CsGy6G007480 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G007480
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Zf-LITAF-like domain-containing protein
Location	Chr6 : 6325748 .. 6327712 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTAAACCAATAAGAGCGAAGAATATATTTTTCTTTCTAAATAAAATATGGGTTTTGACTTCGTAATTATTATTTGAATTCCGTTTTCTATCAATTGCTTCAAACAGAGAGAGAGAGACGAAGCTTACCGAGCGAAAATGTCCAAGAACCACGAGCCGGTCGTCGGAGTTCCACTCTATGTCGGCAACAATCCTTATCAGGCCGGCCAGATCCCTCCCAACGCTATTTTTGGCGATCCCCACGGGGTTCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTCAACTGTGTCTATTGTGGAAATTCCGGCCTCACTACCATCAGGTCCCTTTTCTACCTTCTCTCTTCTCTTATATCTTCCTTTCTTTTGATCTGATTTTTCAATTTCTGTGTCTGATTATTCTCTTTTCCTATTTTTGTCCGATGCCTCGGTATCCCTTCGTTTAATTTGTTGTTAATTGATTTGTGAAATTCAGGTACAGTCTTTGACCATTGATATTTTGGATTTCGTTTGTTGAAACATGTATTTGATTGATCAATCATCAATGGGACTTCCTTCCCTTTTTTGTCTTTGACCTAATTTTCTTCTTTAGGACTAGAATCACTTGTACGCGATAAAATTTCTTGGGCAATGAAACCCTGCTTACAGGAGATAAGCAGGAATTGTCTTTGCTCTAACAATGGATTGAAATGAAATGATTTGGAGTGACGTTTACCCAATTTACTCGAGATGTCTTTTATAGTGGATTCAAATTTTTTACTTTTACATAAGATTCTCTCCCTTCTTTACAAATATAATTTACGAGCAATTTGAAACTTTATCATGTTGGGCTTGTCAATTAAATCTAATCTGTTGGTGTCGCATTGAAATTTATTTTCTGTTTATCAACAAAAACTAAGAAAATTACAATAGTAGCATAAACAATAGGTTGTGATGTTACAATGTTAGTTTTTAGTGAGAGCTTCATTTTAAATATAGACCCAAATAGTACGACTGTATTCACTCAAACAAGAATGTCTTGCTTATAAGCTCAAGACTTGTTGTAGCAGGGTATTGCTATGATTTATCATGGTTAGGGAGCAGAAGTTTTTATGTAATTGTTTGTTTAAACAGTTGAATAATTATGCGTCCTCTTCATCTGGTTTTGGTGATCTCCCAGATCAAAGATAAGTTCAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTATAACCATTTCGGGTCCTTGTTCATTCTTTCAGTTGCTTCTTGTAATCAGCATTTTTTTTATTTGAAACTTTGCTCTATTATATAGATAGTTGGAGTAATTGACTGTGCAATCCATTATCCATTTTTTGTTTAGGTTGGTGATTTTGAGAAATTGGATAGATGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTACGCATTGCCTGGTTGATTTTGAGGAGCTACTATTTTCCCGTGTGGTTATTTAGCATCATTTGCATTCAGTACTTGCGATACCCTTGTGCTATTTTTGTGATGTTTTTGTGATGTTTTTGTGATGTTTTTGTTACACTTAGGGATAGACACAGTTTGGATATCTTTCCATATATACAATTGTGATAGAGCCAAGTACATGTTTTGTTTTTGGTATCTTACCGCTTGTAAATACCTTGTTCTTACACTGGCATTGCTGTTTATATACATTACTGCTGCTAGCTTAATTTGGACCAAATCTTTCCATAGACCTCTTGATCTTGATCATTCATCTCACAACTGGAAATGGTATGCATTTGTTCAATTCATTTCCTTGAATCATCCATGTGGCTTTCTTTTTCTTCTTGATTTGTTTATCGAAACAAATTCAAAAGCAAATATGGGTTGCCATAGCCTGCTTGAATTCTGA

mRNA sequence

GTGTAAACCAATAAGAGCGAAGAATATATTTTTCTTTCTAAATAAAATATGGGTTTTGACTTCGTAATTATTATTTGAATTCCGTTTTCTATCAATTGCTTCAAACAGAGAGAGAGAGACGAAGCTTACCGAGCGAAAATGTCCAAGAACCACGAGCCGGTCGTCGGAGTTCCACTCTATGTCGGCAACAATCCTTATCAGGCCGGCCAGATCCCTCCCAACGCTATTTTTGGCGATCCCCACGGGGTTCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTCAACTGTGTCTATTGTGGAAATTCCGGCCTCACTACCATCAGATCAAAGATAAGTTCAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATTGGATAGATGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTACGCATTGCCTGGGATAGACACAGTTTGGATATCTTTCCATATATACAATTGTGATAGAGCCAAGTACATGTTTTGTTTTTGGTATCTTACCGCTTGTAAATACCTTGTTCTTACACTGGCATTGCTGTTTATATACATTACTGCTGCTAGCTTAATTTGGACCAAATCTTTCCATAGACCTCTTGATCTTGATCATTCATCTCACAACTGGAAATGGTATGCATTTGTTCAATTCATTTCCTTGAATCATCCATGTGGCTTTCTTTTTCTTCTTGATTTGTTTATCGAAACAAATTCAAAAGCAAATATGGGTTGCCATAGCCTGCTTGAATTCTGA

Coding sequence (CDS)

ATGTCCAAGAACCACGAGCCGGTCGTCGGAGTTCCACTCTATGTCGGCAACAATCCTTATCAGGCCGGCCAGATCCCTCCCAACGCTATTTTTGGCGATCCCCACGGGGTTCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTCAACTGTGTCTATTGTGGAAATTCCGGCCTCACTACCATCAGATCAAAGATAAGTTCAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATTGGATAGATGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTACGCATTGCCTGGGATAGACACAGTTTGGATATCTTTCCATATATACAATTGTGATAGAGCCAAGTACATGTTTTGTTTTTGGTATCTTACCGCTTGTAAATACCTTGTTCTTACACTGGCATTGCTGTTTATATACATTACTGCTGCTAGCTTAATTTGGACCAAATCTTTCCATAGACCTCTTGATCTTGATCATTCATCTCACAACTGGAAATGGTATGCATTTGTTCAATTCATTTCCTTGAATCATCCATGTGGCTTTCTTTTTCTTCTTGATTTGTTTATCGAAACAAATTCAAAAGCAAATATGGGTTGCCATAGCCTGCTTGAATTCTGA

Protein sequence

MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSGLTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVMDPPHWTQPSYALPGIDTVWISFHIYNCDRAKYMFCFWYLTACKYLVLTLALLFIYITAASLIWTKSFHRPLDLDHSSHNWKWYAFVQFISLNHPCGFLFLLDLFIETNSKANMGCHSLLEF

Homology

[Close]

BLAST of CsGy6G007480 vs. NCBI nr
Match: XP_004140553.1 (PREDICTED: uncharacterized protein LOC101221688 [Cucumis sativus] >KGN46422.1 hypothetical protein Csa_6G091950 [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 2.4e-78
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of CsGy6G007480 vs. NCBI nr
Match: XP_008459901.1 (PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo])

HSP 1 Score: 294.3 bits (752), Expect = 3.8e-76
Identity = 131/134 (97.76%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKNHEPVVGVPLYVGNNPYQAGQIPPN IFGDP GVPIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNPIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of CsGy6G007480 vs. NCBI nr
Match: XP_022991744.1 (GSH-induced LITAF domain protein [Cucurbita maxima])

HSP 1 Score: 268.5 bits (685), Expect = 2.2e-68
Identity = 119/133 (89.47%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKN EPVVG+P YVGNN YQAGQIPPNAIFG P GVPI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MSKNDEPVVGIPFYVGNNSYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT+IRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK D CAVM
Sbjct: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDACAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSFALP 133

[Close]

BLAST of CsGy6G007480 vs. NCBI nr
Match: XP_022954275.1 (GSH-induced LITAF domain protein [Cucurbita moschata] >XP_023547364.1 GSH-induced LITAF domain protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 267.7 bits (683), Expect = 3.8e-68
Identity = 119/133 (89.47%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKN EPVVG+P YVGNN YQAGQIPPNAIFG P GVPI QTMYRDTPAP+ CVYCGNSG
Sbjct: 1   MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT+IRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK D CAVM
Sbjct: 61  LTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSFALP 133

[Close]

BLAST of CsGy6G007480 vs. NCBI nr
Match: XP_022148974.1 (GSH-induced LITAF domain protein [Momordica charantia])

HSP 1 Score: 263.5 bits (672), Expect = 7.2e-67
Identity = 115/133 (86.47%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKN EPVVG+PLY G+N YQAGQIP NAI+GDP GVPIQQTM+RDTPAPF C+YCGNSG
Sbjct: 1   MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT++RSKISSAAVVGCM+PFMLGVCFL PSM+CLWHKYHYCP+CKEKVGDFEKLDRCAVM
Sbjct: 61  LTSVRSKISSAAVVGCMVPFMLGVCFLFPSMNCLWHKYHYCPNCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQPS+ALP
Sbjct: 121 DPPHWTQPSFALP 133

[Close]

BLAST of CsGy6G007480 vs. TAIR10
Match: AT5G13190.1 (LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629))

HSP 1 Score: 222.6 bits (566), Expect = 2.6e-58
Identity = 96/133 (72.18%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           M+K    V+GVP Y G NPYQAG +PPNAI+GDP G PIQQT+YRDTPAPFNC+YCGN+G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT +RSK   AAVV CMMPFMLG CFLCPSMDCLW+K H+CP C  KV DFEK D C VM
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query: 121 DPPHWTQPSYALP 134
           DPP W QPS+ALP
Sbjct: 121 DPPQWKQPSFALP 133

[Close]

BLAST of CsGy6G007480 vs. Swiss-Prot
Match: sp|Q94CD4|GILP_ARATH (GSH-induced LITAF domain protein OS=Arabidopsis thaliana OX=3702 GN=GILP PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.6e-57
Identity = 96/133 (72.18%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           M+K    V+GVP Y G NPYQAG +PPNAI+GDP G PIQQT+YRDTPAPFNC+YCGN+G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LT +RSK   AAVV CMMPFMLG CFLCPSMDCLW+K H+CP C  KV DFEK D C VM
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query: 121 DPPHWTQPSYALP 134
           DPP W QPS+ALP
Sbjct: 121 DPPQWKQPSFALP 133

[Close]

BLAST of CsGy6G007480 vs. TrEMBL
Match: tr|A0A0A0KDG7|A0A0A0KDG7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091950 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.6e-78
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of CsGy6G007480 vs. TrEMBL
Match: tr|A0A1S3CCH3|A0A1S3CCH3_CUCME (uncharacterized protein LOC103498881 OS=Cucumis melo OX=3656 GN=LOC103498881 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.5e-76
Identity = 131/134 (97.76%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           MSKNHEPVVGVPLYVGNNPYQAGQIPPN IFGDP GVPIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNPIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           LTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPPHWTQPSYALPG 135
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

[Close]

BLAST of CsGy6G007480 vs. TrEMBL
Match: tr|A0A2H5N9D1|A0A2H5N9D1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_024690 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.4e-63
Identity = 109/133 (81.95%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           M+KN EPVVGVP YVG NPYQ G+IPPNAI GDP G+PIQQT+YRDTPAPF+CVYCGNSG
Sbjct: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           +T +RSK SSAAVVGCMMPF LG+CFLCPSMDCLWHKYHYCPSC EKV +FEK D CAVM
Sbjct: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQ S+ALP
Sbjct: 121 DPPHWTQLSFALP 133

[Close]

BLAST of CsGy6G007480 vs. TrEMBL
Match: tr|V4VHJ1|V4VHJ1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033047mg PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.4e-63
Identity = 109/133 (81.95%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           M+KN EPVVGVP YVG NPYQ G+IPPNAI GDP G+PIQQT+YRDTPAPF+CVYCGNSG
Sbjct: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           +T +RSK SSAAVVGCMMPF LG+CFLCPSMDCLWHKYHYCPSC EKV +FEK D CAVM
Sbjct: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQ S+ALP
Sbjct: 121 DPPHWTQLSFALP 133

[Close]

BLAST of CsGy6G007480 vs. TrEMBL
Match: tr|A0A067GTW3|A0A067GTW3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032751mg PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.4e-63
Identity = 109/133 (81.95%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60
           M+KN EPVVGVP YVG NPYQ G+IPPNAI GDP G+PIQQT+YRDTPAPF+CVYCGNSG
Sbjct: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120
           +T +RSK SSAAVVGCMMPF LG+CFLCPSMDCLWHKYHYCPSC EKV +FEK D CAVM
Sbjct: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120

Query: 121 DPPHWTQPSYALP 134
           DPPHWTQ S+ALP
Sbjct: 121 DPPHWTQLSFALP 133

The following BLAST results are available for this feature:

BLAST of CsGy6G007480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140553.1	2.4e-78	100.00	PREDICTED: uncharacterized protein LOC101221688 [Cucumis sativus] >KGN46422.1 hy...	[more]
XP_008459901.1	3.8e-76	97.76	PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo]	[more]
XP_022991744.1	2.2e-68	89.47	GSH-induced LITAF domain protein [Cucurbita maxima]	[more]
XP_022954275.1	3.8e-68	89.47	GSH-induced LITAF domain protein [Cucurbita moschata] >XP_023547364.1 GSH-induce...	[more]
XP_022148974.1	7.2e-67	86.47	GSH-induced LITAF domain protein [Momordica charantia]	[more]

BLAST of CsGy6G007480 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13190.1	2.6e-58	72.18	LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629)	[more]

BLAST of CsGy6G007480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94CD4\|GILP_ARATH	4.6e-57	72.18	GSH-induced LITAF domain protein OS=Arabidopsis thaliana OX=3702 GN=GILP PE=1 SV...	[more]

BLAST of CsGy6G007480 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KDG7\|A0A0A0KDG7_CUCSA	1.6e-78	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091950 PE=4 SV=1	[more]
tr\|A0A1S3CCH3\|A0A1S3CCH3_CUCME	2.5e-76	97.76	uncharacterized protein LOC103498881 OS=Cucumis melo OX=3656 GN=LOC103498881 PE=...	[more]
tr\|A0A2H5N9D1\|A0A2H5N9D1_CITUN	1.4e-63	81.95	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_024690 PE=4 SV=1	[more]
tr\|V4VHJ1\|V4VHJ1_9ROSI	1.4e-63	81.95	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033047mg PE=4 ...	[more]
tr\|A0A067GTW3\|A0A067GTW3_CITSI	1.4e-63	81.95	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032751mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR037519	LITAF_fam
IPR006629	LITAF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G007480.1	CsGy6G007480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006629	LPS-induced tumour necrosis factor alpha factor	SMART	SM00714	litaf	coord: 48..113 e-value: 1.7E-13 score: 60.8
IPR006629	LPS-induced tumour necrosis factor alpha factor	PFAM	PF10601	zf-LITAF-like	coord: 46..110 e-value: 3.8E-12 score: 46.2
IPR006629	LPS-induced tumour necrosis factor alpha factor	PROSITE	PS51837	LITAF	coord: 33..113 score: 11.195
IPR037519	LITAF domain containing protein	PANTHER	PTHR23292	LIPOPOLYSACCHARIDE-INDUCED TRANSCRIPTION FACTOR REGULATING TUMOR NECROSIS FACTOR ALPHA	coord: 37..112
None	No IPR available	PANTHER	PTHR23292:SF6	FI16615P1-RELATED	coord: 37..112

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G007480	Cla001489	Watermelon (97103) v1	cgybwmB501
CsGy6G007480	Csa6G091950	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G007480	MELO3C022346	Melon (DHL92) v3.5.1	cgybmeB379
CsGy6G007480	ClCG06G001820	Watermelon (Charleston Gray)	cgybwcgB438
CsGy6G007480	CSPI06G07460	Wild cucumber (PI 183967)	cgybcpiB288
CsGy6G007480	CmaCh17G014120	Cucurbita maxima (Rimu)	cgybcmaB751
CsGy6G007480	CmaCh08G000170	Cucurbita maxima (Rimu)	cgybcmaB871
CsGy6G007480	CmoCh17G013590	Cucurbita moschata (Rifu)	cgybcmoB734
CsGy6G007480	CmoCh08G000180	Cucurbita moschata (Rifu)	cgybcmoB853
CsGy6G007480	Lsi09G017600	Bottle gourd (USVL1VR-Ls)	cgyblsiB366
CsGy6G007480	Cp4.1LG17g09340	Cucurbita pepo (Zucchini)	cgybcpeB783
CsGy6G007480	Cp4.1LG12g10000	Cucurbita pepo (Zucchini)	cgybcpeB722
CsGy6G007480	MELO3C022346.2	Melon (DHL92) v3.6.1	cgybmedB381
CsGy6G007480	CsaV3_6G007860	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G007480	Cla97C06G111120	Watermelon (97103) v2	cgybwmbB446
CsGy6G007480	Bhi12G002137	Wax gourd	cgybwgoB509
CsGy6G007480	Carg11571	Silver-seed gourd	carcgybB0011
CsGy6G007480	Carg03814	Silver-seed gourd	carcgybB0968

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G007480	Cucurbita moschata (Rifu)	cgybcmoB693
CsGy6G007480	Cucurbita pepo (Zucchini)	cgybcpeB816
CsGy6G007480	Cucurbita pepo (Zucchini)	cgybcpeB831