Cp4.1LG12g10000 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g10000
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	LITAF-domain-containing protein
Location	Cp4.1LG12 : 9771331 .. 9774398 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTATTATTTTTTTATTTTTTATTTTTAAGAATATTTTTACGAGAAATTTCGACCCTTTTGCTTCCATCCTAATTCTGCCGTTTCTCGTTTGTTCTCCTTCAACAATTTCATTGACTTCCATTCCAACAACTTTCAGAATCGCCGGCCGAGCAGCACAGAGAAAAAGCTTAGGGAAAATGTCGAAGAACGATGAGCCGGTCGTCGGAATTCCATTCTATGTTGGTAATAACGCTTATCAGGCTGGACAGATCCCTCCGAACGCCATTTTTGGCCATCCCCAGGGAGTTCCTATCCACCAAACCATGTACCGCGACACTCCTGCTCCTTACTGCTGTGTTTATTGTGGAAATTCCGGTCTCACCTCCATCAGGTTCCTTTTCTACCTTCTCTCTGTCTCTGCGTCTAGGTTTTTTTTAAAAAATTTTTAATTTTTTTTTTAAATTTTTGTCTCCTTTCTTTGATCTATTTGAAATTCTGTGTCTAATTAGTCCGGTAGTTGTCTTTTTCTGTTTTAACCGATGATTATCCCATTGTTTGTTTTACTTGAACCGTGAATTCAGGAACGGTTTTGGGCATTGAAATTTTTTACTTCGTTTATTGGAACTTGTATTTGATTGATCAACGGGCCTTCCCCATTTTTGTCTTTCACCTAATTTTCTTCTTTAGGATTAGAATCACTTGTCGCTATTGAATTTTGTGGGTCGTGAAACTTTGCTTACATCATAAGGCAGGAACTGTCTGGTTGTTCCTGCTATGCTCTAACAATTAACTGAAATGATTTGAGTGACTTTTACCCTATATACTCAAAATGTCTTTGAAATAGTTGTTGCTTGGGTGTTTAAGTACACTTCTTCGTTTACATTGGTTTCAAAATCGTCTGACGCCCAACTTTACTGTTGTCCAATAATGTTTTACCAGGTTGTGGTCGTTTTGAGGGATTGCTGTTTGTGTTTGATTTCTTACATAAAACTAATTGGATCAAGGGCAGTTACTTTGTTTTCAAATTTGTATAAACACTCAGTCAGGGCGCAGGTGCAAGGTGGTACAAACTCAGGGGCTCGCAAATGGTTTACACCATACAAAGTTTTGTTTGGCTTTAAATCATTTTCATTTTTAGAAACATTCAAATTGCATACTTTTACATAAGATGCTCCCTTCTTTAAAATAGCATTATTGTTAGTGGGGACACTTGAAATTTTACCATTCAGAACTTATCAATCAATCTAATTTCTTGGTGTGCGTTAAAAATTAATGCTCTGTTCATTCTTTCTTCAACGGCAACAATGAAAATTACAATAATAGCATAAATCAAATAGGTTATCATGTTACAATTTCAGTTTTTAATGAGATTAGCCTAAACAAATATAAGACCAAATGTTGGGATTGTATATACACTGACAAAAATGTTGGTACTCGTATGTTCAAGACTTGCTGTAGCAGAGAACCAATATGATTTATCATGGTTAGGCAGCAAAATTTTGTGTATAATTATCTGGACATAGTAGATATAGGAGGGGAGAGAGGTGGATGTCGTATATTTATGTTAACAGTCAAATAATTATGCCTCTTCATATGGTTGTGATGCTTTCATGATCTCTGCAGATCGAAGATAAGTTTAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGATTGCCTTTGGCATAAGTATCACTATTGTCCCAGCTGCAAGGAAAAGGTATGACTATTTCCTGTCATTTTTAATTCTTTCAGTTGCTTCTTCTCATCTGCATATTGGTTATTTGAGACTTTGCTCTATTATGGATAATTGGAGTAATTAATGATACTATCATATTTCCTTAGGTTGGTGATTTTGAGAAATCGGATGTGTGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTTTGCATTGCCTGCCTGATTTTTACGAGCTGCTAGTTTATCGTGTGGCTATTTTGCATTGTCTGCAGTCAGTATTTGCTATACTCTTGTGCTATTTGATAGAACCAAGTACATGTTTTTTATTTGCTATACTCTTGTGCTGTTTTTGAGATGTTCTTGTTACAATTAGGGATAGGCAAGGTTTGGATACAATTGTGATAGAATCAAGTACATGTTTTTCTATAACTTACCGCTTGTAAATACCTTGTTCTTACATTGGCATTGTTGTTTATATATAATACCGCTAGCTTAGTCTAGAGGAATCATTTCATAGACCTCTTGATCATTCACCTCATAAGTTGAAATGGTATGCGTTTGTTCAATTAATTTCCCGTTGCCATTCACTATCTGCATCTCCTGACACCATTTGTTCTAACCTCCCTCAAATTACATTTTGAGCATGCACCTCATCATCTGGATGAATCAACGATGGGATTTTCTTTTTCTTCTTTATTTGGCTATCGATATCGAAATGAAGTCGAGCATAATAGATGGTTTGCTATTGCCTGCTTGGTTTTGAGGGGACTTGGATTCTGATGAGGGATGATGATCTGGGATCACGCAAGTAAACAATGAGAAACATCTCGGAAAAGATGGTATACCTGAGTTCAAGGGGGTCTTGCCCAGATGCAGATGTAGAGAAAGACAATCGAAGTCGATTGCAGAGGTTTTCAATCTGGAAGCGAAAGTTCGGCATGGGAAATAAGAGCCGGTCTCGATAGCCAAAGAGACTGCCTGCATGAGTATGCCATTGCAGGGGGCAGCTTTTTACAGATCCCTTCATGAAGTTGCAGGCTGCAGGCAAGTCATCCTTGGCTACAGTACATGACTCTCCATTCCCATGTTGAACCTTTCCTTCCTTCCTCATAAATCAGGTAGAATTAAAGCCTCTCCTCGTATGTTGAAGGCGAGAGTGCAGTCCATTCCTTTTGAAGCAAAAGGAGACATTAGGTATGTATGTATGTATGTATGTTTTCATTGGAGTTTGGGTTATAAGTTAAAATTAGGAGCAGCCCCACCCACAACAATATACTGCACTCTACACTCACCGAGGTTTCTGTCTCGGAATATATTCTGTATAATTCGACTTACAAAATTTGTGTTGGCT

mRNA sequence

CTTTATTATTTTTTTATTTTTTATTTTTAAGAATATTTTTACGAGAAATTTCGACCCTTTTGCTTCCATCCTAATTCTGCCGTTTCTCGTTTGTTCTCCTTCAACAATTTCATTGACTTCCATTCCAACAACTTTCAGAATCGCCGGCCGAGCAGCACAGAGAAAAAGCTTAGGGAAAATGTCGAAGAACGATGAGCCGGTCGTCGGAATTCCATTCTATGTTGGTAATAACGCTTATCAGGCTGGACAGATCCCTCCGAACGCCATTTTTGGCCATCCCCAGGGAGTTCCTATCCACCAAACCATGTACCGCGACACTCCTGCTCCTTACTGCTGTGTTTATTGTGGAAATTCCGGTCTCACCTCCATCAGATCGAAGATAAGTTTAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGATTGCCTTTGGCATAAGTATCACTATTGTCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATCGGATGTGTGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTTTGCATTGCCTGCCTGATTTTTACGAGCTGCTAGTTTATCGTGTGGCTATTTTGCATTGTCTGCAGGATAGGCAAGGTTTGGATACAATTGTGATAGAATCAAGCACCTCATCATCTGGATGAATCAACGATGGGATTTTCTTTTTCTTCTTTATTTGGCTATCGATATCGAAATGAAGTCGAGCATAATAGATGGTTTGCTATTGCCTGCTTGGTTTTGAGGGGACTTGGATTCTGATGAGGGATGATGATCTGGGATCACGCAAGTAAACAATGAGAAACATCTCGGAAAAGATGGTATACCTGAGTTCAAGGGGGTCTTGCCCAGATGCAGATGTAGAGAAAGACAATCGAAGTCGATTGCAGAGGTTTTCAATCTGGAAGCGAAAGTTCGGCATGGGAAATAAGAGCCGGTCTCGATAGCCAAAGAGACTGCCTGCATGAGTATGCCATTGCAGGGGGCAGCTTTTTACAGATCCCTTCATGAAGTTGCAGGCTGCAGGCAAGTCATCCTTGGCTACAGTACATGACTCTCCATTCCCATGTTGAACCTTTCCTTCCTTCCTCATAAATCAGGTAGAATTAAAGCCTCTCCTCGTATGTTGAAGGCGAGAGTGCAGTCCATTCCTTTTGAAGCAAAAGGAGACATTAGGTATGTATGTATGTATGTATGTTTTCATTGGAGTTTGGGTTATAAGTTAAAATTAGGAGCAGCCCCACCCACAACAATATACTGCACTCTACACTCACCGAGGTTTCTGTCTCGGAATATATTCTGTATAATTCGACTTACAAAATTTGTGTTGGCT

Coding sequence (CDS)

ATGTCGAAGAACGATGAGCCGGTCGTCGGAATTCCATTCTATGTTGGTAATAACGCTTATCAGGCTGGACAGATCCCTCCGAACGCCATTTTTGGCCATCCCCAGGGAGTTCCTATCCACCAAACCATGTACCGCGACACTCCTGCTCCTTACTGCTGTGTTTATTGTGGAAATTCCGGTCTCACCTCCATCAGATCGAAGATAAGTTTAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGATTGCCTTTGGCATAAGTATCACTATTGTCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATCGGATGTGTGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTTTGCATTGCCTGCCTGA

Protein sequence

MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA

Homology

[Close]

BLAST of Cp4.1LG12g10000 vs. TrEMBL
Match: A0A0A0KDG7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091950 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-68
Identity = 119/133 (89.47%), Postives = 123/133 (92.48%), Query Frame = 1


Query: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60
           MSKN EPVVG+P YVGNN YQAGQIPPNAIFG P GVPI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120
           LT+IRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK D CAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSFALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSYALP 133

[Close]

BLAST of Cp4.1LG12g10000 vs. TrEMBL
Match: W9RBP2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013174 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-64
Identity = 110/134 (82.09%), Postives = 120/134 (89.55%), Query Frame = 1


Query: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60
           MSK +EPVVG+P+YV  N YQAG IPPNA  G P+G+PI QT+YRDTPAP+ CVYCGNSG
Sbjct: 1   MSKQEEPVVGVPYYVAQNPYQAGAIPPNAFVGDPKGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120
           LTS+RSK SLAAVVGCMMP MLG+CFLCPSMDCLWHKYHYCP+CKEKV DFEKSDVCAVM
Sbjct: 61  LTSVRSKPSLAAVVGCMMPMMLGICFLCPSMDCLWHKYHYCPNCKEKVADFEKSDVCAVM 120

Query: 121 DPPHWTQPSFALPA 135
           DPPHWTQ SFALPA
Sbjct: 121 DPPHWTQESFALPA 134

[Close]

BLAST of Cp4.1LG12g10000 vs. TrEMBL
Match: A0A067GTW3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032751mg PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-63
Identity = 107/134 (79.85%), Postives = 118/134 (88.06%), Query Frame = 1


Query: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60
           M+KNDEPVVG+PFYVG N YQ G+IPPNAI G P G+PI QT+YRDTPAP+ CVYCGNSG
Sbjct: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120
           +T +RSK S AAVVGCMMPF LG+CFLCPSMDCLWHKYHYCPSC EKV +FEK D+CAVM
Sbjct: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120

Query: 121 DPPHWTQPSFALPA 135
           DPPHWTQ SFALPA
Sbjct: 121 DPPHWTQLSFALPA 134

[Close]

BLAST of Cp4.1LG12g10000 vs. TrEMBL
Match: V4VHJ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033047mg PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-63
Identity = 107/134 (79.85%), Postives = 118/134 (88.06%), Query Frame = 1


Query: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60
           M+KNDEPVVG+PFYVG N YQ G+IPPNAI G P G+PI QT+YRDTPAP+ CVYCGNSG
Sbjct: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120
           +T +RSK S AAVVGCMMPF LG+CFLCPSMDCLWHKYHYCPSC EKV +FEK D+CAVM
Sbjct: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120

Query: 121 DPPHWTQPSFALPA 135
           DPPHWTQ SFALPA
Sbjct: 121 DPPHWTQLSFALPA 134

[Close]

BLAST of Cp4.1LG12g10000 vs. TrEMBL
Match: A9P9Z3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16430g PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.7e-63
Identity = 108/134 (80.60%), Postives = 117/134 (87.31%), Query Frame = 1


Query: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60
           M + D+PVVG+P+Y G N YQAG IPPNAI G P+G+PI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MGQQDQPVVGVPYYAGQNPYQAGAIPPNAIVGDPKGIPIQQTMYRDTPAPFSCVYCGNSG 60

Query: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120
           +T +RSK SLAAVVGCMMP MLG CFLCPSMDCLWHKYHYCPSCKEKV DFEKSD CAVM
Sbjct: 61  VTFVRSKPSLAAVVGCMMPLMLGFCFLCPSMDCLWHKYHYCPSCKEKVADFEKSDPCAVM 120

Query: 121 DPPHWTQPSFALPA 135
           DPPHWTQ SFALPA
Sbjct: 121 DPPHWTQESFALPA 134

[Close]

BLAST of Cp4.1LG12g10000 vs. TAIR10
Match: AT5G13190.1 (AT5G13190.1 LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629))

HSP 1 Score: 218.0 bits (554), Expect = 3.5e-57
Identity = 93/134 (69.40%), Postives = 108/134 (80.60%), Query Frame = 1


Query: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60
           M+K    V+G+P+Y G N YQAG +PPNAI+G P G PI QT+YRDTPAP+ C+YCGN+G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120
           LT++RSK  +AAVV CMMPFMLG CFLCPSMDCLW+K H+CP C  KV DFEKSD C VM
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query: 121 DPPHWTQPSFALPA 135
           DPP W QPSFALPA
Sbjct: 121 DPPQWKQPSFALPA 134

[Close]

BLAST of Cp4.1LG12g10000 vs. NCBI nr
Match: gi|659119896|ref|XP_008459901.1| (PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 3.8e-69
Identity = 120/133 (90.23%), Postives = 124/133 (93.23%), Query Frame = 1


Query: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60
           MSKN EPVVG+P YVGNN YQAGQIPPN IFG PQGVPI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNPIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120
           LT+IRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK D CAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSFALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSYALP 133

[Close]

BLAST of Cp4.1LG12g10000 vs. NCBI nr
Match: gi|449445586|ref|XP_004140553.1| (PREDICTED: uncharacterized protein LOC101221688 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 1.9e-68
Identity = 119/133 (89.47%), Postives = 123/133 (92.48%), Query Frame = 1


Query: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60
           MSKN EPVVG+P YVGNN YQAGQIPPNAIFG P GVPI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120
           LT+IRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK D CAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSFALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSYALP 133

[Close]

BLAST of Cp4.1LG12g10000 vs. NCBI nr
Match: gi|703112225|ref|XP_010100062.1| (hypothetical protein L484_013174 [Morus notabilis])

HSP 1 Score: 253.8 bits (647), Expect = 1.6e-64
Identity = 110/134 (82.09%), Postives = 120/134 (89.55%), Query Frame = 1


Query: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60
           MSK +EPVVG+P+YV  N YQAG IPPNA  G P+G+PI QT+YRDTPAP+ CVYCGNSG
Sbjct: 1   MSKQEEPVVGVPYYVAQNPYQAGAIPPNAFVGDPKGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120
           LTS+RSK SLAAVVGCMMP MLG+CFLCPSMDCLWHKYHYCP+CKEKV DFEKSDVCAVM
Sbjct: 61  LTSVRSKPSLAAVVGCMMPMMLGICFLCPSMDCLWHKYHYCPNCKEKVADFEKSDVCAVM 120

Query: 121 DPPHWTQPSFALPA 135
           DPPHWTQ SFALPA
Sbjct: 121 DPPHWTQESFALPA 134

[Close]

BLAST of Cp4.1LG12g10000 vs. NCBI nr
Match: gi|567892627|ref|XP_006438834.1| (hypothetical protein CICLE_v10033047mg [Citrus clementina])

HSP 1 Score: 250.4 bits (638), Expect = 1.8e-63
Identity = 107/134 (79.85%), Postives = 118/134 (88.06%), Query Frame = 1


Query: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60
           M+KNDEPVVG+PFYVG N YQ G+IPPNAI G P G+PI QT+YRDTPAP+ CVYCGNSG
Sbjct: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120
           +T +RSK S AAVVGCMMPF LG+CFLCPSMDCLWHKYHYCPSC EKV +FEK D+CAVM
Sbjct: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120

Query: 121 DPPHWTQPSFALPA 135
           DPPHWTQ SFALPA
Sbjct: 121 DPPHWTQLSFALPA 134

[Close]

BLAST of Cp4.1LG12g10000 vs. NCBI nr
Match: gi|224072502|ref|XP_002303762.1| (hypothetical protein POPTR_0003s16430g [Populus trichocarpa])

HSP 1 Score: 248.8 bits (634), Expect = 5.3e-63
Identity = 108/134 (80.60%), Postives = 117/134 (87.31%), Query Frame = 1


Query: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60
           M + D+PVVG+P+Y G N YQAG IPPNAI G P+G+PI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MGQQDQPVVGVPYYAGQNPYQAGAIPPNAIVGDPKGIPIQQTMYRDTPAPFSCVYCGNSG 60

Query: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120
           +T +RSK SLAAVVGCMMP MLG CFLCPSMDCLWHKYHYCPSCKEKV DFEKSD CAVM
Sbjct: 61  VTFVRSKPSLAAVVGCMMPLMLGFCFLCPSMDCLWHKYHYCPSCKEKVADFEKSDPCAVM 120

Query: 121 DPPHWTQPSFALPA 135
           DPPHWTQ SFALPA
Sbjct: 121 DPPHWTQESFALPA 134

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g10000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG12g10000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDG7_CUCSA	1.3e-68	89.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091950 PE=4 SV=1	[more]
W9RBP2_9ROSA	1.1e-64	82.09	Uncharacterized protein OS=Morus notabilis GN=L484_013174 PE=4 SV=1	[more]
A0A067GTW3_CITSI	1.3e-63	79.85	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032751mg PE=4 SV=1	[more]
V4VHJ1_9ROSI	1.3e-63	79.85	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033047mg PE=4 SV=1	[more]
A9P9Z3_POPTR	3.7e-63	80.60	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16430g PE=2 SV=1	[more]

BLAST of Cp4.1LG12g10000 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13190.1	3.5e-57	69.40	LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629)	[more]

BLAST of Cp4.1LG12g10000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119896\|ref\|XP_008459901.1\|	3.8e-69	90.23	PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo]	[more]
gi\|449445586\|ref\|XP_004140553.1\|	1.9e-68	89.47	PREDICTED: uncharacterized protein LOC101221688 [Cucumis sativus]	[more]
gi\|703112225\|ref\|XP_010100062.1\|	1.6e-64	82.09	hypothetical protein L484_013174 [Morus notabilis]	[more]
gi\|567892627\|ref\|XP_006438834.1\|	1.8e-63	79.85	hypothetical protein CICLE_v10033047mg [Citrus clementina]	[more]
gi\|224072502\|ref\|XP_002303762.1\|	5.3e-63	80.60	hypothetical protein POPTR_0003s16430g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006629	LITAF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034051	negative regulation of plant-type hypersensitive response
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0009646	response to absence of light
biological_process	GO:0009863	salicylic acid mediated signaling pathway
biological_process	GO:0008150	biological_process
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g10000.1	Cp4.1LG12g10000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006629	LPS-induced tumour necrosis factor alpha factor	PFAM	PF10601	zf-LITAF-like	coord: 47..110 score: 2.7
IPR006629	LPS-induced tumour necrosis factor alpha factor	SMART	SM00714	litaf	coord: 48..113 score: 4.9
None	No IPR available	PANTHER	PTHR23292	LIPOPOLYSACCHARIDE-INDUCED TRANSCRIPTION FACTOR REGULATING TUMOR NECROSIS FACTOR ALPHA	coord: 12..134 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG12g10000	Cucsa.349300	Cucumber (Gy14) v1	cgycpeB0907
Cp4.1LG12g10000	CmaCh17G014120	Cucurbita maxima (Rimu)	cmacpeB371
Cp4.1LG12g10000	CmaCh08G000170	Cucurbita maxima (Rimu)	cmacpeB905
Cp4.1LG12g10000	CmoCh08G000180	Cucurbita moschata (Rifu)	cmocpeB841
Cp4.1LG12g10000	CmoCh17G013590	Cucurbita moschata (Rifu)	cmocpeB335
Cp4.1LG12g10000	Cla001489	Watermelon (97103) v1	cpewmB156
Cp4.1LG12g10000	Csa6G091950	Cucumber (Chinese Long) v2	cpecuB142
Cp4.1LG12g10000	MELO3C022346	Melon (DHL92) v3.5.1	cpemeB114
Cp4.1LG12g10000	ClCG06G001820	Watermelon (Charleston Gray)	cpewcgB140
Cp4.1LG12g10000	CSPI06G07460	Wild cucumber (PI 183967)	cpecpiB144
Cp4.1LG12g10000	Lsi09G017600	Bottle gourd (USVL1VR-Ls)	cpelsiB103
Cp4.1LG12g10000	MELO3C022346.2	Melon (DHL92) v3.6.1	cpemedB140
Cp4.1LG12g10000	CsaV3_6G007860	Cucumber (Chinese Long) v3	cpecucB0166
Cp4.1LG12g10000	Bhi12G002137	Wax gourd	cpewgoB0175
Cp4.1LG12g10000	CsGy6G007480	Cucumber (Gy14) v2	cgybcpeB722
Cp4.1LG12g10000	Carg03814	Silver-seed gourd	carcpeB1355
Cp4.1LG12g10000	Carg11571	Silver-seed gourd	carcpeB0018

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG12g10000	Cp4.1LG17g09340	Cucurbita pepo (Zucchini)	cpecpeB170

The following block(s) are covering this gene:

None