Csa6G067370 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G067370
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 4757249 .. 4758729 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCGAAACAACACTGCCCATAAGAGACAAAAATGTGAAATAGAAACAGCGATAAATACCAATGAGAAAACTCCGAGCTTCTCTTCTTCTTGCCTGATCTAACCATTTCAACTCCATCGCGGGAATCTCTGAGCTCTCTCTCTCTCTCTCTCTATCTATCTCTTTCTTCTAGACATAGCCACCGGAAACAATGGCGTCGTCGACGGCTAAGATTACGTTTCGTGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCTACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGTGCGTTAATTGAATGCTAAATCTGTATGTTTATGCTTGTCTCAGTTCTGACTTAGAGTTTGAATTCTTCGTTCTGGACCTGCATTTCAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCATGATGAGTCGGACTCGGGCGTTCATGATGGAAATGATGGAAAGAAAGCCGGATCGGGTGCTATTCGGAGGCTGCTTCATCAGGTTTTGTGAAAATCTTAGTTATTTGAATTGTGATTAGTCCTGGAGAATTGAATTGTTTCACATGCATTAGTAAAGTTCAATTAGCGGATCTGGATTTTTTTTTTTTTTTTTTTTTTTTTGCCCTTAATAACGTGTGTTATAATGACTGAATTAGCACCTACTGAATCTATTTAGTTAAAGGAAGGCAAAAAAAAAAAAAAAAAAAAGATGAAGAAATCGTAATGCTTCGGCGTTCAGTCTTCACCGTTTCCATTATGCATCGTTAGTCACTCGGATGTGTGGATAGTGATATTTGTACTTAGATGTGGTGACCTACTGCTTGCGAAAACTCATTTTGACACACACACACACAAAAGAAAAAAAAAGAAGAAGATATTGTTAGTTTGTATCGAGCGGAATTGGCTGATAATGTGAATTGGAATTTTGTAGTTTAAGACTGAATGTTTGGTAAAGGTGGAAATGCGTACATAGGATGATGAACTAAAGATGACAATGGCCTTTTGTAATGGTTTTTGTTACTGTGAGTCCGTGACGGGCTAATTGGGCATTCTGGTGCTGAAGGAGCGATTTGAAACAAAATCAACTAATTGAAGTATAATGGAGAAGGCTTCAATAAAAAGATTGTACAAAATAATGATGGATGCCTCTGAACCTTTCTAGATAGATCCAAGACTTGGTGGAGCTGTAGTTAACCATAAAAACCCATAATGCCCTGCTGTTTAATCATGTTTCCTTGTGCTTTTTATTCATAAGCTCAAATGCAGCAACCATGACAAATCTTACTTGGCAGTGTGCCCTTCACTTGTGGCAACTCCCAAGTCCTAATGGTGAAATTAGTAGTTGCCTTTGTATACCTATCTCATCTCGTCCTCATAAACATGAGAAGGGAGATGAGAAAGGAATTCCTGCAGAATGTTTACACA

mRNA sequence

ATGGCGTCGTCGACGGCTAAGATTACGTTTCGTGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCTACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCATGATGAGTCGGACTCGGGCGTTCATGATGGAAATGATGGAAAGAAAGCCGGATCGGGTGCTATTCGGAGGCTGCTTCATCAGTTTAAGACTGAATGTTTGGTAAAGGTGGAAATGCGTACATAG

Coding sequence (CDS)

ATGGCGTCGTCGACGGCTAAGATTACGTTTCGTGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCTACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCATGATGAGTCGGACTCGGGCGTTCATGATGGAAATGATGGAAAGAAAGCCGGATCGGGTGCTATTCGGAGGCTGCTTCATCAGTTTAAGACTGAATGTTTGGTAAAGGTGGAAATGCGTACATAG

Protein sequence

MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFKTECLVKVEMRT*

Homology

[Close]

BLAST of Csa6G067370 vs. TrEMBL
Match: A0A0A0KBE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067370 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQVL 96
          SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQVL
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQVL 95

[Close]

BLAST of Csa6G067370 vs. TrEMBL
Match: W9S2S8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011283 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 7.0e-32
Identity = 69/90 (76.67%), Postives = 78/90 (86.67%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFR+ MVV++LL+ FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIV+EAQ+
Sbjct: 1  MASSTAKITFRIAMVVLVLLLFFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVMEAQR 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRL 91
          +VGWYHDESDSG  +G  GK   S   R+L
Sbjct: 61 TVGWYHDESDSGAREGRFGKNLRSATSRKL 90

[Close]

BLAST of Csa6G067370 vs. TrEMBL
Match: M5XMT6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013919mg PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-29
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASS A+ITFR++++ ++LLVLFYVGRPLYWKISAT+H+IR+NKQTV++GLS+IVLEAQK
Sbjct: 1  MASSAARITFRILIIALVLLVLFYVGRPLYWKISATIHEIRENKQTVQQGLSKIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRR-LLHQV 95
          SVGWYHDESDSG       K  G    RR LLHQV
Sbjct: 61 SVGWYHDESDSGSRVNRVAKNVGLATTRRLLLHQV 95

[Close]

BLAST of Csa6G067370 vs. TrEMBL
Match: A5BUI4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008851 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.5e-29
Identity = 64/95 (67.37%), Postives = 83/95 (87.37%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MA+STA+++FRVI+V++L+L+LFYVGRPLYWKISATVH+IRQNKQTVK+G+SQ V EAQK
Sbjct: 1  MATSTARVSFRVIVVILLILLLFYVGRPLYWKISATVHEIRQNKQTVKQGISQFVFEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQVL 96
          SVGW+HDESDSG+    + + A + A R++L QVL
Sbjct: 61 SVGWFHDESDSGL---REDRNAAAAANRKILRQVL 92

[Close]

BLAST of Csa6G067370 vs. TrEMBL
Match: D7T6L8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02180 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.2e-29
Identity = 63/95 (66.32%), Postives = 82/95 (86.32%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MA+STA+++FRVI+ ++L+L+LFYVGRPLYWKISATVH+IRQNKQTVK+G+SQ V EAQK
Sbjct: 1  MATSTARVSFRVIVAILLILLLFYVGRPLYWKISATVHEIRQNKQTVKQGISQFVFEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQVL 96
          SVGW+HDESDSG+    + + A + A R++L QVL
Sbjct: 61 SVGWFHDESDSGL---REDRNAAAAANRKILRQVL 92

[Close]

BLAST of Csa6G067370 vs. TAIR10
Match: AT5G18850.1 (AT5G18850.1 unknown protein)

HSP 1 Score: 126.3 bits (316), Expect = 1.0e-29
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 1


Query: 2  ASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKS 61
          +S T +I FR ++++ L++VLFYVGRPLYWKISAT+HDIR NKQ+V+EG+SQIV EAQ+S
Sbjct: 6  SSPTTRIWFRTVILIALMVVLFYVGRPLYWKISATIHDIRHNKQSVREGISQIVHEAQRS 65

Query: 62 VGWYHDESDSGVHDGNDGKKAGSGAIRRLL 92
          VGWYHDESDSG  +G++ KK+G    RRLL
Sbjct: 66 VGWYHDESDSGFREGHN-KKSGIAVSRRLL 94

[Close]

BLAST of Csa6G067370 vs. NCBI nr
Match: gi|700190975|gb|KGN46179.1| (hypothetical protein Csa_6G067370 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.6e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQVL 96
          SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQVL
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQVL 95

[Close]

BLAST of Csa6G067370 vs. NCBI nr
Match: gi|778710947|ref|XP_011656653.1| (PREDICTED: uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 1.0e-44
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQV 95
          SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQM 94

[Close]

BLAST of Csa6G067370 vs. NCBI nr
Match: gi|778710941|ref|XP_011656651.1| (PREDICTED: uncharacterized protein LOC101217077 isoform X1 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

[Close]

BLAST of Csa6G067370 vs. NCBI nr
Match: gi|778710944|ref|XP_011656652.1| (PREDICTED: uncharacterized protein LOC101217077 isoform X2 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

[Close]

BLAST of Csa6G067370 vs. NCBI nr
Match: gi|659117275|ref|XP_008458514.1| (PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 4.3e-43
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQV 95
          SVGWYHDESDSGV DGNDGKKAGS AIRRLLHQV
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQV 94

The following BLAST results are available for this feature:

BLAST of Csa6G067370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBE9_CUCSA	1.1e-45	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067370 PE=4 SV=1	[more]
W9S2S8_9ROSA	7.0e-32	76.67	Uncharacterized protein OS=Morus notabilis GN=L484_011283 PE=4 SV=1	[more]
M5XMT6_PRUPE	1.9e-29	69.47	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013919mg PE=4 SV=1	[more]
A5BUI4_VITVI	2.5e-29	67.37	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008851 PE=4 SV=1	[more]
D7T6L8_VITVI	7.2e-29	66.32	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02180 PE=4 SV=...	[more]

BLAST of Csa6G067370 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18850.1	1.0e-29	65.56	unknown protein	[more]

BLAST of Csa6G067370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190975\|gb\|KGN46179.1\|	1.6e-45	100.00	hypothetical protein Csa_6G067370 [Cucumis sativus]	[more]
gi\|778710947\|ref\|XP_011656653.1\|	1.0e-44	98.94	PREDICTED: uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus]	[more]
gi\|778710941\|ref\|XP_011656651.1\|	1.3e-44	100.00	PREDICTED: uncharacterized protein LOC101217077 isoform X1 [Cucumis sativus]	[more]
gi\|778710944\|ref\|XP_011656652.1\|	1.3e-44	100.00	PREDICTED: uncharacterized protein LOC101217077 isoform X2 [Cucumis sativus]	[more]
gi\|659117275\|ref\|XP_008458514.1\|	4.3e-43	97.87	PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU116372	cucumber EST collection version 3.0	transcribed_cluster
CU143292	cucumber EST collection version 3.0	transcribed_cluster
CU161084	cucumber EST collection version 3.0	transcribed_cluster
CU173754	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G067370.2	Csa6G067370.2	mRNA
Csa6G067370.1	Csa6G067370.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU161084	CU161084	transcribed_cluster
CU116372	CU116372	transcribed_cluster
CU173754	CU173754	transcribed_cluster
CU143292	CU143292	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G067370	Cla009351	Watermelon (97103) v1	cuwmB545
Csa6G067370	MELO3C021378	Melon (DHL92) v3.5.1	cumeB427
Csa6G067370	ClCG06G005560	Watermelon (Charleston Gray)	cuwcgB481
Csa6G067370	Lsi09G013820	Bottle gourd (USVL1VR-Ls)	culsiB395
Csa6G067370	MELO3C021378.2	Melon (DHL92) v3.6.1	cumedB407
Csa6G067370	Cla97C06G115070	Watermelon (97103) v2	cuwmbB473
Csa6G067370	Bhi12G001570	Wax gourd	cuwgoB546
Csa6G067370	CSPI06G05270	Wild cucumber (PI 183967)	cpicuB314
Csa6G067370	Cucsa.363380	Cucumber (Gy14) v1	cgycuB511
Csa6G067370	CmaCh17G002940	Cucurbita maxima (Rimu)	cmacuB370
Csa6G067370	CmoCh08G011660	Cucurbita moschata (Rifu)	cmocuB881
Csa6G067370	CmoCh17G002810	Cucurbita moschata (Rifu)	cmocuB360
Csa6G067370	Cp4.1LG17g01020	Cucurbita pepo (Zucchini)	cpecuB325
Csa6G067370	Cp4.1LG12g02490	Cucurbita pepo (Zucchini)	cpecuB144
Csa6G067370	Carg15949	Silver-seed gourd	carcuB0351

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G067370	Bottle gourd (USVL1VR-Ls)	culsiB460
Csa6G067370	Cucumber (Gy14) v2	cgybcuB141
Csa6G067370	Cucumber (Gy14) v2	cgybcuB282
Csa6G067370	Melon (DHL92) v3.6.1	cumedB475
Csa6G067370	Silver-seed gourd	carcuB0074
Csa6G067370	Silver-seed gourd	carcuB0634
Csa6G067370	Watermelon (97103) v2	cuwmbB461
Csa6G067370	Wax gourd	cuwgoB557
Csa6G067370	Cucumber (Chinese Long) v2	cucuB113
Csa6G067370	Cucumber (Gy14) v1	cgycuB375
Csa6G067370	Cucurbita maxima (Rimu)	cmacuB271
Csa6G067370	Cucurbita maxima (Rimu)	cmacuB896
Csa6G067370	Cucurbita moschata (Rifu)	cmocuB259
Csa6G067370	Melon (DHL92) v3.5.1	cumeB496
Csa6G067370	Watermelon (Charleston Gray)	cuwcgB472
Csa6G067370	Watermelon (97103) v1	cuwmB494
Csa6G067370	Cucurbita pepo (Zucchini)	cpecuB631