Csa6G091950 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G091950
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	LITAF-domain-containing protein; contains IPR006629 (LPS-induced tumor necrosis factor alpha factor)
Location	Chr6 : 6263177 .. 6264976 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTTTGACTTCGTAATTATTATTTGAATTCCGTTTTCTATCAATTGCTTCAAACAGAGAGAGAGAGACGAAGCTTACCGAGCGAAAATGTCCAAGAACCACGAGCCGGTCGTCGGAGTTCCACTCTATGTCGGCAACAATCCTTATCAGGCCGGCCAGATCCCTCCCAACGCTATTTTTGGCGATCCCCACGGGGTTCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTCAACTGTGTCTATTGTGGAAATTCCGGCCTCACTACCATCAGGTCCCTTTTCTACCTTCTCTCTTCTCTTATATCTTCCTTTCTTTTGATCTGATTTTTCAATTTCTGTGTCTGATTATTCTCTTTTCCTATTTTTGTCCGATGCCTCGGTATCCCTTCGTTTAATTTGTTGTTAATTGATTTGTGAAATTCAGGTACAGTCTTTGACCATTGATATTTTGGATTTCGTTTGTTGAAACATGTATTTGATTGATCAATCATCAATGGGACTTCCTTCCCTTTTTTGTCTTTGACCTAATTTTCTTCTTTAGGACTAGAATCACTTGTACGCGATAAAATTTCTTGGGCAATGAAACCCTGCTTACAGGAGATAAGCAGGAATTGTCTTTGCTCTAACAATGGATTGAAATGAAATGATTTGGAGTGACGTTTACCCAATTTACTCGAGATGTCTTTTATAGTGGATTCAAATTTTTTACTTTTACATAAGATTCTCTCCCTTCTTTACAAATATAATTTACGAGCAATTTGAAACTTTATCATGTTGGGCTTGTCAATTAAATCTAATCTGTTGGTGTCGCATTGAAATTTATTTTCTGTTTATCAACAAAAACTAAGAAAATTACAATAGTAGCATAAACAATAGGTTGTGATGTTACAATGTTAGTTTTTAGTGAGAGCTTCATTTTAAATATAGACCCAAATAGTACGACTGTATTCACTCAAACAAGAATGTCTTGCTTATAAGCTCAAGACTTGTTGTAGCAGGGTATTGCTATGATTTATCATGGTTAGGGAGCAGAAGTTTTTATGTAATTGTTTGTTTAAACAGTTGAATAATTATGCGTCCTCTTCATCTGGTTTTGGTGATCTCCCAGATCAAAGATAAGTTCAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTATAACCATTTCGGGTCCTTGTTCATTCTTTCAGTTGCTTCTTGTAATCAGCATTTTTTTTATTTGAAACTTTGCTCTATTATATAGATAGTTGGAGTAATTGACTGTGCAATCCATTATCCATTTTTTGTTTAGGTTGGTGATTTTGAGAAATTGGATAGATGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTACGCATTGCCTGGTTGATTTTGAGGAGCTACTATTTTCCCGTGTGGTTATTTAGCATCATTTGCATTCAGTACTTGCGATACCCTTGTGCTATTTTTGTGATGTTTTTGTGATGTTTTTGTTACACTTAGGGATAGACACAGTTTGGATATCTTTCCATATATACAATTGTGATAGAGCCAAGTACATGTTTTGTTTTTGGTATCTTACCGCTTGTAAATACCTTGTTCTTACACTGGCATTGCTGTTTATATACATTACTGCTGCTAGCTTAATTTGGACCAAATCTTTCCATAGACCTCTTGATCTTGATCATTCATCTCACAACTGGAAATGGTATGCATTTGTTCAATT

mRNA sequence

ATGTCCAAGAACCACGAGCCGGTCGTCGGAGTTCCACTCTATGTCGGCAACAATCCTTATCAGGCCGGCCAGATCCCTCCCAACGCTATTTTTGGCGATCCCCACGGGGTTCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTCAACTGTGTCTATTGTGGAAATTCCGGCCTCACTACCATCAGATCAAAGATAAGTTCAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATTGGATAGATGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTACGCATTGCCTGGTTGA

Coding sequence (CDS)

ATGTCCAAGAACCACGAGCCGGTCGTCGGAGTTCCACTCTATGTCGGCAACAATCCTTATCAGGCCGGCCAGATCCCTCCCAACGCTATTTTTGGCGATCCCCACGGGGTTCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTCAACTGTGTCTATTGTGGAAATTCCGGCCTCACTACCATCAGATCAAAGATAAGTTCAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATTGGATAGATGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTACGCATTGCCTGGTTGA

Protein sequence

MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPG*

Homology

[Close]

BLAST of Csa6G091950 vs. TrEMBL
Match: A0A0A0KDG7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091950 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 8.2e-79
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of Csa6G091950 vs. TrEMBL
Match: A0A067GTW3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032751mg PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.5e-64
Identity = 109/133 (81.95%), Postives = 119/133 (89.47%), Query Frame = 1


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           M+KN EPVVGVP YVG NPYQ G+IPPNAI GDP G+PIQQT+YRDTPAPF+CVYCGNSG
Sbjct: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           +T +RSK SSAAVVGCMMPF LG+CFLCPSMDCLWHKYHYCPSC EKV +FEK D CAVM
Sbjct: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQ S+ALP
Sbjct: 121 DPPHWTQLSFALP 133

[Close]

BLAST of Csa6G091950 vs. TrEMBL
Match: V4VHJ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033047mg PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.5e-64
Identity = 109/133 (81.95%), Postives = 119/133 (89.47%), Query Frame = 1


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           M+KN EPVVGVP YVG NPYQ G+IPPNAI GDP G+PIQQT+YRDTPAPF+CVYCGNSG
Sbjct: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           +T +RSK SSAAVVGCMMPF LG+CFLCPSMDCLWHKYHYCPSC EKV +FEK D CAVM
Sbjct: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQ S+ALP
Sbjct: 121 DPPHWTQLSFALP 133

[Close]

BLAST of Csa6G091950 vs. TrEMBL
Match: W9RBP2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013174 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.2e-63
Identity = 109/133 (81.95%), Postives = 117/133 (87.97%), Query Frame = 1


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSK  EPVVGVP YV  NPYQAG IPPNA  GDP G+PIQQT+YRDTPAPF+CVYCGNSG
Sbjct: 1   MSKQEEPVVGVPYYVAQNPYQAGAIPPNAFVGDPKGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT++RSK S AAVVGCMMP MLG+CFLCPSMDCLWHKYHYCP+CKEKV DFEK D CAVM
Sbjct: 61  LTSVRSKPSLAAVVGCMMPMMLGICFLCPSMDCLWHKYHYCPNCKEKVADFEKSDVCAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQ S+ALP
Sbjct: 121 DPPHWTQESFALP 133

[Close]

BLAST of Csa6G091950 vs. TrEMBL
Match: B9RFX0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437770 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 8.2e-63
Identity = 107/133 (80.45%), Postives = 115/133 (86.47%), Query Frame = 1


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           M +  EP +GVP YVG NPYQAG IPPNA+FGDP G+PIQQTMYRDTPAPFNCV+CGNSG
Sbjct: 1   MGQKDEPAIGVPYYVGQNPYQAGAIPPNAVFGDPKGIPIQQTMYRDTPAPFNCVFCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT +RSK S AAVVGCMMPFMLG CFLCPSMDCLWHKYHYCP+CKEKV DFEK D C VM
Sbjct: 61  LTLVRSKPSLAAVVGCMMPFMLGFCFLCPSMDCLWHKYHYCPNCKEKVADFEKSDPCLVM 120

Query: 121 DPPHWTQPSYALP 134
           DPP WTQ S+ALP
Sbjct: 121 DPPQWTQQSFALP 133

[Close]

BLAST of Csa6G091950 vs. TAIR10
Match: AT5G13190.1 (AT5G13190.1 LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629))

HSP 1 Score: 221.9 bits (564), Expect = 2.4e-58
Identity = 96/133 (72.18%), Postives = 105/133 (78.95%), Query Frame = 1


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           M+K    V+GVP Y G NPYQAG +PPNAI+GDP G PIQQT+YRDTPAPFNC+YCGN+G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT +RSK   AAVV CMMPFMLG CFLCPSMDCLW+K H+CP C  KV DFEK D C VM
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query: 121 DPPHWTQPSYALP 134
           DPP W QPS+ALP
Sbjct: 121 DPPQWKQPSFALP 133

[Close]

BLAST of Csa6G091950 vs. NCBI nr
Match: gi|449445586|ref|XP_004140553.1| (PREDICTED: uncharacterized protein LOC101221688 [Cucumis sativus])

HSP 1 Score: 300.8 bits (769), Expect = 1.2e-78
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of Csa6G091950 vs. NCBI nr
Match: gi|659119896|ref|XP_008459901.1| (PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo])

HSP 1 Score: 293.5 bits (750), Expect = 1.9e-76
Identity = 131/134 (97.76%), Postives = 131/134 (97.76%), Query Frame = 1


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKNHEPVVGVPLYVGNNPYQAGQIPPN IFGDP GVPIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNPIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of Csa6G091950 vs. NCBI nr
Match: gi|567892627|ref|XP_006438834.1| (hypothetical protein CICLE_v10033047mg [Citrus clementina])

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-63
Identity = 109/133 (81.95%), Postives = 119/133 (89.47%), Query Frame = 1


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           M+KN EPVVGVP YVG NPYQ G+IPPNAI GDP G+PIQQT+YRDTPAPF+CVYCGNSG
Sbjct: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           +T +RSK SSAAVVGCMMPF LG+CFLCPSMDCLWHKYHYCPSC EKV +FEK D CAVM
Sbjct: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQ S+ALP
Sbjct: 121 DPPHWTQLSFALP 133

[Close]

BLAST of Csa6G091950 vs. NCBI nr
Match: gi|703112225|ref|XP_010100062.1| (hypothetical protein L484_013174 [Morus notabilis])

HSP 1 Score: 249.6 bits (636), Expect = 3.1e-63
Identity = 109/133 (81.95%), Postives = 117/133 (87.97%), Query Frame = 1


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSK  EPVVGVP YV  NPYQAG IPPNA  GDP G+PIQQT+YRDTPAPF+CVYCGNSG
Sbjct: 1   MSKQEEPVVGVPYYVAQNPYQAGAIPPNAFVGDPKGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT++RSK S AAVVGCMMP MLG+CFLCPSMDCLWHKYHYCP+CKEKV DFEK D CAVM
Sbjct: 61  LTSVRSKPSLAAVVGCMMPMMLGICFLCPSMDCLWHKYHYCPNCKEKVADFEKSDVCAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQ S+ALP
Sbjct: 121 DPPHWTQESFALP 133

[Close]

BLAST of Csa6G091950 vs. NCBI nr
Match: gi|743819248|ref|XP_011020836.1| (PREDICTED: uncharacterized protein LOC105123069 [Populus euphratica])

HSP 1 Score: 248.4 bits (633), Expect = 6.9e-63
Identity = 109/133 (81.95%), Postives = 115/133 (86.47%), Query Frame = 1


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           M +  +PVVGVP Y G NPYQAG IPPNAI GDP G+PIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MGQQDQPVVGVPYYAGQNPYQAGAIPPNAIVGDPKGIPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           +T +RSK S AAVVGCMMP MLG CFLCPSMDCLWHKYHYCPSCKEKV DFEK D CAVM
Sbjct: 61  VTFVRSKPSLAAVVGCMMPLMLGFCFLCPSMDCLWHKYHYCPSCKEKVADFEKSDPCAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQ S+ALP
Sbjct: 121 DPPHWTQESFALP 133

The following BLAST results are available for this feature:

BLAST of Csa6G091950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDG7_CUCSA	8.2e-79	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091950 PE=4 SV=1	[more]
A0A067GTW3_CITSI	7.5e-64	81.95	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032751mg PE=4 SV=1	[more]
V4VHJ1_9ROSI	7.5e-64	81.95	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033047mg PE=4 SV=1	[more]
W9RBP2_9ROSA	2.2e-63	81.95	Uncharacterized protein OS=Morus notabilis GN=L484_013174 PE=4 SV=1	[more]
B9RFX0_RICCO	8.2e-63	80.45	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437770 PE=4 SV=1	[more]

BLAST of Csa6G091950 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13190.1	2.4e-58	72.18	LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629)	[more]

BLAST of Csa6G091950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445586\|ref\|XP_004140553.1\|	1.2e-78	100.00	PREDICTED: uncharacterized protein LOC101221688 [Cucumis sativus]	[more]
gi\|659119896\|ref\|XP_008459901.1\|	1.9e-76	97.76	PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo]	[more]
gi\|567892627\|ref\|XP_006438834.1\|	1.1e-63	81.95	hypothetical protein CICLE_v10033047mg [Citrus clementina]	[more]
gi\|703112225\|ref\|XP_010100062.1\|	3.1e-63	81.95	hypothetical protein L484_013174 [Morus notabilis]	[more]
gi\|743819248\|ref\|XP_011020836.1\|	6.9e-63	81.95	PREDICTED: uncharacterized protein LOC105123069 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006629	LITAF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034051	negative regulation of plant-type hypersensitive response
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0009646	response to absence of light
biological_process	GO:0009863	salicylic acid mediated signaling pathway
biological_process	GO:0008150	biological_process
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU095986	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G091950.1	Csa6G091950.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU095986	CU095986	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006629	LPS-induced tumour necrosis factor alpha factor	PFAM	PF10601	zf-LITAF-like	coord: 46..110 score: 1.4
IPR006629	LPS-induced tumour necrosis factor alpha factor	SMART	SM00714	litaf	coord: 48..113 score: 1.7
None	No IPR available	PANTHER	PTHR23292	LIPOPOLYSACCHARIDE-INDUCED TRANSCRIPTION FACTOR REGULATING TUMOR NECROSIS FACTOR ALPHA	coord: 7..133 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G091950	Cla001489	Watermelon (97103) v1	cuwmB537
Csa6G091950	MELO3C022346	Melon (DHL92) v3.5.1	cumeB442
Csa6G091950	ClCG06G001820	Watermelon (Charleston Gray)	cuwcgB476
Csa6G091950	Lsi09G017600	Bottle gourd (USVL1VR-Ls)	culsiB402
Csa6G091950	MELO3C022346.2	Melon (DHL92) v3.6.1	cumedB422
Csa6G091950	Cla97C06G111120	Watermelon (97103) v2	cuwmbB468
Csa6G091950	Bhi12G002137	Wax gourd	cuwgoB533
Csa6G091950	CSPI06G07460	Wild cucumber (PI 183967)	cpicuB314
Csa6G091950	Cucsa.349300	Cucumber (Gy14) v1	cgycuB490
Csa6G091950	CmaCh08G000170	Cucurbita maxima (Rimu)	cmacuB903
Csa6G091950	CmaCh17G014120	Cucurbita maxima (Rimu)	cmacuB367
Csa6G091950	CmoCh17G013590	Cucurbita moschata (Rifu)	cmocuB358
Csa6G091950	CmoCh08G000180	Cucurbita moschata (Rifu)	cmocuB889
Csa6G091950	Cp4.1LG17g09340	Cucurbita pepo (Zucchini)	cpecuB322
Csa6G091950	Cp4.1LG12g10000	Cucurbita pepo (Zucchini)	cpecuB142
Csa6G091950	CsGy6G007480	Cucumber (Gy14) v2	cgybcuB282
Csa6G091950	Carg11571	Silver-seed gourd	carcuB0012
Csa6G091950	Carg03814	Silver-seed gourd	carcuB0995

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G091950	Cucurbita pepo (Zucchini)	cpecuB626
Csa6G091950	Cucurbita pepo (Zucchini)	cpecuB874
Csa6G091950	Wax gourd	cuwgoB639