Carg03410 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03410
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	UPF0678 fatty acid-binding protein-like protein
Location	Cucurbita_argyrosperma_scaffold_005 : 1713901 .. 1717330 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGAGAACTGCCGCCGGTACCGGCTCCGTTGTCCATCCACCCGGCCGTAGCACCGCTATCATTTTTACTTGGAACATGGAGAGGCAAAGGCGACGGTGGATTCCCCACCATTAATTCCTTCTCTTACGGCGAGGAGATCCATTTCTCCCATTCCGGCAAGGTAACCTTTAACTCCCTGTTCTTCGTCTCTATTTGTTGTTTTCGCTGATATCATCTTAATATAGTTATAATTATCTCATTCCACGCGGTTGGATTTTGTTTTTTTTGTCTAATCGGTTATCTTCGTTGTTTGGGGATTTTTTTAATACGATGATTGTGGGAGAAGCCAGTGATTTCTTACAGCCAAAAGACTTGGAAACTCGATTCTAGAGAGCCTATGCACGCTGAGAGTGGCTACTGGCGTCCCAAGCCCGATGGTACCATTGAAGTTGTAATCGCTCAAAGCACTGGTCTCGTTGAAGTTCAGGTCAAAATCGCTGTCTCTTTCTCGTGTGCTCTACCGTTACATTCAAATTCGTAGGCTAAAAGAGAATTGTGGTTGAATATAGACGTGCTTATGTTCTCTGATTTTCATTTTGCGAAGAATGATTGAAACACACGGATTTGTGACATGATGCAAAGTGGCTCTATGCTGTATGTGATCTAACAATATAATCGATCTTGTTTGTTGAAATGAAATCTTCCTTTTTCCCTCATCTGGCCTTGTCTTTCCCACGAAAACAAACGGCCACGTTTTCAAACCATTGAAAATCTCAGTCGCCATCTTGTAAATTGAAACCATTCAATTACTCACTCCATGGCCTACACCTTGGATTGTTTAACTATACTGTCACTGTCAACCATATCACAATTGCTACGTTAGATTCTGCAGAGTTGCAAGTGCACACCAGCTGCTCGATCCGATGGCCGACACAAATATAAAAAGGTTTAGGTAATTCATTATTTGTGAAGGAAATCATGTATAAAAAAGTTGGTAGTTCATTTGAAAGTCAACTTTATGGATAGAATATGTAGTTAAAGTGGATAAGTCTGAAATGAAATTAACCATCATGGGCTTGCCTGGTGGTCAACAAGGTCATGGATCGAAAGGGTCTAGAGGAAATGAGTTCAATCCATGGTGACCACTTACCTAAGGTTTAATTTAGTTTCCTTGACATCCGAATATTTTATAGGGTCAAGGCGGTTGTCCCGTGAGATTAAAACTGACCTAAACACTCATAGTTGTGAAAAAATGAAACTAAACTGCTCAAATCCCTCCTCCATATGGATGTGTCAAAATTGATCAAACTACAAGTTTTTTTTGTCTTAGCTGCTGATCTTCTTGTGCTCAGTTTTTTATCTGTGCTTTGAGCTTGTGGTGTTGGTGTAGATTGCCTTTCTTTGTTTTCACTTGCTGTGTGCATATTCTTCACACAACAGAAAGGAGCAGGTGTTCTGGTGAACTAGATAAGAAGGGAAATAAGCCACATTAAATTCAAGGTTCTAGGAAGGTTCTCTTAATAGGATTGAATTTAGAAATAAATCAGCTGCAATTTCTGATGATTAGATGTGACTTTTAGCTGAAGAAAAAGAAGAAAAATTTATTCATATTACTTGCTAGTGAGCTTTCACATTGCCATAAAAGCTCTGGTTTCTAGCCAATTTTAATTTGCTTTTGGCAGTGAAATTTTATAACTAGTATTATTTTCATCAGTATCATTAAACTTCTGAATATTGTTTTCCATTTTCTAAAACTGGGAAGATTATTGCAATGCAACTAATGGAGACGTTTGTTTTACCTTCCATGTAATATAACTCGATTTTTATCTCTCTTCCAGAAAGGAACATATAATGCAGAAGAGAAAGTGATAATGCTCCAAAGTGAAGTTGTGGGGAATGCTTCTAAGGTAACGTTTACTAGATCATCATTATTCAGGGCCATTCCAAATACGGACATATTATTTTTAGGTTTCAAATTTTGTTGTTCCATGATACTGATAGTTAATTGTCATCCCTGCTAACTATGGCAAGTAAAAACCTTATAGGATAAACGTACGTGTTAGACCTTTGTGACTTAGGGTTAAGAAGTTAAAGCCTTGCTTTGGTTGTTAGATCTGTGTGACTTGGGGCTCGTCCCAACAGTTTATGAACCCAAGCTTATGTGTAATAGTCCAAGCCCACCGTTAAGGAGATATTGTCTGCTTTGCCCATTATATATTGCCGTCAGCCTCATGGTTTTAAAACGCTTCTACTAGAAAGAGGTTTCCACACCCTTGTAAGAAATGCTTCGTTCTCCTCTCCAACCAACGTGGGATCTCACAATCCACCCCCTTTGGAGGTCCAACATCCTTGCTGGCACACCGCCCGGTATTTGGCTCTAATACTATTTGTAACAACTCAAGCCTACCGCCAGCAGTATTGTCCGCTTTGGCCTGTTATATATCACTGTTAGTCTCACGGTTTTAAAATGCGTCTACTAGGAAAAGGTTTCAACACCCTTATAAAGAATGTTTTGTTCTTCTCTCCAACTATTGTGAGATCTCACATCGTGAAATCTACCCTTTCTATACAAATCCTTCTAAATGATAAACCTTTGAACTAAATATCATAATAGGAACTCAAGTTTCTATAATTTATTTGTTTATACAATCCAAACACAAGTGTTACACAAACCTAAATGTCCCACTTCTAGGCTTCATAATGAGAGACTTTAAAATCATGAGCCAAACATCCCTTTATAACTGTACAAATGATTTGACTCTATAAGAGACGATACTTGAACCCGAAAACAGCGCGTTAGGAAAGAGATACATTATCATTAACCAATGGAAAACTGCTCGTCCCCGTTTGTATTAGATCAATACAACGTACCAGACAGAACTAGGATCTTTTTTTCCCTTCATTTTTTTATGGCGAATGGTTTCCTCTCGTCCCCATTCGGTTTCCTTCTCCTTTTGCTCGCATTGCATGCATCAATAATTTGTAATACTGATCAACATACCAAAGTCCCAGACAAAGCCAAACTATTTACCTGTCTCTATGGAACAGGTGAAAGAAATAAGCAGAGCGTTTAAACTGGTGGATGGAGAACTTTCCTACGTGGTTCAGATGGCTACTGGCTTAACCAGTCTTCAACAACACTTGAAAGCCTCGCTTACTAAAGTTTGATGCAAGAAACGAAATGGTACACAAATCCTCTCTTTAGATTTAGAATACAGGCTACAATAAATCTAGACTGAATTGCAATTAGCATGTTTCTATATTTCTGTAGTGTTTATTCCCCATCCTCCTCCCTCTAAAGTATTATCTAATAGAAATTTTCTCATATATTTCACTGTTGCGTCAAAGTTTTTTTTGTTATTAAATTTGAAGATGTTGGAATATTGAGGTTGTGCAACAGACTGCTCATGGTCGTTTGAGAATGAAATTCTTGGTTGACTGGATCA

mRNA sequence

ATGGACGGAGAACTGCCGCCGGTACCGGCTCCGTTGTCCATCCACCCGGCCGTAGCACCGCTATCATTTTTACTTGGAACATGGAGAGGCAAAGGCGACGGTGGATTCCCCACCATTAATTCCTTCTCTTACGGCGAGGAGATCCATTTCTCCCATTCCGGCAAGAAGCCAGTGATTTCTTACAGCCAAAAGACTTGGAAACTCGATTCTAGAGAGCCTATGCACGCTGAGAGTGGCTACTGGCGTCCCAAGCCCGATGGTACCATTGAAGTTGTAATCGCTCAAAGCACTGGTCTCGTTGAAGTTCAGAAAGGAACATATAATGCAGAAGAGAAAGTGATAATGCTCCAAAGTGAAGTTGTGGGGAATGCTTCTAAGGTGAAAGAAATAAGCAGAGCGTTTAAACTGGTGGATGGAGAACTTTCCTACGTGGTTCAGATGGCTACTGGCTTAACCAGTCTTCAACAACACTTGAAAGCCTCGCTTACTAAAGTTTGATGCAAGAAACGAAATGGTACACAAATCCTCTCTTTAGATTTAGAATACAGGCTACAATAAATCTAGACTGAATTGCAATTAGCATGTTTCTATATTTCTGTAGTGTTTATTCCCCATCCTCCTCCCTCTAAAGTATTATCTAATAGAAATTTTCTCATATATTTCACTGTTGCGTCAAAGTTTTTTTTGTTATTAAATTTGAAGATGTTGGAATATTGAGGTTGTGCAACAGACTGCTCATGGTCGTTTGAGAATGAAATTCTTGGTTGACTGGATCA

Coding sequence (CDS)

ATGGACGGAGAACTGCCGCCGGTACCGGCTCCGTTGTCCATCCACCCGGCCGTAGCACCGCTATCATTTTTACTTGGAACATGGAGAGGCAAAGGCGACGGTGGATTCCCCACCATTAATTCCTTCTCTTACGGCGAGGAGATCCATTTCTCCCATTCCGGCAAGAAGCCAGTGATTTCTTACAGCCAAAAGACTTGGAAACTCGATTCTAGAGAGCCTATGCACGCTGAGAGTGGCTACTGGCGTCCCAAGCCCGATGGTACCATTGAAGTTGTAATCGCTCAAAGCACTGGTCTCGTTGAAGTTCAGAAAGGAACATATAATGCAGAAGAGAAAGTGATAATGCTCCAAAGTGAAGTTGTGGGGAATGCTTCTAAGGTGAAAGAAATAAGCAGAGCGTTTAAACTGGTGGATGGAGAACTTTCCTACGTGGTTCAGATGGCTACTGGCTTAACCAGTCTTCAACAACACTTGAAAGCCTCGCTTACTAAAGTTTGA

Protein sequence

MDGELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKKPVISYSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEVVGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTKV

Homology

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BLAST of Carg03410 vs. NCBI nr
Match: XP_022943798.1 (UPF0678 fatty acid-binding protein-like protein At1g79260 [Cucurbita moschata])

HSP 1 Score: 324.7 bits (831), Expect = 1.8e-85
Identity = 164/165 (99.39%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MDGELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKKPVIS 60
           MDGELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSG KPVIS
Sbjct: 1   MDGELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSG-KPVIS 60

Query: 61  YSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEV 120
           YSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEV
Sbjct: 61  YSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEV 120

Query: 121 VGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTKV 166
           VGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTKV
Sbjct: 121 VGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTKV 164

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BLAST of Carg03410 vs. NCBI nr
Match: XP_023512065.1 (UPF0678 fatty acid-binding protein-like protein At1g79260 [Cucurbita pepo subsp. pepo] >XP_023512066.1 UPF0678 fatty acid-binding protein-like protein At1g79260 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 322.4 bits (825), Expect = 9.0e-85
Identity = 163/165 (98.79%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MDGELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKKPVIS 60
           MDGELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSG KPVIS
Sbjct: 1   MDGELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSG-KPVIS 60

Query: 61  YSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEV 120
           YSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEV
Sbjct: 61  YSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEV 120

Query: 121 VGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTKV 166
           VGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQ HLKASLTKV
Sbjct: 121 VGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQPHLKASLTKV 164

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BLAST of Carg03410 vs. NCBI nr
Match: XP_022986194.1 (UPF0678 fatty acid-binding protein-like protein At1g79260 isoform X2 [Cucurbita maxima] >XP_022986195.1 UPF0678 fatty acid-binding protein-like protein At1g79260 isoform X2 [Cucurbita maxima])

HSP 1 Score: 319.7 bits (818), Expect = 5.8e-84
Identity = 161/165 (97.58%), Postives = 162/165 (98.18%), Query Frame = 0


Query: 1   MDGELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKKPVIS 60
           MDGELPP+PAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSG KPVIS
Sbjct: 1   MDGELPPIPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSG-KPVIS 60

Query: 61  YSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEV 120
           YSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEV
Sbjct: 61  YSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEV 120

Query: 121 VGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTKV 166
           VGNASKVKEISRAFKLVDGELSYVVQMATG TSLQ HLKASLTKV
Sbjct: 121 VGNASKVKEISRAFKLVDGELSYVVQMATGSTSLQPHLKASLTKV 164

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BLAST of Carg03410 vs. NCBI nr
Match: XP_008456272.1 (PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 isoform X1 [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 1.4e-77
Identity = 152/167 (91.02%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MDGELPP--VPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKKPV 60
           MDGELPP   PAP SIHPAV PLSFLLGTWRGKGDGGFPTINSFSYGEE+HFSHSG KPV
Sbjct: 1   MDGELPPASAPAPPSIHPAVTPLSFLLGTWRGKGDGGFPTINSFSYGEELHFSHSG-KPV 60

Query: 61  ISYSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQS 120
           ISYSQKTWKLDS+EPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGT+NAEEKVI LQS
Sbjct: 61  ISYSQKTWKLDSKEPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTFNAEEKVIKLQS 120

Query: 121 EVVGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTKV 166
           E+VGNASKVKEISR FKLVDGELSYVVQMAT LTSLQ HLKA LTKV
Sbjct: 121 ELVGNASKVKEISRVFKLVDGELSYVVQMATALTSLQPHLKALLTKV 166

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BLAST of Carg03410 vs. NCBI nr
Match: XP_022149648.1 (UPF0678 fatty acid-binding protein-like protein At1g79260 [Momordica charantia] >XP_022149649.1 UPF0678 fatty acid-binding protein-like protein At1g79260 [Momordica charantia] >XP_022149650.1 UPF0678 fatty acid-binding protein-like protein At1g79260 [Momordica charantia])

HSP 1 Score: 290.0 bits (741), Expect = 4.9e-75
Identity = 145/165 (87.88%), Postives = 152/165 (92.12%), Query Frame = 0


Query: 1   MDGELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKKPVIS 60
           MDGELPP  AP SIHPAVAPLSFLLGTWRGKG+GGFPTINSFSYGEE+HFSHSG KPVIS
Sbjct: 1   MDGELPPASAPSSIHPAVAPLSFLLGTWRGKGEGGFPTINSFSYGEELHFSHSG-KPVIS 60

Query: 61  YSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEV 120
           Y+QKTWKL S EPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEE  I LQSE+
Sbjct: 61  YTQKTWKLSSGEPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEENAIKLQSEL 120

Query: 121 VGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTKV 166
           VGNASKVKEI+R FKLVDG+LSYVVQMATG TSLQ HLKA L+KV
Sbjct: 121 VGNASKVKEITRVFKLVDGDLSYVVQMATGSTSLQPHLKALLSKV 164

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BLAST of Carg03410 vs. TAIR10
Match: AT1G79260.1 (Domain of unknown function DUF1794 (InterPro:IPR014878))

HSP 1 Score: 228.4 bits (581), Expect = 3.2e-60
Identity = 117/163 (71.78%), Postives = 137/163 (84.05%), Query Frame = 0


Query: 3   GELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKKPVISYS 62
           GE PPV      HP VAPLS+LLGTWRG+G+G +PTI SF YGEEI FSHSG KPVI+Y+
Sbjct: 11  GESPPV------HPFVAPLSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSG-KPVIAYT 70

Query: 63  QKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEVVG 122
           QKTWKL+S  PMHAESGY+RP+PDG+IEVVIAQSTGLVEVQKGTYN +E+ I L+S++VG
Sbjct: 71  QKTWKLESGAPMHAESGYFRPRPDGSIEVVIAQSTGLVEVQKGTYNVDEQSIKLKSDLVG 130

Query: 123 NASKVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTKV 166
           NASKVKEISR F+LVDG+LSYVV+M+T    LQ HLKA L K+
Sbjct: 131 NASKVKEISREFELVDGKLSYVVRMSTTTNPLQPHLKAILDKL 166

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BLAST of Carg03410 vs. Swiss-Prot
Match: sp|O64527|Y1926_ARATH (UPF0678 fatty acid-binding protein-like protein At1g79260 OS=Arabidopsis thaliana OX=3702 GN=At1g79260 PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 5.8e-59
Identity = 117/163 (71.78%), Postives = 137/163 (84.05%), Query Frame = 0


Query: 3   GELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKKPVISYS 62
           GE PPV      HP VAPLS+LLGTWRG+G+G +PTI SF YGEEI FSHSG KPVI+Y+
Sbjct: 11  GESPPV------HPFVAPLSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSG-KPVIAYT 70

Query: 63  QKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEVVG 122
           QKTWKL+S  PMHAESGY+RP+PDG+IEVVIAQSTGLVEVQKGTYN +E+ I L+S++VG
Sbjct: 71  QKTWKLESGAPMHAESGYFRPRPDGSIEVVIAQSTGLVEVQKGTYNVDEQSIKLKSDLVG 130

Query: 123 NASKVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTKV 166
           NASKVKEISR F+LVDG+LSYVV+M+T    LQ HLKA L K+
Sbjct: 131 NASKVKEISREFELVDGKLSYVVRMSTTTNPLQPHLKAILDKL 166

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BLAST of Carg03410 vs. Swiss-Prot
Match: sp|B2HLY1|Y1995_MYCMM (UPF0678 fatty acid-binding protein-like protein MMAR_1995 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) OX=216594 GN=MMAR_1995 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-26
Identity = 66/159 (41.51%), Postives = 97/159 (61.01%), Query Frame = 0


Query: 11  PLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKKPVISYSQKTWKLDS 70
           P  +HP +  L+ LLGTW G+G G +PTI  F Y EE+ FSH G KP + Y+QKT  +  
Sbjct: 2   PADLHPDLDALAPLLGTWAGQGSGEYPTIEPFEYLEEVVFSHVG-KPFLVYAQKTRAVAD 61

Query: 71  REPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQ--SEVVG---NAS 130
             P+HAE+GY R    G +E+V+A  +G+ E++ GTY+A   VI ++  +  +G    A 
Sbjct: 62  GAPLHAETGYLRVPKPGQVELVLAHPSGITEIEVGTYSASGGVIEMEMVTTAIGMTPTAK 121

Query: 131 KVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTK 165
           +V  +SR+F++V  ELSY ++M      LQ HL A L +
Sbjct: 122 EVTALSRSFRMVGDELSYRLRMGAVGLPLQHHLGARLRR 159

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BLAST of Carg03410 vs. Swiss-Prot
Match: sp|A0PT73|Y3360_MYCUA (UPF0678 fatty acid-binding protein-like protein MUL_3360 OS=Mycobacterium ulcerans (strain Agy99) OX=362242 GN=MUL_3360 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.4e-26
Identity = 66/159 (41.51%), Postives = 97/159 (61.01%), Query Frame = 0


Query: 11  PLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKKPVISYSQKTWKLDS 70
           P  +HP +  L+ LLGTW G+G G +PTI  F Y EE+ FSH G KP + Y+QKT  +  
Sbjct: 2   PADLHPDLDALAPLLGTWAGQGAGEYPTIEPFEYLEEVVFSHVG-KPFLVYAQKTRAVAD 61

Query: 71  REPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQ--SEVVG---NAS 130
             P+HAE+GY R    G +E+V+A  +G+ E++ GTY+A   VI ++  +  +G    A 
Sbjct: 62  GTPLHAETGYLRVPKPGQVELVLAHPSGITEIEVGTYSASGGVIEMEMVTTAIGMTPTAK 121

Query: 131 KVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTK 165
           +V  +SR+F++V  ELSY ++M      LQ HL A L +
Sbjct: 122 EVTALSRSFRMVGDELSYRLRMGAVGLPLQHHLGARLRR 159

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BLAST of Carg03410 vs. Swiss-Prot
Match: sp|A0R6J8|Y6574_MYCS2 (UPF0678 fatty acid-binding protein-like protein MSMEG_6574/MSMEI_6396 OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=MSMEG_6574 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.4e-25
Identity = 67/159 (42.14%), Postives = 98/159 (61.64%), Query Frame = 0


Query: 12  LSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKKPVISYSQKTWKLDSR 71
           + +HP +APL+ LLGTW G G G +PTI SF Y EEI F H G KP ++Y Q+T   D  
Sbjct: 2   IDLHPNIAPLAPLLGTWAGPGAGEYPTIQSFEYLEEITFGHVG-KPFLTYQQRTKARDDG 61

Query: 72  EPMHAESGYWR-PKPDGTIEVVIAQSTGLVEVQKGTYN-AEEKVIM-LQSEVVG---NAS 131
            P+HAE GY R P PD  +E V+A  TG+ E+Q+GT     +++ M +++  +G   +A 
Sbjct: 62  RPLHAEVGYIRVPAPD-RVEWVLAHPTGITEIQEGTLTVGGDRITMDVKATTIGLTASAK 121

Query: 132 KVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTK 165
            V  ++R+F++   EL+Y +QM      LQ HL A+L +
Sbjct: 122 NVTALARSFRITGDELTYTLQMGAVGQPLQHHLAATLRR 158

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BLAST of Carg03410 vs. Swiss-Prot
Match: sp|Q73W27|Y2833_MYCPA (UPF0678 fatty acid-binding protein-like protein MAP_2833c OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) OX=262316 GN=MAP_2833c PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 9.3e-25
Identity = 63/157 (40.13%), Postives = 92/157 (58.60%), Query Frame = 0


Query: 11  PLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKKPVISYSQKTWKLDS 70
           P  +HP +A L+ LLGTW G+G G +PTI  F Y EE+ FSH G KP ++Y+QKT     
Sbjct: 2   PTDLHPDLAALAPLLGTWTGRGSGKYPTIQPFDYLEEVTFSHVG-KPFLAYAQKTRAAAD 61

Query: 71  REPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEVVG-----NAS 130
            +P+HAE+GY R    G +E+V+A  +G+ E++ G+Y     +I ++          +A 
Sbjct: 62  GKPLHAETGYLRVPQPGRLELVLAHPSGITEIEVGSYAVTGGLIEMRMSTTSIGLTPSAK 121

Query: 131 KVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASL 163
           +V  ++R F++   ELSY VQM      LQ HL A L
Sbjct: 122 EVTALARWFRIDGDELSYSVQMGAVGQPLQDHLAAVL 157

[Close]

BLAST of Carg03410 vs. TrEMBL
Match: tr|A0A1S3C440|A0A1S3C440_CUCME (UPF0678 fatty acid-binding protein-like protein At1g79260 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496266 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 9.2e-78
Identity = 152/167 (91.02%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MDGELPP--VPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKKPV 60
           MDGELPP   PAP SIHPAV PLSFLLGTWRGKGDGGFPTINSFSYGEE+HFSHSG KPV
Sbjct: 1   MDGELPPASAPAPPSIHPAVTPLSFLLGTWRGKGDGGFPTINSFSYGEELHFSHSG-KPV 60

Query: 61  ISYSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQS 120
           ISYSQKTWKLDS+EPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGT+NAEEKVI LQS
Sbjct: 61  ISYSQKTWKLDSKEPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTFNAEEKVIKLQS 120

Query: 121 EVVGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTKV 166
           E+VGNASKVKEISR FKLVDGELSYVVQMAT LTSLQ HLKA LTKV
Sbjct: 121 ELVGNASKVKEISRVFKLVDGELSYVVQMATALTSLQPHLKALLTKV 166

[Close]

BLAST of Carg03410 vs. TrEMBL
Match: tr|A0A0A0KAL2|A0A0A0KAL2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G134380 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.8e-74
Identity = 148/171 (86.55%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 1   MDGELPPV------PAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSG 60
           MDGELPP            IHPAV PLSFLLGTWRGKG+GGFPTINSFSYGEE+HFSHSG
Sbjct: 1   MDGELPPASXXXXXXXXXXIHPAVTPLSFLLGTWRGKGEGGFPTINSFSYGEELHFSHSG 60

Query: 61  KKPVISYSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVI 120
            KPVISYSQKTWKLDS+EPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVI
Sbjct: 61  -KPVISYSQKTWKLDSKEPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVI 120

Query: 121 MLQSEVVGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTKV 166
            LQSE+VGNASKVKEISR FKLVDGELSYVVQMAT LTSLQ HLKA LTKV
Sbjct: 121 KLQSELVGNASKVKEISRVFKLVDGELSYVVQMATTLTSLQPHLKALLTKV 170

[Close]

BLAST of Carg03410 vs. TrEMBL
Match: tr|A0A1S4E121|A0A1S4E121_CUCME (UPF0678 fatty acid-binding protein-like protein At1g79260 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496266 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 3.0e-68
Identity = 139/167 (83.23%), Postives = 143/167 (85.63%), Query Frame = 0


Query: 1   MDGELPP--VPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKKPV 60
           MDGELPP   PAP SIHPAV PLSFLLGTWRGKGDGGFPTINSFSYGEE+HFSHSG KPV
Sbjct: 1   MDGELPPASAPAPPSIHPAVTPLSFLLGTWRGKGDGGFPTINSFSYGEELHFSHSG-KPV 60

Query: 61  ISYSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQS 120
           ISYSQKTWKLDS+EPMHAESGYWRPKPDGTIE             KGT+NAEEKVI LQS
Sbjct: 61  ISYSQKTWKLDSKEPMHAESGYWRPKPDGTIE-------------KGTFNAEEKVIKLQS 120

Query: 121 EVVGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTKV 166
           E+VGNASKVKEISR FKLVDGELSYVVQMAT LTSLQ HLKA LTKV
Sbjct: 121 ELVGNASKVKEISRVFKLVDGELSYVVQMATALTSLQPHLKALLTKV 153

[Close]

BLAST of Carg03410 vs. TrEMBL
Match: tr|A0A2R6QDS2|A0A2R6QDS2_ACTCH (UPF0678 fatty acid-binding protein-like protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc18814 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.6e-66
Identity = 124/157 (78.98%), Postives = 140/157 (89.17%), Query Frame = 0


Query: 9   PAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKKPVISYSQKTWKL 68
           P P ++HPAV PLS+LLG+WRG+G+GGFPTI SF YGEE+HF+H G KPVI+YSQKTWKL
Sbjct: 32  PQPAAVHPAVEPLSYLLGSWRGQGEGGFPTITSFKYGEELHFAHPGNKPVIAYSQKTWKL 91

Query: 69  DSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEVVGNASKVK 128
           +S EPMHAESGYWRPKPDGTIEVVIAQSTGL EV KGTYN EEKV+ LQSEVV NASKV+
Sbjct: 92  NSGEPMHAESGYWRPKPDGTIEVVIAQSTGLAEVLKGTYNVEEKVVKLQSEVVANASKVR 151

Query: 129 EISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTKV 166
           EI+R FKLVDGEL+YVV+MAT LTSLQ HLKASL K+
Sbjct: 152 EITRVFKLVDGELAYVVEMATSLTSLQPHLKASLRKL 188

[Close]

BLAST of Carg03410 vs. TrEMBL
Match: tr|A5BBZ0|A5BBZ0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0085g01130 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 6.2e-66
Identity = 129/165 (78.18%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 1   MDGELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKKPVIS 60
           MD      P P  +HPA+ PLS+LLGTWRG+G+GGFPTINSFSYGEE+ FSHSG KPVI+
Sbjct: 1   MDANNSARPPPPPVHPAIQPLSYLLGTWRGQGEGGFPTINSFSYGEELLFSHSG-KPVIA 60

Query: 61  YSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEV 120
           YSQ+TWKL S EPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEK++ LQSE+
Sbjct: 61  YSQRTWKLSSGEPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKLVKLQSEL 120

Query: 121 VGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQQHLKASLTKV 166
           VGNASKV EISR F+LV+GELSYVVQMAT L SLQ HLKA L K+
Sbjct: 121 VGNASKVTEISRVFELVNGELSYVVQMATNLNSLQPHLKALLKKI 164

The following BLAST results are available for this feature:

BLAST of Carg03410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943798.1	1.8e-85	99.39	UPF0678 fatty acid-binding protein-like protein At1g79260 [Cucurbita moschata]	[more]
XP_023512065.1	9.0e-85	98.79	UPF0678 fatty acid-binding protein-like protein At1g79260 [Cucurbita pepo subsp....	[more]
XP_022986194.1	5.8e-84	97.58	UPF0678 fatty acid-binding protein-like protein At1g79260 isoform X2 [Cucurbita ...	[more]
XP_008456272.1	1.4e-77	91.02	PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 isoform X1 ...	[more]
XP_022149648.1	4.9e-75	87.88	UPF0678 fatty acid-binding protein-like protein At1g79260 [Momordica charantia] ...	[more]

BLAST of Carg03410 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79260.1	3.2e-60	71.78	Domain of unknown function DUF1794 (InterPro:IPR014878)	[more]

BLAST of Carg03410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O64527\|Y1926_ARATH	5.8e-59	71.78	UPF0678 fatty acid-binding protein-like protein At1g79260 OS=Arabidopsis thalian...	[more]
sp\|B2HLY1\|Y1995_MYCMM	4.9e-26	41.51	UPF0678 fatty acid-binding protein-like protein MMAR_1995 OS=Mycobacterium marin...	[more]
sp\|A0PT73\|Y3360_MYCUA	8.4e-26	41.51	UPF0678 fatty acid-binding protein-like protein MUL_3360 OS=Mycobacterium ulcera...	[more]
sp\|A0R6J8\|Y6574_MYCS2	2.4e-25	42.14	UPF0678 fatty acid-binding protein-like protein MSMEG_6574/MSMEI_6396 OS=Mycobac...	[more]
sp\|Q73W27\|Y2833_MYCPA	9.3e-25	40.13	UPF0678 fatty acid-binding protein-like protein MAP_2833c OS=Mycobacterium parat...	[more]

BLAST of Carg03410 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C440\|A0A1S3C440_CUCME	9.2e-78	91.02	UPF0678 fatty acid-binding protein-like protein At1g79260 isoform X1 OS=Cucumis ...	[more]
tr\|A0A0A0KAL2\|A0A0A0KAL2_CUCSA	2.8e-74	86.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G134380 PE=3 SV=1	[more]
tr\|A0A1S4E121\|A0A1S4E121_CUCME	3.0e-68	83.23	UPF0678 fatty acid-binding protein-like protein At1g79260 isoform X2 OS=Cucumis ...	[more]
tr\|A0A2R6QDS2\|A0A2R6QDS2_ACTCH	1.6e-66	78.98	UPF0678 fatty acid-binding protein-like protein OS=Actinidia chinensis var. chin...	[more]
tr\|A5BBZ0\|A5BBZ0_VITVI	6.2e-66	78.18	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0085g01130 PE=3 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014878	DUF1794
IPR012674	Calycin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03410-RA	Carg03410-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012674	Calycin	GENE3D	G3DSA:2.40.128.20		coord: 12..165 e-value: 1.1E-59 score: 202.6
IPR012674	Calycin	SUPERFAMILY	SSF50814	Lipocalins	coord: 13..165
IPR014878	Domain of unknown function DUF1794	PFAM	PF08768	DUF1794	coord: 18..164 e-value: 8.6E-44 score: 149.0
IPR014878	Domain of unknown function DUF1794	CDD	cd07828	nitrobindin	coord: 18..164 e-value: 2.56564E-61 score: 187.812
None	No IPR available	PANTHER	PTHR15854	THAP4 PROTEIN	coord: 7..165

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03410	Cla013436	Watermelon (97103) v1	carwmB0330
Carg03410	Csa6G134380	Cucumber (Chinese Long) v2	carcuB0367
Carg03410	MELO3C019608	Melon (DHL92) v3.5.1	carmeB0339
Carg03410	ClCG02G018850	Watermelon (Charleston Gray)	carwcgB0327
Carg03410	CSPI06G10880	Wild cucumber (PI 183967)	carcpiB0370
Carg03410	Cucsa.118730	Cucumber (Gy14) v1	carcgyB0391
Carg03410	CmoCh20G003190	Cucurbita moschata (Rifu)	carcmoB0464
Carg03410	Lsi10G015000	Bottle gourd (USVL1VR-Ls)	carlsiB303
Carg03410	Cp4.1LG16g06880	Cucurbita pepo (Zucchini)	carcpeB0465
Carg03410	CsGy6G011000	Cucumber (Gy14) v2	carcgybB0347
Carg03410	MELO3C019608.2	Melon (DHL92) v3.6.1	carmedB0347
Carg03410	CsaV3_6G013330	Cucumber (Chinese Long) v3	carcucB0370
Carg03410	Cla97C02G044780	Watermelon (97103) v2	carwmbB0346
Carg03410	Bhi10G000716	Wax gourd	carwgoB0419

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03410	Silver-seed gourd	carcarB369
Carg03410	Cucurbita maxima (Rimu)	carcmaB0477
Carg03410	Cucurbita maxima (Rimu)	carcmaB0473
Carg03410	Cucurbita moschata (Rifu)	carcmoB0467
Carg03410	Cucurbita pepo (Zucchini)	carcpeB0475