CU095986 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU095986
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	LPS-induced tumor necrosis factor alpha factor
Location	Chr6 : 6263202 .. 6264972 (+)
Sequence length	834

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGGAATTCCGTTTTCTATCAATTGCTTCAAACAGAGAGAGAGAGACGAAGCTTACCGAGCGAAAATGTCCAAGAACCACGAGCCGGTCGTCGGAGTTCCACTCTATGTCGGCAACAATCCTTATCAGGCCGGCCAGATCCCTCCCAACGCTATTTTTGGCGATCCCCACGGGGTTCCTATTCAACAAACCATGTACCGCGACACTCCTGCTCCTTTCAACTGTGTCTATTGTGGAAATTCCGGCCTCACTACCATCAGATCAAAGATAAGTTCAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAATTGGATAGATGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTACGCATTGCCTGGTTGATTTTGAGGAGCTACTATTTTCCCGTGTGGTTATTTAGCATCATTTGCATTCAGTACTTGCGATACCCTTGTGCTATTTTTGTGATGTTTTTGTGATGTTTTTGTGATGTTTTTGTTACACTTAGGGATAGACACAGTTTGGATATCTTTCCATATATACAATTGTGATAGAGCCAAGTACATTGTTTTGTTTTTGGTATCTTACCGCTTGTAAATACCTTGTTCTTACACTGGCATTGCTGTTTATATACATTACTGCTGCTAGCTTTAATTTTGGTACCTAAAATTCTTTCCATAGACCTCTTGATCTTGATCATTCATCTCACAACTGGAAATGGTATGCATTTGTTACAATTACG

Library


Library category	ESTs
fruit (8DPP) library	11
gynoecious flower library	9
hermaphrodite flower library	5

Homology

[Close]

BLAST of CU095986 vs. TrEMBL
Match: A0A0A0KDG7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091950 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.7e-78
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 3


Query: 72  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 131
           MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 132 LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 191
           LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 192 DPPHWTQPSYALPG 251
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

Query: 252  311
           
Sbjct: 181  134

Query: 312  371
           
Sbjct: 241  134

Query: 372  431
           
Sbjct: 301  134

Query: 432  474
           
Sbjct: 361  134

[Close]

BLAST of CU095986 vs. TrEMBL
Match: A0A067GTW3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032751mg PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.5e-63
Identity = 109/133 (81.95%), Postives = 119/133 (89.47%), Query Frame = 3


Query: 72  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 131
           M+KN EPVVGVP YVG NPYQ G+IPPNAI GDP G+PIQQT+YRDTPAPF+CVYCGNSG
Sbjct: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 132 LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 191
           +T +RSK SSAAVVGCMMPF LG+CFLCPSMDCLWHKYHYCPSC EKV +FEK D CAVM
Sbjct: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120

Query: 192 DPPHWTQPSYALP 251
           DPPHWTQ S+ALP
Sbjct: 121 DPPHWTQLSFALP 133

Query: 252  311
           
Sbjct: 181  133

Query: 312  371
           
Sbjct: 241  133

Query: 372  431
           
Sbjct: 301  133

Query: 432  471
           
Sbjct: 361  133

[Close]

BLAST of CU095986 vs. TrEMBL
Match: V4VHJ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033047mg PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.5e-63
Identity = 109/133 (81.95%), Postives = 119/133 (89.47%), Query Frame = 3


Query: 72  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 131
           M+KN EPVVGVP YVG NPYQ G+IPPNAI GDP G+PIQQT+YRDTPAPF+CVYCGNSG
Sbjct: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 132 LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 191
           +T +RSK SSAAVVGCMMPF LG+CFLCPSMDCLWHKYHYCPSC EKV +FEK D CAVM
Sbjct: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120

Query: 192 DPPHWTQPSYALP 251
           DPPHWTQ S+ALP
Sbjct: 121 DPPHWTQLSFALP 133

Query: 252  311
           
Sbjct: 181  133

Query: 312  371
           
Sbjct: 241  133

Query: 372  431
           
Sbjct: 301  133

Query: 432  471
           
Sbjct: 361  133

[Close]

BLAST of CU095986 vs. TrEMBL
Match: W9RBP2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013174 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 4.4e-63
Identity = 109/133 (81.95%), Postives = 117/133 (87.97%), Query Frame = 3


Query: 72  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 131
           MSK  EPVVGVP YV  NPYQAG IPPNA  GDP G+PIQQT+YRDTPAPF+CVYCGNSG
Sbjct: 1   MSKQEEPVVGVPYYVAQNPYQAGAIPPNAFVGDPKGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 132 LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 191
           LT++RSK S AAVVGCMMP MLG+CFLCPSMDCLWHKYHYCP+CKEKV DFEK D CAVM
Sbjct: 61  LTSVRSKPSLAAVVGCMMPMMLGICFLCPSMDCLWHKYHYCPNCKEKVADFEKSDVCAVM 120

Query: 192 DPPHWTQPSYALP 251
           DPPHWTQ S+ALP
Sbjct: 121 DPPHWTQESFALP 133

Query: 252  311
           
Sbjct: 181  133

Query: 312  371
           
Sbjct: 241  133

Query: 372  431
           
Sbjct: 301  133

Query: 432  471
           
Sbjct: 361  133

[Close]

BLAST of CU095986 vs. TrEMBL
Match: B9RFX0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437770 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.7e-62
Identity = 107/133 (80.45%), Postives = 115/133 (86.47%), Query Frame = 3


Query: 72  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 131
           M +  EP +GVP YVG NPYQAG IPPNA+FGDP G+PIQQTMYRDTPAPFNCV+CGNSG
Sbjct: 1   MGQKDEPAIGVPYYVGQNPYQAGAIPPNAVFGDPKGIPIQQTMYRDTPAPFNCVFCGNSG 60

Query: 132 LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 191
           LT +RSK S AAVVGCMMPFMLG CFLCPSMDCLWHKYHYCP+CKEKV DFEK D C VM
Sbjct: 61  LTLVRSKPSLAAVVGCMMPFMLGFCFLCPSMDCLWHKYHYCPNCKEKVADFEKSDPCLVM 120

Query: 192 DPPHWTQPSYALP 251
           DPP WTQ S+ALP
Sbjct: 121 DPPQWTQQSFALP 133

Query: 252  311
           
Sbjct: 181  133

Query: 312  371
           
Sbjct: 241  133

Query: 372  431
           
Sbjct: 301  133

Query: 432  471
           
Sbjct: 361  133

[Close]

BLAST of CU095986 vs. NCBI nr
Match: gi|449445586|ref|XP_004140553.1| (PREDICTED: uncharacterized protein LOC101221688 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 8.3e-79
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 3


Query: 72  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 131
           MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 132 LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 191
           LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 192 DPPHWTQPSYALPG 251
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

Query: 252  311
           
Sbjct: 181  134

Query: 312  371
           
Sbjct: 241  134

Query: 372  431
           
Sbjct: 301  134

Query: 432  474
           
Sbjct: 361  134

[Close]

BLAST of CU095986 vs. NCBI nr
Match: gi|659119896|ref|XP_008459901.1| (PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo])

HSP 1 Score: 295.0 bits (754), Expect = 1.3e-76
Identity = 131/134 (97.76%), Postives = 131/134 (97.76%), Query Frame = 3


Query: 72  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 131
           MSKNHEPVVGVPLYVGNNPYQAGQIPPN IFGDP GVPIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MSKNHEPVVGVPLYVGNNPYQAGQIPPNPIFGDPQGVPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 132 LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 191
           LTTIRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM
Sbjct: 61  LTTIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 120

Query: 192 DPPHWTQPSYALPG 251
           DPPHWTQPSYALPG
Sbjct: 121 DPPHWTQPSYALPG 134

Query: 252  311
           
Sbjct: 181  134

Query: 312  371
           
Sbjct: 241  134

Query: 372  431
           
Sbjct: 301  134

Query: 432  474
           
Sbjct: 361  134

[Close]

BLAST of CU095986 vs. NCBI nr
Match: gi|567892627|ref|XP_006438834.1| (hypothetical protein CICLE_v10033047mg [Citrus clementina])

HSP 1 Score: 252.7 bits (644), Expect = 7.5e-64
Identity = 109/133 (81.95%), Postives = 119/133 (89.47%), Query Frame = 3


Query: 72  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 131
           M+KN EPVVGVP YVG NPYQ G+IPPNAI GDP G+PIQQT+YRDTPAPF+CVYCGNSG
Sbjct: 1   MAKNDEPVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 132 LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 191
           +T +RSK SSAAVVGCMMPF LG+CFLCPSMDCLWHKYHYCPSC EKV +FEK D CAVM
Sbjct: 61  VTQVRSKPSSAAVVGCMMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEKRDICAVM 120

Query: 192 DPPHWTQPSYALP 251
           DPPHWTQ S+ALP
Sbjct: 121 DPPHWTQLSFALP 133

Query: 252  311
           
Sbjct: 181  133

Query: 312  371
           
Sbjct: 241  133

Query: 372  431
           
Sbjct: 301  133

Query: 432  471
           
Sbjct: 361  133

[Close]

BLAST of CU095986 vs. NCBI nr
Match: gi|703112225|ref|XP_010100062.1| (hypothetical protein L484_013174 [Morus notabilis])

HSP 1 Score: 251.1 bits (640), Expect = 2.2e-63
Identity = 109/133 (81.95%), Postives = 117/133 (87.97%), Query Frame = 3


Query: 72  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 131
           MSK  EPVVGVP YV  NPYQAG IPPNA  GDP G+PIQQT+YRDTPAPF+CVYCGNSG
Sbjct: 1   MSKQEEPVVGVPYYVAQNPYQAGAIPPNAFVGDPKGIPIQQTIYRDTPAPFSCVYCGNSG 60

Query: 132 LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 191
           LT++RSK S AAVVGCMMP MLG+CFLCPSMDCLWHKYHYCP+CKEKV DFEK D CAVM
Sbjct: 61  LTSVRSKPSLAAVVGCMMPMMLGICFLCPSMDCLWHKYHYCPNCKEKVADFEKSDVCAVM 120

Query: 192 DPPHWTQPSYALP 251
           DPPHWTQ S+ALP
Sbjct: 121 DPPHWTQESFALP 133

Query: 252  311
           
Sbjct: 181  133

Query: 312  371
           
Sbjct: 241  133

Query: 372  431
           
Sbjct: 301  133

Query: 432  471
           
Sbjct: 361  133

[Close]

BLAST of CU095986 vs. NCBI nr
Match: gi|743819248|ref|XP_011020836.1| (PREDICTED: uncharacterized protein LOC105123069 [Populus euphratica])

HSP 1 Score: 250.0 bits (637), Expect = 4.9e-63
Identity = 109/133 (81.95%), Postives = 115/133 (86.47%), Query Frame = 3


Query: 72  MSKNHEPVVGVPLYVGNNPYQAGQIPPNAIFGDPHGVPIQQTMYRDTPAPFNCVYCGNSG 131
           M +  +PVVGVP Y G NPYQAG IPPNAI GDP G+PIQQTMYRDTPAPFNCVYCGNSG
Sbjct: 1   MGQQDQPVVGVPYYAGQNPYQAGAIPPNAIVGDPKGIPIQQTMYRDTPAPFNCVYCGNSG 60

Query: 132 LTTIRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVM 191
           +T +RSK S AAVVGCMMP MLG CFLCPSMDCLWHKYHYCPSCKEKV DFEK D CAVM
Sbjct: 61  VTFVRSKPSLAAVVGCMMPLMLGFCFLCPSMDCLWHKYHYCPSCKEKVADFEKSDPCAVM 120

Query: 192 DPPHWTQPSYALP 251
           DPPHWTQ S+ALP
Sbjct: 121 DPPHWTQESFALP 133

Query: 252  311
           
Sbjct: 181  133

Query: 312  371
           
Sbjct: 241  133

Query: 372  431
           
Sbjct: 301  133

Query: 432  471
           
Sbjct: 361  133

The following BLAST results are available for this feature:

BLAST of CU095986 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDG7_CUCSA	1.7e-78	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091950 PE=4 SV=1	[more]
A0A067GTW3_CITSI	1.5e-63	81.95	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032751mg PE=4 SV=1	[more]
V4VHJ1_9ROSI	1.5e-63	81.95	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033047mg PE=4 SV=1	[more]
W9RBP2_9ROSA	4.4e-63	81.95	Uncharacterized protein OS=Morus notabilis GN=L484_013174 PE=4 SV=1	[more]
B9RFX0_RICCO	1.7e-62	80.45	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437770 PE=4 SV=1	[more]

BLAST of CU095986 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445586\|ref\|XP_004140553.1\|	8.3e-79	100.00	PREDICTED: uncharacterized protein LOC101221688 [Cucumis sativus]	[more]
gi\|659119896\|ref\|XP_008459901.1\|	1.3e-76	97.76	PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo]	[more]
gi\|567892627\|ref\|XP_006438834.1\|	7.5e-64	81.95	hypothetical protein CICLE_v10033047mg [Citrus clementina]	[more]
gi\|703112225\|ref\|XP_010100062.1\|	2.2e-63	81.95	hypothetical protein L484_013174 [Morus notabilis]	[more]
gi\|743819248\|ref\|XP_011020836.1\|	4.9e-63	81.95	PREDICTED: uncharacterized protein LOC105123069 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR006629	LITAF

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G091950	Csa6G091950	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02K0PNW	FKNP3UI02K0PNW	EST
FKNP3UI02L7AH7	FKNP3UI02L7AH7	EST
FKNP3UI02LD06D	FKNP3UI02LD06D	EST
FKNP3UI02M5ORX	FKNP3UI02M5ORX	EST
FKNP3UI02M9N5J	FKNP3UI02M9N5J	EST
FKNP3UI02MR4YG	FKNP3UI02MR4YG	EST
FKNP3UI02MTXLU	FKNP3UI02MTXLU	EST
FKNP3UI02N2VHS	FKNP3UI02N2VHS	EST
FKNP3UI02N2Z3B	FKNP3UI02N2Z3B	EST
FKNP3UI02NV5Y3	FKNP3UI02NV5Y3	EST
FKNP3UI02OTEFT	FKNP3UI02OTEFT	EST
G0030405	G0030405	EST
G0058985	G0058985	EST
G0061408	G0061408	EST
G0081618	G0081618	EST
G0108843	G0108843	EST
G0118386	G0118386	EST
G0138324	G0138324	EST
G0180265	G0180265	EST
G0203639	G0203639	EST
H0039837	H0039837	EST
H0040939	H0040939	EST
H0083577	H0083577	EST
H0115667	H0115667	EST
H0172785	H0172785	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006629	LPS-induced tumour necrosis factor alpha factor	PFAM	PF10601	zf-LITAF-like	coord: 46..110 score: 1.4
IPR006629	LPS-induced tumour necrosis factor alpha factor	SMART	SM00714	litaf	coord: 48..113 score: 1.7
None	No IPR available	PANTHER	PTHR23292	LIPOPOLYSACCHARIDE-INDUCED TRANSCRIPTION FACTOR REGULATING TUMOR NECROSIS FACTOR ALPHA	coord: 7..133 score: 1.7