAATTAGATAAATCAAGTGTGACATGCATCAAACGATATTGCATAAAACTATTGACTTTAGTCAATATATGTTCTCTTGCTAAGTATATTCTTGATTTTTTAAAAATGACTTGTCACGTGAACTTAGCTCAAAAGTAATTGACGGAAGGTAGGTAATTGACGTAACCTTCCATCCTATAGTGGGAGGTTTAGTTTCTTATAATTGTTGTACTAAATAAAAAAACTTATCCTGTATTTGTATCTTGCATCTTGCATTGGTGTACTATTTACTGGCCTCTATTATTGGGACAGGTGAAAGAAATAAGCAGAGTGTTTAAATTGGTGGATGGAGAGCTTTCCTACGTGGTTCAGATGGCTACTACCTTAACCAGTCTTCAACCACACTTAAAAGCCTTGCTCACTAAAGTTTGACGCAATAAAATAAGGTTAAGTCATAAAAAAATTCCTTCCAACTCTTTTATTTATTTTAAAATTACCCTTAATACTTTCAAAAGTTTGCAACAGTATCCTTGGATTTTCATGAAGGTTTCAAAAATACTGTTGGAGCAGAAATTCTTTACCATTCTGAGATATGAAATAATGTAGGGTGGGTAGGTGACATGGAGCGAAAATTTGAAGCACTGCATTGTTAGGTCATAATCATGCAATTCTAAATCCTGATTTTCTGTTTGAAACATTTATGAGATTTTAGGGAAATATTGTAACTTTTTTGAAAGTATTATGTAGTTTTGAAACAAATAGAAAAGTTTAAGAGATTTATAATAATTTGTCAAAAAAGAGAACAATGATAAATCCTTTAATT ATGGACGGAGAACTGCCGCCGGCATCGGCACCGGCTCCGGCTCCGGCTCCACTGTCCATCCATCCTGCCGTAACACCGCTATCATTCTTACTCGGAACATGGAGAGGCAAAGGCGAAGGTGGATTCCCCACCATTAATTCCTTCTCTTACGGCGAGGAACTTCACTTCTCCCATTCTGGCAAGCCAGTGATTTCCTACAGTCAAAAGACATGGAAACTCGATTCTAAAGAGCCAATGCATGCTGAGAGTGGCTATTGGCGTCCCAAGCCCGATGGTACCATTGAGGTAGTCATCGCTCAAAGTACTGGTCTCGTTGAAGTTCAGAAAGGAACCTACAATGCAGAAGAGAAAGTGATAAAGCTTCAAAGCGAACTTGTGGGAAATGCTTCTAAGGTGAAAGAAATAAGCAGAGTGTTTAAATTGGTGGATGGAGAGCTTTCCTACGTGGTTCAGATGGCTACTACCTTAACCAGTCTTCAACCACACTTAAAAGCCTTGCTCACTAAAGTTTGA ATGGACGGAGAACTGCCGCCGGCATCGGCACCGGCTCCGGCTCCGGCTCCACTGTCCATCCATCCTGCCGTAACACCGCTATCATTCTTACTCGGAACATGGAGAGGCAAAGGCGAAGGTGGATTCCCCACCATTAATTCCTTCTCTTACGGCGAGGAACTTCACTTCTCCCATTCTGGCAAGCCAGTGATTTCCTACAGTCAAAAGACATGGAAACTCGATTCTAAAGAGCCAATGCATGCTGAGAGTGGCTATTGGCGTCCCAAGCCCGATGGTACCATTGAGGTAGTCATCGCTCAAAGTACTGGTCTCGTTGAAGTTCAGAAAGGAACCTACAATGCAGAAGAGAAAGTGATAAAGCTTCAAAGCGAACTTGTGGGAAATGCTTCTAAGGTGAAAGAAATAAGCAGAGTGTTTAAATTGGTGGATGGAGAGCTTTCCTACGTGGTTCAGATGGCTACTACCTTAACCAGTCTTCAACCACACTTAAAAGCCTTGCTCACTAAAGTTTGA MDGELPPASAPAPAPAPLSIHPAVTPLSFLLGTWRGKGEGGFPTINSFSYGEELHFSHSGKPVISYSQKTWKLDSKEPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNASKVKEISRVFKLVDGELSYVVQMATTLTSLQPHLKALLTKV*
BLAST of Csa6G134380 vs. Swiss-Prot
Match: Y1926_ARATH (UPF0678 fatty acid-binding protein-like protein At1g79260 OS=Arabidopsis thaliana GN=At1g79260 PE=1 SV=1) HSP 1 Score: 242.3 bits (617), Expect = 3.9e-63 Identity = 117/158 (74.05%), Postives = 137/158 (86.71%), Query Frame = 1
BLAST of Csa6G134380 vs. Swiss-Prot
Match: Y1995_MYCMM (UPF0678 fatty acid-binding protein-like protein MMAR_1995 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=MMAR_1995 PE=3 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 1.2e-27 Identity = 65/158 (41.14%), Postives = 93/158 (58.86%), Query Frame = 1
BLAST of Csa6G134380 vs. Swiss-Prot
Match: Y3360_MYCUA (UPF0678 fatty acid-binding protein-like protein MUL_3360 OS=Mycobacterium ulcerans (strain Agy99) GN=MUL_3360 PE=3 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 1.6e-27 Identity = 65/158 (41.14%), Postives = 93/158 (58.86%), Query Frame = 1
BLAST of Csa6G134380 vs. Swiss-Prot
Match: Y2833_MYCPA (UPF0678 fatty acid-binding protein-like protein MAP_2833c OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=MAP_2833c PE=3 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 4.5e-27 Identity = 63/156 (40.38%), Postives = 92/156 (58.97%), Query Frame = 1
BLAST of Csa6G134380 vs. Swiss-Prot
Match: Y3611_MYCA1 (UPF0678 fatty acid-binding protein-like protein MAV_3611 OS=Mycobacterium avium (strain 104) GN=MAV_3611 PE=3 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 2.3e-26 Identity = 62/156 (39.74%), Postives = 90/156 (57.69%), Query Frame = 1
BLAST of Csa6G134380 vs. TrEMBL
Match: A0A0A0KAL2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G134380 PE=3 SV=1) HSP 1 Score: 343.6 bits (880), Expect = 1.4e-91 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1
BLAST of Csa6G134380 vs. TrEMBL
Match: A5BBZ0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g01130 PE=3 SV=1) HSP 1 Score: 277.3 bits (708), Expect = 1.2e-71 Identity = 134/156 (85.90%), Postives = 145/156 (92.95%), Query Frame = 1
BLAST of Csa6G134380 vs. TrEMBL
Match: M0S6G6_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1) HSP 1 Score: 271.2 bits (692), Expect = 8.8e-70 Identity = 130/157 (82.80%), Postives = 145/157 (92.36%), Query Frame = 1
BLAST of Csa6G134380 vs. TrEMBL
Match: C6SZP1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G160000 PE=2 SV=1) HSP 1 Score: 262.7 bits (670), Expect = 3.1e-67 Identity = 132/171 (77.19%), Postives = 144/171 (84.21%), Query Frame = 1
BLAST of Csa6G134380 vs. TrEMBL
Match: A0A0B2QJ30_GLYSO (UPF0678 fatty acid-binding protein-like protein OS=Glycine soja GN=glysoja_026546 PE=4 SV=1) HSP 1 Score: 262.7 bits (670), Expect = 3.1e-67 Identity = 132/171 (77.19%), Postives = 144/171 (84.21%), Query Frame = 1
BLAST of Csa6G134380 vs. TAIR10
Match: AT1G79260.1 (AT1G79260.1 Domain of unknown function DUF1794 (InterPro:IPR014878)) HSP 1 Score: 242.3 bits (617), Expect = 2.2e-64 Identity = 117/158 (74.05%), Postives = 137/158 (86.71%), Query Frame = 1
BLAST of Csa6G134380 vs. NCBI nr
Match: gi|449444310|ref|XP_004139918.1| (PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Cucumis sativus]) HSP 1 Score: 343.6 bits (880), Expect = 2.0e-91 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1
BLAST of Csa6G134380 vs. NCBI nr
Match: gi|659112544|ref|XP_008456272.1| (PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Cucumis melo]) HSP 1 Score: 322.8 bits (826), Expect = 3.7e-85 Identity = 162/170 (95.29%), Postives = 164/170 (96.47%), Query Frame = 1
BLAST of Csa6G134380 vs. NCBI nr
Match: gi|731434477|ref|XP_010645079.1| (PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Vitis vinifera]) HSP 1 Score: 277.3 bits (708), Expect = 1.8e-71 Identity = 134/156 (85.90%), Postives = 145/156 (92.95%), Query Frame = 1
BLAST of Csa6G134380 vs. NCBI nr
Match: gi|672163311|ref|XP_008801499.1| (PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Phoenix dactylifera]) HSP 1 Score: 273.5 bits (698), Expect = 2.5e-70 Identity = 133/170 (78.24%), Postives = 148/170 (87.06%), Query Frame = 1
BLAST of Csa6G134380 vs. NCBI nr
Match: gi|695005842|ref|XP_009389385.1| (PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Musa acuminata subsp. malaccensis]) HSP 1 Score: 271.2 bits (692), Expect = 1.3e-69 Identity = 130/157 (82.80%), Postives = 145/157 (92.36%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|