Cp4.1LG12g10000.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTTATTATTTTTTTATTTTTTATTTTTAAGAATATTTTTACGAGAAATTTCGACCCTTTTGCTTCCATCCTAATTCTGCCGTTTCTCGTTTGTTCTCCTTCAACAATTTCATTGACTTCCATTCCAACAACTTTCAGAATCGCCGGCCGAGCAGCACAGAGAAAAAGCTTAGGGAAAATGTCGAAGAACGATGAGCCGGTCGTCGGAATTCCATTCTATGTTGGTAATAACGCTTATCAGGCTGGACAGATCCCTCCGAACGCCATTTTTGGCCATCCCCAGGGAGTTCCTATCCACCAAACCATGTACCGCGACACTCCTGCTCCTTACTGCTGTGTTTATTGTGGAAATTCCGGTCTCACCTCCATCAGGTTCCTTTTCTACCTTCTCTCTGTCTCTGCGTCTAGGTTTTTTTTAAAAAATTTTTAATTTTTTTTTTAAATTTTTGTCTCCTTTCTTTGATCTATTTGAAATTCTGTGTCTAATTAGTCCGGTAGTTGTCTTTTTCTGTTTTAACCGATGATTATCCCATTGTTTGTTTTACTTGAACCGTGAATTCAGGAACGGTTTTGGGCATTGAAATTTTTTACTTCGTTTATTGGAACTTGTATTTGATTGATCAACGGGCCTTCCCCATTTTTGTCTTTCACCTAATTTTCTTCTTTAGGATTAGAATCACTTGTCGCTATTGAATTTTGTGGGTCGTGAAACTTTGCTTACATCATAAGGCAGGAACTGTCTGGTTGTTCCTGCTATGCTCTAACAATTAACTGAAATGATTTGAGTGACTTTTACCCTATATACTCAAAATGTCTTTGAAATAGTTGTTGCTTGGGTGTTTAAGTACACTTCTTCGTTTACATTGGTTTCAAAATCGTCTGACGCCCAACTTTACTGTTGTCCAATAATGTTTTACCAGGTTGTGGTCGTTTTGAGGGATTGCTGTTTGTGTTTGATTTCTTACATAAAACTAATTGGATCAAGGGCAGTTACTTTGTTTTCAAATTTGTATAAACACTCAGTCAGGGCGCAGGTGCAAGGTGGTACAAACTCAGGGGCTCGCAAATGGTTTACACCATACAAAGTTTTGTTTGGCTTTAAATCATTTTCATTTTTAGAAACATTCAAATTGCATACTTTTACATAAGATGCTCCCTTCTTTAAAATAGCATTATTGTTAGTGGGGACACTTGAAATTTTACCATTCAGAACTTATCAATCAATCTAATTTCTTGGTGTGCGTTAAAAATTAATGCTCTGTTCATTCTTTCTTCAACGGCAACAATGAAAATTACAATAATAGCATAAATCAAATAGGTTATCATGTTACAATTTCAGTTTTTAATGAGATTAGCCTAAACAAATATAAGACCAAATGTTGGGATTGTATATACACTGACAAAAATGTTGGTACTCGTATGTTCAAGACTTGCTGTAGCAGAGAACCAATATGATTTATCATGGTTAGGCAGCAAAATTTTGTGTATAATTATCTGGACATAGTAGATATAGGAGGGGAGAGAGGTGGATGTCGTATATTTATGTTAACAGTCAAATAATTATGCCTCTTCATATGGTTGTGATGCTTTCATGATCTCTGCAGATCGAAGATAAGTTTAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGATTGCCTTTGGCATAAGTATCACTATTGTCCCAGCTGCAAGGAAAAGGTATGACTATTTCCTGTCATTTTTAATTCTTTCAGTTGCTTCTTCTCATCTGCATATTGGTTATTTGAGACTTTGCTCTATTATGGATAATTGGAGTAATTAATGATACTATCATATTTCCTTAGGTTGGTGATTTTGAGAAATCGGATGTGTGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTTTGCATTGCCTGCCTGATTTTTACGAGCTGCTAGTTTATCGTGTGGCTATTTTGCATTGTCTGCAGTCAGTATTTGCTATACTCTTGTGCTATTTGATAGAACCAAGTACATGTTTTTTATTTGCTATACTCTTGTGCTGTTTTTGAGATGTTCTTGTTACAATTAGGGATAGGCAAGGTTTGGATACAATTGTGATAGAATCAAGTACATGTTTTTCTATAACTTACCGCTTGTAAATACCTTGTTCTTACATTGGCATTGTTGTTTATATATAATACCGCTAGCTTAGTCTAGAGGAATCATTTCATAGACCTCTTGATCATTCACCTCATAAGTTGAAATGGTATGCGTTTGTTCAATTAATTTCCCGTTGCCATTCACTATCTGCATCTCCTGACACCATTTGTTCTAACCTCCCTCAAATTACATTTTGAGCATGCACCTCATCATCTGGATGAATCAACGATGGGATTTTCTTTTTCTTCTTTATTTGGCTATCGATATCGAAATGAAGTCGAGCATAATAGATGGTTTGCTATTGCCTGCTTGGTTTTGAGGGGACTTGGATTCTGATGAGGGATGATGATCTGGGATCACGCAAGTAAACAATGAGAAACATCTCGGAAAAGATGGTATACCTGAGTTCAAGGGGGTCTTGCCCAGATGCAGATGTAGAGAAAGACAATCGAAGTCGATTGCAGAGGTTTTCAATCTGGAAGCGAAAGTTCGGCATGGGAAATAAGAGCCGGTCTCGATAGCCAAAGAGACTGCCTGCATGAGTATGCCATTGCAGGGGGCAGCTTTTTACAGATCCCTTCATGAAGTTGCAGGCTGCAGGCAAGTCATCCTTGGCTACAGTACATGACTCTCCATTCCCATGTTGAACCTTTCCTTCCTTCCTCATAAATCAGGTAGAATTAAAGCCTCTCCTCGTATGTTGAAGGCGAGAGTGCAGTCCATTCCTTTTGAAGCAAAAGGAGACATTAGGTATGTATGTATGTATGTATGTTTTCATTGGAGTTTGGGTTATAAGTTAAAATTAGGAGCAGCCCCACCCACAACAATATACTGCACTCTACACTCACCGAGGTTTCTGTCTCGGAATATATTCTGTATAATTCGACTTACAAAATTTGTGTTGGCT CTTTATTATTTTTTTATTTTTTATTTTTAAGAATATTTTTACGAGAAATTTCGACCCTTTTGCTTCCATCCTAATTCTGCCGTTTCTCGTTTGTTCTCCTTCAACAATTTCATTGACTTCCATTCCAACAACTTTCAGAATCGCCGGCCGAGCAGCACAGAGAAAAAGCTTAGGGAAAATGTCGAAGAACGATGAGCCGGTCGTCGGAATTCCATTCTATGTTGGTAATAACGCTTATCAGGCTGGACAGATCCCTCCGAACGCCATTTTTGGCCATCCCCAGGGAGTTCCTATCCACCAAACCATGTACCGCGACACTCCTGCTCCTTACTGCTGTGTTTATTGTGGAAATTCCGGTCTCACCTCCATCAGATCGAAGATAAGTTTAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGATTGCCTTTGGCATAAGTATCACTATTGTCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATCGGATGTGTGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTTTGCATTGCCTGCCTGATTTTTACGAGCTGCTAGTTTATCGTGTGGCTATTTTGCATTGTCTGCAGGATAGGCAAGGTTTGGATACAATTGTGATAGAATCAAGCACCTCATCATCTGGATGAATCAACGATGGGATTTTCTTTTTCTTCTTTATTTGGCTATCGATATCGAAATGAAGTCGAGCATAATAGATGGTTTGCTATTGCCTGCTTGGTTTTGAGGGGACTTGGATTCTGATGAGGGATGATGATCTGGGATCACGCAAGTAAACAATGAGAAACATCTCGGAAAAGATGGTATACCTGAGTTCAAGGGGGTCTTGCCCAGATGCAGATGTAGAGAAAGACAATCGAAGTCGATTGCAGAGGTTTTCAATCTGGAAGCGAAAGTTCGGCATGGGAAATAAGAGCCGGTCTCGATAGCCAAAGAGACTGCCTGCATGAGTATGCCATTGCAGGGGGCAGCTTTTTACAGATCCCTTCATGAAGTTGCAGGCTGCAGGCAAGTCATCCTTGGCTACAGTACATGACTCTCCATTCCCATGTTGAACCTTTCCTTCCTTCCTCATAAATCAGGTAGAATTAAAGCCTCTCCTCGTATGTTGAAGGCGAGAGTGCAGTCCATTCCTTTTGAAGCAAAAGGAGACATTAGGTATGTATGTATGTATGTATGTTTTCATTGGAGTTTGGGTTATAAGTTAAAATTAGGAGCAGCCCCACCCACAACAATATACTGCACTCTACACTCACCGAGGTTTCTGTCTCGGAATATATTCTGTATAATTCGACTTACAAAATTTGTGTTGGCT ATGTCGAAGAACGATGAGCCGGTCGTCGGAATTCCATTCTATGTTGGTAATAACGCTTATCAGGCTGGACAGATCCCTCCGAACGCCATTTTTGGCCATCCCCAGGGAGTTCCTATCCACCAAACCATGTACCGCGACACTCCTGCTCCTTACTGCTGTGTTTATTGTGGAAATTCCGGTCTCACCTCCATCAGATCGAAGATAAGTTTAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGATTGCCTTTGGCATAAGTATCACTATTGTCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATCGGATGTGTGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTTTGCATTGCCTGCCTGA MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA
BLAST of Cp4.1LG12g10000.1 vs. TrEMBL
Match: A0A0A0KDG7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091950 PE=4 SV=1) HSP 1 Score: 266.9 bits (681), Expect = 1.3e-68 Identity = 119/133 (89.47%), Postives = 123/133 (92.48%), Query Frame = 1
BLAST of Cp4.1LG12g10000.1 vs. TrEMBL
Match: W9RBP2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013174 PE=4 SV=1) HSP 1 Score: 253.8 bits (647), Expect = 1.1e-64 Identity = 110/134 (82.09%), Postives = 120/134 (89.55%), Query Frame = 1
BLAST of Cp4.1LG12g10000.1 vs. TrEMBL
Match: A0A067GTW3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032751mg PE=4 SV=1) HSP 1 Score: 250.4 bits (638), Expect = 1.3e-63 Identity = 107/134 (79.85%), Postives = 118/134 (88.06%), Query Frame = 1
BLAST of Cp4.1LG12g10000.1 vs. TrEMBL
Match: V4VHJ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033047mg PE=4 SV=1) HSP 1 Score: 250.4 bits (638), Expect = 1.3e-63 Identity = 107/134 (79.85%), Postives = 118/134 (88.06%), Query Frame = 1
BLAST of Cp4.1LG12g10000.1 vs. TrEMBL
Match: A9P9Z3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16430g PE=2 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 3.7e-63 Identity = 108/134 (80.60%), Postives = 117/134 (87.31%), Query Frame = 1
BLAST of Cp4.1LG12g10000.1 vs. TAIR10
Match: AT5G13190.1 (AT5G13190.1 LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629)) HSP 1 Score: 218.0 bits (554), Expect = 3.5e-57 Identity = 93/134 (69.40%), Postives = 108/134 (80.60%), Query Frame = 1
BLAST of Cp4.1LG12g10000.1 vs. NCBI nr
Match: gi|659119896|ref|XP_008459901.1| (PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo]) HSP 1 Score: 269.2 bits (687), Expect = 3.8e-69 Identity = 120/133 (90.23%), Postives = 124/133 (93.23%), Query Frame = 1
BLAST of Cp4.1LG12g10000.1 vs. NCBI nr
Match: gi|449445586|ref|XP_004140553.1| (PREDICTED: uncharacterized protein LOC101221688 [Cucumis sativus]) HSP 1 Score: 266.9 bits (681), Expect = 1.9e-68 Identity = 119/133 (89.47%), Postives = 123/133 (92.48%), Query Frame = 1
BLAST of Cp4.1LG12g10000.1 vs. NCBI nr
Match: gi|703112225|ref|XP_010100062.1| (hypothetical protein L484_013174 [Morus notabilis]) HSP 1 Score: 253.8 bits (647), Expect = 1.6e-64 Identity = 110/134 (82.09%), Postives = 120/134 (89.55%), Query Frame = 1
BLAST of Cp4.1LG12g10000.1 vs. NCBI nr
Match: gi|567892627|ref|XP_006438834.1| (hypothetical protein CICLE_v10033047mg [Citrus clementina]) HSP 1 Score: 250.4 bits (638), Expect = 1.8e-63 Identity = 107/134 (79.85%), Postives = 118/134 (88.06%), Query Frame = 1
BLAST of Cp4.1LG12g10000.1 vs. NCBI nr
Match: gi|224072502|ref|XP_002303762.1| (hypothetical protein POPTR_0003s16430g [Populus trichocarpa]) HSP 1 Score: 248.8 bits (634), Expect = 5.3e-63 Identity = 108/134 (80.60%), Postives = 117/134 (87.31%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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