CmaCh08G000170 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G000170
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	LITAF-domain-containing protein
Location	Cma_Chr08 : 99169 .. 101714 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGCCAAACCTAAACCAATTTTCTTACGCCAAATTTCTCCTCTTCCCTTCCATTGTAATCCTCCCCTACCGCCGTTTTTCGTTTTTCCGATTCGCCGTCGGACCACCACAGGGAAAAACCTTTCCAAACATGTCCAAGGACGACACCCCGGTCGTCGGAACTCAGGTCGGAAAGACCGCGCCCGACGCCATCTTTGACGATCCCCAGGGGGTTCCTATCCAGCAAACCATGTTCCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGAAATTCCGGTCTCACCACCGTCAGGTGCCCTTTCTACCTTCTCTCTACCACTGCGTCTGCGTTGCTTTTCTCCTCTCTTTTATCTTTTTGAAATTCTGCGTTTATTTATTTATTTATTTTTTTTTTTTTTTGGAACTTCTATTTGATTGATCAATGGGCCTTCCCCGTTTTTCTTTCTTTCACCTAATTTTGGTGTTTAGGATTTGAATACTTGTATGCGTAAAATTGTTTTGGGTTGATCTTGCTTACAACCCAAGGCAAGTATTTTGTGGTGCTTGTCGATATGTTTTAACAAGTAATTCAAATTATTTACTTTACTATGGTTAAATAATAATGTTCACCAGATTGTGGTAGTTCCGAGCGATTGCTGTTTGTGTTTGGCTTCTTACATAAATCTAGTTGGATTATATAACAGTTCAGTCAGGACGCAGGTGCAAAGTGATATAAATTCAAGGCCTCCCAAATGCTTTACACCATACCAACAACTTTTGTTTGGTTGTAAATCCCTTTTCATTTTACAAACATTCAATTGGTTTACTTTTACCAAAGATGCTCCGAGCATTATTATTGTTAGTGAGGCAGCATTGCTTTGCCTTGCAACCGGGGCATTTGAAATTTTATCGTGCAGGACTTGTCAGTCAAATCGATTTTTTTTTTTTGTTCAACAACATCTATGACAATCACAATAATAGCATAAATCAAATAGGTTTGTTTTTAGTGATAGAAGCATAAAGGACTATAAGCCCAAATGTTGGAATTGCTTACACTCTTACAAAAAATGTTGATGCACGTAAGCTCAACACTTGTTGGTAGCAGGCCACCGATATGATTTATCATGGTTGAACAGCAAAAGTTTGTGTACATTTATTTTGACCAAGAAGATGTAGGCGGGGAGTGGGGGGAGAGAGGCGGATGTTGTCTGTTTGCGTTCAATTGAATAATTATGTTTGTTCTTCATCTGGTTATGATACTTTCGTGACCTCTACAGATCAAAGATAAGTTCAGCTGCTGTGGTTGGTTGTATGATTCCACTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCACAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTATGACTATTTCCGGTCATCTTTCATTCTCTCAGTTGCTTCTTGTAATCTACATGTTGATTATTTGACACTTTGCTCTGTTATAGACAATTGGAGTAATTAACTATTCTATCTATCTTTTGTTTAGGTTGGCGATTTTGAGAAATTGGATAAGTGTGCTGTGATGGATCCTTCAAACTGGACACAGCAAAGCCTTGCGTTGCCTGCTTGATTTTCACGAGCTGCTACTTTTCCACGCGGTTATTTTCCGTTGTGTGCAGTCAGTTTTTGCTCTACTCTTGTGCTCTTGTTGAGATATTCTTGTTACACTTAGGAGGGATAGGCAAAGATTGGAGATGTGTGCATACGTACACTCGTGATAGAACCAAGTACATATTTTTATTCATTCACCTTACAAGTCATTTCATACACCTTTTGTTCATTCACCTTACAAGTCTAGATTGCATACGTTTGTCCAATTAATTTCCCTTGGCTGCACACTATCTGCATCCCCCTATCGTCATTTGTTTTTAACTTCTCAAATTACATTTTGACCATGCATCTCCCCCTTCGGACGAATCGTTCATAGGGGCTTCTTTTCCTTCTTAATTTGGTTTTCCTGCTTGGTTTTGAGGGGACTTGAACTCTGATCCTTGATGGTACTATCTGGTATCACACAAGTAAGCCGTGAAGAAACATCTTGGAAAAGATGATATACCTGAGTTCATTGGGGTGCTGCCCAGATGCAGATGAATCTAATTGGAATGCTGCGGTTTTGAATCTGGAAGCGAAGGCCCGGCATGAGAAATAAGAGCCGGTCTCGATAGCCAAAGAGACTGCCTGCAGGGGGTATGCCACGGCAGAACGTCCGCTTAAAGACGATGGCAGCTTTTACAGATCCCTTTCATGGAGTTGCAGGCTGCAGGCTGCAGGCAAGTCATCCTTGGCTACAATACATGACTCTCCATTCCCATGTTGAACATTACTTCCTTTCTTCCCGAGTAGAAAAGGAATTAAAGCCCCCTTGTGTGCATTCCTTTTGAACCAAAAGGAGAATTTGTGTATGTGTGGATTGAAGTTTGGTTTTATATGTTAAAATTAGCGGCAGCTCCACAACAACATGCTATGCACTCTACACTCTACACTCATCGAGATTTGTGCCTCGGAATATATTCTGTAC

mRNA sequence

AGGCCAAACCTAAACCAATTTTCTTACGCCAAATTTCTCCTCTTCCCTTCCATTGTAATCCTCCCCTACCGCCGTTTTTCGTTTTTCCGATTCGCCGTCGGACCACCACAGGGAAAAACCTTTCCAAACATGTCCAAGGACGACACCCCGGTCGTCGGAACTCAGGTCGGAAAGACCGCGCCCGACGCCATCTTTGACGATCCCCAGGGGGTTCCTATCCAGCAAACCATGTTCCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGAAATTCCGGTCTCACCACCGTCAGATCAAAGATAAGTTCAGCTGCTGTGGTTGGTTGTATGATTCCACTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCACAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGCGATTTTGAGAAATTGGATAAGTGTGCTGTGATGGATCCTTCAAACTGGACACAGCAAAGCCTTGCGTTGCCTGCTTGATTTTCACGAGCTGCTACTTTTCCACGCGGTTATTTTCCGTTGTGTGCAGTCAGTTTTTGCTCTACTCTTGTGCTCTTGTTGAGATATTCTTGTTACACTTAGGAGGGATAGGCAAAGATTGGAGATGTGTGCATACGTACACTCGTGATAGAACCAAGGGACTTGAACTCTGATCCTTGATGGTACTATCTGGTATCACACAAGTAAGCCGTGAAGAAACATCTTGGAAAAGATGATATACCTGAGTTCATTGGGGTGCTGCCCAGATGCAGATGAATCTAATTGGAATGCTGCGGTTTTGAATCTGGAAGCGAAGGCCCGGCATGAGAAATAAGAGCCGGTCTCGATAGCCAAAGAGACTGCCTGCAGGGGGTATGCCACGGCAGAACGTCCGCTTAAAGACGATGGCAGCTTTTACAGATCCCTTTCATGGAGTTGCAGGCTGCAGGCTGCAGGCAAGTCATCCTTGGCTACAATACATGACTCTCCATTCCCATGTTGAACATTACTTCCTTTCTTCCCGAGTAGAAAAGGAATTAAAGCCCCCTTGTGTGCATTCCTTTTGAACCAAAAGGAGAATTTGTGTATGTGTGGATTGAAGTTTGGTTTTATATGTTAAAATTAGCGGCAGCTCCACAACAACATGCTATGCACTCTACACTCTACACTCATCGAGATTTGTGCCTCGGAATATATTCTGTAC

Coding sequence (CDS)

ATGTCCAAGGACGACACCCCGGTCGTCGGAACTCAGGTCGGAAAGACCGCGCCCGACGCCATCTTTGACGATCCCCAGGGGGTTCCTATCCAGCAAACCATGTTCCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGAAATTCCGGTCTCACCACCGTCAGATCAAAGATAAGTTCAGCTGCTGTGGTTGGTTGTATGATTCCACTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCACAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGCGATTTTGAGAAATTGGATAAGTGTGCTGTGATGGATCCTTCAAACTGGACACAGCAAAGCCTTGCGTTGCCTGCTTGA

Protein sequence

MSKDDTPVVGTQVGKTAPDAIFDDPQGVPIQQTMFRDTPAPFYCVYCGNSGLTTVRSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDPSNWTQQSLALPA

Homology

[Close]

BLAST of CmaCh08G000170 vs. TrEMBL
Match: A0A0A0KDG7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091950 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.4e-55
Identity = 103/133 (77.44%), Postives = 111/133 (83.46%), Query Frame = 1


Query: 1   MSKDDTPVVGT---------QVGKTAPDAIFDDPQGVPIQQTMFRDTPAPFYCVYCGNSG 60
           MSK+  PVVG          Q G+  P+AIF DP GVPIQQTM+RDTPAPF CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTVRSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVM 120
           LTT+RSKISSAAVVGCM+P MLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLD+CAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPSNWTQQSLALP 125
           DP +WTQ S ALP
Sbjct: 121 DPPHWTQPSYALP 133

[Close]

BLAST of CmaCh08G000170 vs. TrEMBL
Match: A9P9Z3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16430g PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-50
Identity = 96/134 (71.64%), Postives = 105/134 (78.36%), Query Frame = 1


Query: 1   MSKDDTPVVGT---------QVGKTAPDAIFDDPQGVPIQQTMFRDTPAPFYCVYCGNSG 60
           M + D PVVG          Q G   P+AI  DP+G+PIQQTM+RDTPAPF CVYCGNSG
Sbjct: 1   MGQQDQPVVGVPYYAGQNPYQAGAIPPNAIVGDPKGIPIQQTMYRDTPAPFSCVYCGNSG 60

Query: 61  LTTVRSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVM 120
           +T VRSK S AAVVGCM+PLMLG CFLCPSMDCLWHKYHYCPSCKEKV DFEK D CAVM
Sbjct: 61  VTFVRSKPSLAAVVGCMMPLMLGFCFLCPSMDCLWHKYHYCPSCKEKVADFEKSDPCAVM 120

Query: 121 DPSNWTQQSLALPA 126
           DP +WTQ+S ALPA
Sbjct: 121 DPPHWTQESFALPA 134

[Close]

BLAST of CmaCh08G000170 vs. TrEMBL
Match: W9RBP2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013174 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-50
Identity = 94/134 (70.15%), Postives = 107/134 (79.85%), Query Frame = 1


Query: 1   MSKDDTPVVGT---------QVGKTAPDAIFDDPQGVPIQQTMFRDTPAPFYCVYCGNSG 60
           MSK + PVVG          Q G   P+A   DP+G+PIQQT++RDTPAPF CVYCGNSG
Sbjct: 1   MSKQEEPVVGVPYYVAQNPYQAGAIPPNAFVGDPKGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 61  LTTVRSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVM 120
           LT+VRSK S AAVVGCM+P+MLG+CFLCPSMDCLWHKYHYCP+CKEKV DFEK D CAVM
Sbjct: 61  LTSVRSKPSLAAVVGCMMPMMLGICFLCPSMDCLWHKYHYCPNCKEKVADFEKSDVCAVM 120

Query: 121 DPSNWTQQSLALPA 126
           DP +WTQ+S ALPA
Sbjct: 121 DPPHWTQESFALPA 134

[Close]

BLAST of CmaCh08G000170 vs. TrEMBL
Match: B9GMQ9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13300g PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-49
Identity = 93/134 (69.40%), Postives = 105/134 (78.36%), Query Frame = 1


Query: 1   MSKDDTPVVGT---------QVGKTAPDAIFDDPQGVPIQQTMFRDTPAPFYCVYCGNSG 60
           M + D PV+G          Q G   P+AI  DP+G+PIQQTM+RDTPAPF CVYCGNSG
Sbjct: 1   MGQKDEPVIGVPYYAGQNPYQAGAIPPNAIVGDPRGIPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTVRSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVM 120
           +T VRSK S AAVVGCM+PLM+G CFLCPSMDCLWHK+HYCPSCKEKV DFEK D CAVM
Sbjct: 61  VTVVRSKPSLAAVVGCMMPLMVGFCFLCPSMDCLWHKHHYCPSCKEKVADFEKSDPCAVM 120

Query: 121 DPSNWTQQSLALPA 126
           DP +WTQ+S ALPA
Sbjct: 121 DPPHWTQESFALPA 134

[Close]

BLAST of CmaCh08G000170 vs. TrEMBL
Match: B9RFX0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437770 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.8e-49
Identity = 92/134 (68.66%), Postives = 102/134 (76.12%), Query Frame = 1


Query: 1   MSKDDTPVVGT---------QVGKTAPDAIFDDPQGVPIQQTMFRDTPAPFYCVYCGNSG 60
           M + D P +G          Q G   P+A+F DP+G+PIQQTM+RDTPAPF CV+CGNSG
Sbjct: 1   MGQKDEPAIGVPYYVGQNPYQAGAIPPNAVFGDPKGIPIQQTMYRDTPAPFNCVFCGNSG 60

Query: 61  LTTVRSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVM 120
           LT VRSK S AAVVGCM+P MLG CFLCPSMDCLWHKYHYCP+CKEKV DFEK D C VM
Sbjct: 61  LTLVRSKPSLAAVVGCMMPFMLGFCFLCPSMDCLWHKYHYCPNCKEKVADFEKSDPCLVM 120

Query: 121 DPSNWTQQSLALPA 126
           DP  WTQQS ALPA
Sbjct: 121 DPPQWTQQSFALPA 134

[Close]

BLAST of CmaCh08G000170 vs. TAIR10
Match: AT5G13190.1 (AT5G13190.1 LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629))

HSP 1 Score: 176.0 bits (445), Expect = 1.4e-44
Identity = 81/134 (60.45%), Postives = 94/134 (70.15%), Query Frame = 1


Query: 1   MSKDDTPVVGT---------QVGKTAPDAIFDDPQGVPIQQTMFRDTPAPFYCVYCGNSG 60
           M+K+ T V+G          Q G   P+AI+ DP G PIQQT++RDTPAPF C+YCGN+G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query: 61  LTTVRSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVM 120
           LT +RSK   AAVV CM+P MLG CFLCPSMDCLW+K H+CP C  KV DFEK D C VM
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query: 121 DPSNWTQQSLALPA 126
           DP  W Q S ALPA
Sbjct: 121 DPPQWKQPSFALPA 134

[Close]

BLAST of CmaCh08G000170 vs. NCBI nr
Match: gi|449445586|ref|XP_004140553.1| (PREDICTED: uncharacterized protein LOC101221688 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 4.9e-55
Identity = 103/133 (77.44%), Postives = 111/133 (83.46%), Query Frame = 1


Query: 1   MSKDDTPVVGT---------QVGKTAPDAIFDDPQGVPIQQTMFRDTPAPFYCVYCGNSG 60
           MSK+  PVVG          Q G+  P+AIF DP GVPIQQTM+RDTPAPF CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTVRSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVM 120
           LTT+RSKISSAAVVGCM+P MLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLD+CAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPSNWTQQSLALP 125
           DP +WTQ S ALP
Sbjct: 121 DPPHWTQPSYALP 133

[Close]

BLAST of CmaCh08G000170 vs. NCBI nr
Match: gi|659119896|ref|XP_008459901.1| (PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo])

HSP 1 Score: 219.9 bits (559), Expect = 2.4e-54
Identity = 102/133 (76.69%), Postives = 110/133 (82.71%), Query Frame = 1


Query: 1   MSKDDTPVVGT---------QVGKTAPDAIFDDPQGVPIQQTMFRDTPAPFYCVYCGNSG 60
           MSK+  PVVG          Q G+  P+ IF DPQGVPIQQTM+RDTPAPF CVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNPIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTVRSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVM 120
           LTT+RSKIS AAVVGCM+P MLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLD+CAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 121 DPSNWTQQSLALP 125
           DP +WTQ S ALP
Sbjct: 121 DPPHWTQPSYALP 133

[Close]

BLAST of CmaCh08G000170 vs. NCBI nr
Match: gi|224072502|ref|XP_002303762.1| (hypothetical protein POPTR_0003s16430g [Populus trichocarpa])

HSP 1 Score: 206.5 bits (524), Expect = 2.8e-50
Identity = 96/134 (71.64%), Postives = 105/134 (78.36%), Query Frame = 1


Query: 1   MSKDDTPVVGT---------QVGKTAPDAIFDDPQGVPIQQTMFRDTPAPFYCVYCGNSG 60
           M + D PVVG          Q G   P+AI  DP+G+PIQQTM+RDTPAPF CVYCGNSG
Sbjct: 1   MGQQDQPVVGVPYYAGQNPYQAGAIPPNAIVGDPKGIPIQQTMYRDTPAPFSCVYCGNSG 60

Query: 61  LTTVRSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVM 120
           +T VRSK S AAVVGCM+PLMLG CFLCPSMDCLWHKYHYCPSCKEKV DFEK D CAVM
Sbjct: 61  VTFVRSKPSLAAVVGCMMPLMLGFCFLCPSMDCLWHKYHYCPSCKEKVADFEKSDPCAVM 120

Query: 121 DPSNWTQQSLALPA 126
           DP +WTQ+S ALPA
Sbjct: 121 DPPHWTQESFALPA 134

[Close]

BLAST of CmaCh08G000170 vs. NCBI nr
Match: gi|703112225|ref|XP_010100062.1| (hypothetical protein L484_013174 [Morus notabilis])

HSP 1 Score: 206.5 bits (524), Expect = 2.8e-50
Identity = 94/134 (70.15%), Postives = 107/134 (79.85%), Query Frame = 1


Query: 1   MSKDDTPVVGT---------QVGKTAPDAIFDDPQGVPIQQTMFRDTPAPFYCVYCGNSG 60
           MSK + PVVG          Q G   P+A   DP+G+PIQQT++RDTPAPF CVYCGNSG
Sbjct: 1   MSKQEEPVVGVPYYVAQNPYQAGAIPPNAFVGDPKGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 61  LTTVRSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVM 120
           LT+VRSK S AAVVGCM+P+MLG+CFLCPSMDCLWHKYHYCP+CKEKV DFEK D CAVM
Sbjct: 61  LTSVRSKPSLAAVVGCMMPMMLGICFLCPSMDCLWHKYHYCPNCKEKVADFEKSDVCAVM 120

Query: 121 DPSNWTQQSLALPA 126
           DP +WTQ+S ALPA
Sbjct: 121 DPPHWTQESFALPA 134

[Close]

BLAST of CmaCh08G000170 vs. NCBI nr
Match: gi|743819248|ref|XP_011020836.1| (PREDICTED: uncharacterized protein LOC105123069 [Populus euphratica])

HSP 1 Score: 206.5 bits (524), Expect = 2.8e-50
Identity = 96/134 (71.64%), Postives = 105/134 (78.36%), Query Frame = 1


Query: 1   MSKDDTPVVGT---------QVGKTAPDAIFDDPQGVPIQQTMFRDTPAPFYCVYCGNSG 60
           M + D PVVG          Q G   P+AI  DP+G+PIQQTM+RDTPAPF CVYCGNSG
Sbjct: 1   MGQQDQPVVGVPYYAGQNPYQAGAIPPNAIVGDPKGIPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 61  LTTVRSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVM 120
           +T VRSK S AAVVGCM+PLMLG CFLCPSMDCLWHKYHYCPSCKEKV DFEK D CAVM
Sbjct: 61  VTFVRSKPSLAAVVGCMMPLMLGFCFLCPSMDCLWHKYHYCPSCKEKVADFEKSDPCAVM 120

Query: 121 DPSNWTQQSLALPA 126
           DP +WTQ+S ALPA
Sbjct: 121 DPPHWTQESFALPA 134

The following BLAST results are available for this feature:

BLAST of CmaCh08G000170 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh08G000170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDG7_CUCSA	3.4e-55	77.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091950 PE=4 SV=1	[more]
A9P9Z3_POPTR	1.9e-50	71.64	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16430g PE=2 SV=1	[more]
W9RBP2_9ROSA	1.9e-50	70.15	Uncharacterized protein OS=Morus notabilis GN=L484_013174 PE=4 SV=1	[more]
B9GMQ9_POPTR	1.6e-49	69.40	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13300g PE=4 SV=1	[more]
B9RFX0_RICCO	2.8e-49	68.66	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437770 PE=4 SV=1	[more]

BLAST of CmaCh08G000170 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13190.1	1.4e-44	60.45	LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629)	[more]

BLAST of CmaCh08G000170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445586\|ref\|XP_004140553.1\|	4.9e-55	77.44	PREDICTED: uncharacterized protein LOC101221688 [Cucumis sativus]	[more]
gi\|659119896\|ref\|XP_008459901.1\|	2.4e-54	76.69	PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo]	[more]
gi\|224072502\|ref\|XP_002303762.1\|	2.8e-50	71.64	hypothetical protein POPTR_0003s16430g [Populus trichocarpa]	[more]
gi\|703112225\|ref\|XP_010100062.1\|	2.8e-50	70.15	hypothetical protein L484_013174 [Morus notabilis]	[more]
gi\|743819248\|ref\|XP_011020836.1\|	2.8e-50	71.64	PREDICTED: uncharacterized protein LOC105123069 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006629	LITAF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0034051	negative regulation of plant-type hypersensitive response
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0009646	response to absence of light
biological_process	GO:0009863	salicylic acid mediated signaling pathway
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G000170.1	CmaCh08G000170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006629	LPS-induced tumour necrosis factor alpha factor	PFAM	PF10601	zf-LITAF-like	coord: 37..101 score: 9.7
IPR006629	LPS-induced tumour necrosis factor alpha factor	SMART	SM00714	litaf	coord: 39..104 score: 9.0
None	No IPR available	PANTHER	PTHR23292	LIPOPOLYSACCHARIDE-INDUCED TRANSCRIPTION FACTOR REGULATING TUMOR NECROSIS FACTOR ALPHA	coord: 18..125 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G000170	Cucsa.349300	Cucumber (Gy14) v1	cgycmaB0955
CmaCh08G000170	Cla001489	Watermelon (97103) v1	cmawmB879
CmaCh08G000170	Csa6G091950	Cucumber (Chinese Long) v2	cmacuB903
CmaCh08G000170	MELO3C022346	Melon (DHL92) v3.5.1	cmameB817
CmaCh08G000170	ClCG06G001820	Watermelon (Charleston Gray)	cmawcgB805
CmaCh08G000170	CSPI06G07460	Wild cucumber (PI 183967)	cmacpiB923
CmaCh08G000170	CmoCh08G000180	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G000170	CmoCh17G013590	Cucurbita moschata (Rifu)	cmacmoB899
CmaCh08G000170	Lsi09G017600	Bottle gourd (USVL1VR-Ls)	cmalsiB812
CmaCh08G000170	Cp4.1LG12g10000	Cucurbita pepo (Zucchini)	cmacpeB905
CmaCh08G000170	Cp4.1LG17g09340	Cucurbita pepo (Zucchini)	cmacpeB914
CmaCh08G000170	MELO3C022346.2	Melon (DHL92) v3.6.1	cmamedB915
CmaCh08G000170	CsaV3_6G007860	Cucumber (Chinese Long) v3	cmacucB1072
CmaCh08G000170	Cla97C06G111120	Watermelon (97103) v2	cmawmbB922
CmaCh08G000170	Bhi12G002137	Wax gourd	cmawgoB1096
CmaCh08G000170	CsGy6G007480	Cucumber (Gy14) v2	cgybcmaB871
CmaCh08G000170	Carg03814	Silver-seed gourd	carcmaB1361
CmaCh08G000170	Carg11571	Silver-seed gourd	carcmaB0023

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh08G000170	CmaCh17G014120	Cucurbita maxima (Rimu)	cmacmaB384

The following block(s) are covering this gene:

None